jgi.p|Nanoce1779_2|582428, mRNA_3514 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582428
Unique NamemRNA_3514
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1072
Alignment locationscaffold_6:547772..549071 +

Link to JBrowse

Properties
Property NameValue
TranscriptId582514
TrackFilteredModels2
ProteinId582428
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:547772..549071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582428gene_3514Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582428mRNA_3514-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3514CDS_3514Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3514 ID=mRNA_3514|Name=jgi.p|Nanoce1779_2|582428|organism=Nannochloropsis oceanica|type=mRNA|length=1072bp
ACAGCCACAAAGATTAACAGCAATTTCGCAAGACCCATTCCTTCCGGCCG
TCACCATGCACGCCTCCGCCGCCACTTCCCCCGGCTCCTCCCTCCTCCCG
GCCCTCCTCGTCGTGTTGTGTCTCCTCTACCCTCCATCGGGCTGCGCCTG
CTTTCGTCTGGGCAAGCACGGCGGCAATGCGTCCACCATTACTAGCACTA
GCGGTGGCGCTGGCTCCTCGCCCTCCTCTTCCCCTGCCAAATGGAAGACG
CCACAATGGGGGAAAATGTTTGCGGAGGCCCTGGGCCAAACCGGCAACAC
GAACGATGGTAGCCACACCAGCATGGAGTGCAACGCGGCGGACGAGCTGA
TGCGTAAACGCGGGCCGGACAACTATCGGAAGGCGTTGGAGGAATACAAG
GCGTTGCTGGAGAAAGAGCCTGACAACGCCTCCCTCAAACTCAAACTCGC
CAACGCCAGCGTTTCCCTCCTTCGGTCTGTTACTAACGCTAACGCCGTCC
TTATCGATGGCATCTCCGATAGTGAGGCCAATCGAAAATTGTGGAAACAA
TACGCGTTCACTGCCTACGACCTTCTCAAAGACCTGCACAAATCCCAACC
AGACAACCCCCAAATCCACGTCTTGATGACCGAGGCCTATACCTACCGTA
CCTCCAGCAAGGGCATCCTCAAGGCAGCAGTCACAGGAGACGGACTCACA
TTCATGAAGCTGGTCAATCAGATCGTGAAGAGTCATCCCACCTACGATGC
CGGGGTTCCATTTATCTTCCGCGGGGCCTTTCTACTGGCTGCGCCCTGGC
CCCTGCGAGACGTACCCAAGGCGGTCGAAGCCTTCCAAGCTGCGTGCAAA
ATAGAGCCGAGAAGCCTGCGGAATAATTACTTTCTGGGAGTTTCTCAGTT
TCATGCCGGCGCGTGGAAGGAGGCAGCGGAGGCCTTCACGCGTGCTGTGG
GAGGGGAAGTGGAATCGGTGGCAGCGACCGAGAAGGATGTAGCCGAGTTT
TTGAAAