jgi.p|Nanoce1779_2|582435, mRNA_3515 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582435
Unique Name	mRNA_3515
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1460
Alignment location	scaffold_6:549453..551248 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582521
Track	FilteredModels2
ProteinId	582435

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:549453..551248 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582435	gene_3515	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582435	mRNA_3515-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3515	CDS_3515	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:549453..551248-
coding sequence from alignment at scaffold_6:549453..551248-

mRNA sequence

>mRNA_3515 ID=mRNA_3515|Name=jgi.p|Nanoce1779_2|582435|organism=Nannochloropsis oceanica|type=mRNA|length=1460bp
CTGCAACATGTATTCATTGGTGTTCAGGCGTCTCAGGACTGGGGTAGAGC
GAGGAGGCTGAGTTGAAGGGGGACTGTCGGCGTCTCGCCAAGCACATACC
TACCTTCGGCACACACAACCACCACTCTCACACCTCACCGCGCACCAAAC
CAAGGCACAGGGAAAAAAATGGTATATCAGCAGGTCCCCGCATACCTGAC
AGCCGTGGCCGAAGCTTCCCAACAAGCCGATGGCATTGCCTTAACGCACC
TCTTCTCCTATCCCTGTCTCTCCCATCGCCTAGGGCACCAGTTTGCCCGC
CTGGACGTCCGACAAGCCATCCACAACCACGCAACACTCAAACGGGTCGC
TCATGTACCACAACTTCTCGAGCCGTTCTTACGGGGGGCGGGCTGCTTGG
CAGACGGCGAACTCGAGGCAGCCTTCGAGCATCATCGGGGCGCGTTCGCC
ATGGCTTGTGGGATGTACAAGGAGCAGCAAGAAGAGTGGTTGCTCAACCT
TATGCGGAAGCTGGCGCGAGGGCTGCGGCTATTGGCACAAAAGGTGGATA
AGGAAACAGTGCGGCTGGACCCCATAATGAACGAGGCCGTCAAGGCCATC
TCAGACAAGTTCCGTGTTTTTGGCACGGTCACAGCTAGTGGACGTCGACG
GGTAGCCCTGATGCTTGCGAACGAGCAGATTATTTGCTACCTCCAATTAA
ACAACCCACGGCAATGCAAGCCATTGACTGATTGGGCCGATGCCCGACAT
AAGCTGACGGACGAGGATTTCACCTCGGGAGAGTTTGCACAGGCGGATGC
TGTGACATATCATTTCTTGCGGGCCCGTCTCTTTTTGCTCGACACGAATT
ATAAGGAGGCGGAGAGGTTTTTGGCATATGCCTTCAAGCATTGTCCTGTG
GCAGCGAAGAGGAATAAGCGGACGATTTTGTCGTACATGGTGCCAGTAAA
ACTTAATTTGGGGTTGCTACCGCGGCGCGGCCTCCTGGAGCGTTTCCAGC
TCAAGGAGTTCGAGTCGTTGGTGGCTGCCCTGCGGGACGGGGACTTCCGC
CTGTATCAGCAAGAGCTAGATCGATACCAAGACGAGTTTATCGCACGCGG
CGTTTACATCATTTTAGAGAAGCTCAAGTTGTTCGTGTATCGGAACTTCT
TCAAGAAGATCTGGGTGCTTAAAGGCAAGGAGTCAAGGCTCTCGATCGAC
CTCGTCTTTCAGCTGCACCAAGCGATAGATCCCGCTGCGGACGTGGACAT
TGACGAAATTGAGTGTTTGCTCGCCAACTTGATCTTCAAAGGGAATATTC
GAGGGTATATTGCTCACGAAAAGCGCATTTTGGTGCTGTCGAAGGACAAT
CCTTTCCCGTATCCGCAACAAAAGTAGGGAAAAGGAAGGAGGGTGCAAGG
TGGGCATGTATAGCTAACAAAGATATAAAAGCGCGAGGGAAAATAGGCAA
TGGTTGATAC

protein sequence of jgi.p|Nanoce1779_2|582435

>mRNA_3515-protein ID=mRNA_3515-protein|Name=jgi.p|Nanoce1779_2|582435|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MVYQQVPAYLTAVAEASQQADGIALTHLFSYPCLSHRLGHQFARLDVRQA
IHNHATLKRVAHVPQLLEPFLRGAGCLADGELEAAFEHHRGAFAMACGMY
KEQQEEWLLNLMRKLARGLRLLAQKVDKETVRLDPIMNEAVKAISDKFRV
FGTVTASGRRRVALMLANEQIICYLQLNNPRQCKPLTDWADARHKLTDED
FTSGEFAQADAVTYHFLRARLFLLDTNYKEAERFLAYAFKHCPVAAKRNK
RTILSYMVPVKLNLGLLPRRGLLERFQLKEFESLVAALRDGDFRLYQQEL
DRYQDEFIARGVYIILEKLKLFVYRNFFKKIWVLKGKESRLSIDLVFQLH
QAIDPAADVDIDEIECLLANLIFKGNIRGYIAHEKRILVLSKDNPFPYPQ
QK*

mRNA from alignment at scaffold_6:549453..551248-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3515 ID=mRNA_3515|Name=jgi.p|Nanoce1779_2|582435|organism=Nannochloropsis oceanica|type=mRNA|length=1796bp|location=Sequence derived from alignment at scaffold_6:549453..551248- (Nannochloropsis oceanica)
CTGCAACATGTATTCATTGGTGTTCAGGCGTCTCAGGACTGGGGTAGAGC
GAGGAGGCTGAGTTGAAGGGGGACTGTCGGCGTCTCGCCAAGCACATACC
TACCTTCGGCACACACAACCACCACTCTCACACCTCACCGCGCACCAAAC
CAAGGCACAGGGAAAAAAATGGTATATCAGCAGGTCCCCGCATACCTGAC
AGCCGTGGCCGAAGCTTCCCAACAAGCCGATGGCATTGCCTTAACGCACC
TCTTCTCCTATCCCTGTCTCTCCCATCGCCTAGGGCACCAGTTTGCCCGC
CTGGACGTCCGACAAGCCATCCACAACCACGCAACACTCAAACGGGTCGC
TCATGTACCACAACTTCTCGAGCCGTTCTTACGGGGGGCGGGCTGCTTGG
CAGACGGCGAACTCGAGGCAGCCTTCGAGCATCATCGGGGCGCGTTCGCC
ATGGCTTGTGGGATGTACAAGGAGCAGCAAGAAGAGTGGTTGCTCAACCT
TATGCGGAAGCTGGCGCGAGGGCTGCGGCTATTGGCACAAAAGGTGGATA
AGGAAACAGTGCGGCTGGACCCCATAATGAACGAGGCCGTCAAGGCCATC
TCAGACAAGTTCCGTGTTTTTGGCACGGTCACAGCTAGTGGACGTCGACG
GGTAGCCCTGATGCTTGCGAACGAGCAGATTATTTGCTACCTCCAATTAA
ACAACCCACGGCAATGCAAGCCATTGACTGATTGGGCCGATGCCCGACAT
AAGCTGACGGACGAGGATTTCACCTCGGGAGAGTTTGCACAGGCGGATGC
TGTGACATATCATTTCTTGCGGGCCCGTCTCTTTTTGCTCGACACGAATT
ATAAGGAGGCGGAGAGGTTTTTGGCATATGCCTTCAAGCATTGTCCTGTG
GCAGCGAAGAGGAATAAGCGGACGATTTTGTCGTACATGGTGCCAGTAAA
ACTTAATTTGGGGTTGCTACCGCGGGTACGACGGAGGGTGGAGGGAATGC
GGGGTAGAGGGAGGGAGAGAGGGAGGACTGGGAGAGGTGGTTGAGCTTTC
ATTTTTGTCCGTCAAGATAAGTGCGGGATTTCTCTTCTCCTTGTCCTCTA
AATCACCTTTCTCCCCCAACAATTTCTCGAAGCGCGGCCTCCTGGAGCGT
TTCCAGCTCAAGGAGTTCGAGTCGTTGGTGGCTGCCCTGCGGGACGGGGA
CTTCCGCCTGTATCAGCAAGAGCTAGATCGATACCAAGACGAGTTTATCG
CACGCGGCGTTTACATCATTTTAGAGAAGCTCAAGTTGTTCGTGTATCGG
AACTTCTTCAAGAAGATGTCAGTACATGGGGATGGAGAGAGGGAGGGAGG
GAGGGAGGGGGGGCCCGCAAGAGAGGAAGGACTTCTACTACTTGAGGCTT
GCAATTAGCTATGCCATTTCTTCCTTCTGTTGATCAGGCTGTCATCATGA
ATACTCACAATCTCCAAACGCTCACATCACTCAACGGAACCAACAGCTGG
GTGCTTAAAGGCAAGGAGTCAAGGCTCTCGATCGACCTCGTCTTTCAGCT
GCACCAAGCGATAGATCCCGCTGCGGACGTGGACATTGACGAAATTGAGT
GTTTGCTCGCCAACTTGATCTTCAAAGGGAATATTCGAGGGTATATTGCT
CACGAAAAGCGCATTTTGGTGCTGTCGAAGGACAATCCTTTCCCGTATCC
GCAACAAAAGTAGGGAAAAGGAAGGAGGGTGCAAGGTGGGCATGTATAGC
TAACAAAGATATAAAAGCGCGAGGGAAAATAGGCAATGGTTGATAC

Coding sequence (CDS) from alignment at scaffold_6:549453..551248-

>mRNA_3515 ID=mRNA_3515|Name=jgi.p|Nanoce1779_2|582435|organism=Nannochloropsis oceanica|type=CDS|length=3627bp|location=Sequence derived from alignment at scaffold_6:549453..551248- (Nannochloropsis oceanica)
CTGGGTGCTTAAAGGCAAGGAGTCAAGGCTCTCGATCGACCTCGTCTTTC
AGCTGCACCAAGCGATAGATCCCGCTGCGGACGTGGACATTGACGAAATT
GAGTGTTTGCTCGCCAACTTGATCTTCAAAGGGAATATTCGAGGGTATAT
TGCTCACGAAAAGCGCATTTTGGTGCTGTCGAAGGACAATCCTTTCCCGT
ATCCGCAACAAAAGTAGCGCGGCCTCCTGGAGCGTTTCCAGCTCAAGGAG
TTCGAGTCGTTGGTGGCTGCCCTGCGGGACGGGGACTTCCGCCTGTATCA
GCAAGAGCTAGATCGATACCAAGACGAGTTTATCGCACGCGGCGTTTACA
TCATTTTAGAGAAGCTCAAGTTGTTCGTGTATCGGAACTTCTTCAAGAAG
ATATGGTATATCAGCAGGTCCCCGCATACCTGACAGCCGTGGCCGAAGCT
TCCCAACAAGCCGATGGCATTGCCTTAACGCACCTCTTCTCCTATCCCTG
TCTCTCCCATCGCCTAGGGCACCAGTTTGCCCGCCTGGACGTCCGACAAG
CCATCCACAACCACGCAACACTCAAACGGGTCGCTCATGTACCACAACTT
CTCGAGCCGTTCTTACGGGGGGCGGGCTGCTTGGCAGACGGCGAACTCGA
GGCAGCCTTCGAGCATCATCGGGGCGCGTTCGCCATGGCTTGTGGGATGT
ACAAGGAGCAGCAAGAAGAGTGGTTGCTCAACCTTATGCGGAAGCTGGCG
CGAGGGCTGCGGCTATTGGCACAAAAGGTGGATAAGGAAACAGTGCGGCT
GGACCCCATAATGAACGAGGCCGTCAAGGCCATCTCAGACAAGTTCCGTG
TTTTTGGCACGGTCACAGCTAGTGGACGTCGACGGGTAGCCCTGATGCTT
GCGAACGAGCAGATTATTTGCTACCTCCAATTAAACAACCCACGGCAATG
CAAGCCATTGACTGATTGGGCCGATGCCCGACATAAGCTGACGGACGAGG
ATTTCACCTCGGGAGAGTTTGCACAGGCGGATGCTGTGACATATCATTTC
TTGCGGGCCCGTCTCTTTTTGCTCGACACGAATTATAAGGAGGCGGAGAG
GTTTTTGGCATATGCCTTCAAGCATTGTCCTGTGGCAGCGAAGAGGAATA
AGCGGACGATTTTGTCGTACATGGTGCCAGTAAAACTTAATTTGGGGTTG
CTACCGCGGCTGGGTGCTTAAAGGCAAGGAGTCAAGGCTCTCGATCGACC
TCGTCTTTCAGCTGCACCAAGCGATAGATCCCGCTGCGGACGTGGACATT
GACGAAATTGAGTGTTTGCTCGCCAACTTGATCTTCAAAGGGAATATTCG
AGGGTATATTGCTCACGAAAAGCGCATTTTGGTGCTGTCGAAGGACAATC
CTTTCCCGTATCCGCAACAAAAGTAGCGCGGCCTCCTGGAGCGTTTCCAG
CTCAAGGAGTTCGAGTCGTTGGTGGCTGCCCTGCGGGACGGGGACTTCCG
CCTGTATCAGCAAGAGCTAGATCGATACCAAGACGAGTTTATCGCACGCG
GCGTTTACATCATTTTAGAGAAGCTCAAGTTGTTCGTGTATCGGAACTTC
TTCAAGAAGATATGGTATATCAGCAGGTCCCCGCATACCTGACAGCCGTG
GCCGAAGCTTCCCAACAAGCCGATGGCATTGCCTTAACGCACCTCTTCTC
CTATCCCTGTCTCTCCCATCGCCTAGGGCACCAGTTTGCCCGCCTGGACG
TCCGACAAGCCATCCACAACCACGCAACACTCAAACGGGTCGCTCATGTA
CCACAACTTCTCGAGCCGTTCTTACGGGGGGCGGGCTGCTTGGCAGACGG
CGAACTCGAGGCAGCCTTCGAGCATCATCGGGGCGCGTTCGCCATGGCTT
GTGGGATGTACAAGGAGCAGCAAGAAGAGTGGTTGCTCAACCTTATGCGG
AAGCTGGCGCGAGGGCTGCGGCTATTGGCACAAAAGGTGGATAAGGAAAC
AGTGCGGCTGGACCCCATAATGAACGAGGCCGTCAAGGCCATCTCAGACA
AGTTCCGTGTTTTTGGCACGGTCACAGCTAGTGGACGTCGACGGGTAGCC
CTGATGCTTGCGAACGAGCAGATTATTTGCTACCTCCAATTAAACAACCC
ACGGCAATGCAAGCCATTGACTGATTGGGCCGATGCCCGACATAAGCTGA
CGGACGAGGATTTCACCTCGGGAGAGTTTGCACAGGCGGATGCTGTGACA
TATCATTTCTTGCGGGCCCGTCTCTTTTTGCTCGACACGAATTATAAGGA
GGCGGAGAGGTTTTTGGCATATGCCTTCAAGCATTGTCCTGTGGCAGCGA
AGAGGAATAAGCGGACGATTTTGTCGTACATGGTGCCAGTAAAACTTAAT
TTGGGGTTGCTACCGCGGCTGGGTGCTTAAAGGCAAGGAGTCAAGGCTCT
CGATCGACCTCGTCTTTCAGCTGCACCAAGCGATAGATCCCGCTGCGGAC
GTGGACATTGACGAAATTGAGTGTTTGCTCGCCAACTTGATCTTCAAAGG
GAATATTCGAGGGTATATTGCTCACGAAAAGCGCATTTTGGTGCTGTCGA
AGGACAATCCTTTCCCGTATCCGCAACAAAAGTAGCGCGGCCTCCTGGAG
CGTTTCCAGCTCAAGGAGTTCGAGTCGTTGGTGGCTGCCCTGCGGGACGG
GGACTTCCGCCTGTATCAGCAAGAGCTAGATCGATACCAAGACGAGTTTA
TCGCACGCGGCGTTTACATCATTTTAGAGAAGCTCAAGTTGTTCGTGTAT
CGGAACTTCTTCAAGAAGATATGGTATATCAGCAGGTCCCCGCATACCTG
ACAGCCGTGGCCGAAGCTTCCCAACAAGCCGATGGCATTGCCTTAACGCA
CCTCTTCTCCTATCCCTGTCTCTCCCATCGCCTAGGGCACCAGTTTGCCC
GCCTGGACGTCCGACAAGCCATCCACAACCACGCAACACTCAAACGGGTC
GCTCATGTACCACAACTTCTCGAGCCGTTCTTACGGGGGGCGGGCTGCTT
GGCAGACGGCGAACTCGAGGCAGCCTTCGAGCATCATCGGGGCGCGTTCG
CCATGGCTTGTGGGATGTACAAGGAGCAGCAAGAAGAGTGGTTGCTCAAC
CTTATGCGGAAGCTGGCGCGAGGGCTGCGGCTATTGGCACAAAAGGTGGA
TAAGGAAACAGTGCGGCTGGACCCCATAATGAACGAGGCCGTCAAGGCCA
TCTCAGACAAGTTCCGTGTTTTTGGCACGGTCACAGCTAGTGGACGTCGA
CGGGTAGCCCTGATGCTTGCGAACGAGCAGATTATTTGCTACCTCCAATT
AAACAACCCACGGCAATGCAAGCCATTGACTGATTGGGCCGATGCCCGAC
ATAAGCTGACGGACGAGGATTTCACCTCGGGAGAGTTTGCACAGGCGGAT
GCTGTGACATATCATTTCTTGCGGGCCCGTCTCTTTTTGCTCGACACGAA
TTATAAGGAGGCGGAGAGGTTTTTGGCATATGCCTTCAAGCATTGTCCTG
TGGCAGCGAAGAGGAATAAGCGGACGATTTTGTCGTACATGGTGCCAGTA
AAACTTAATTTGGGGTTGCTACCGCGG

Synonyms

Publications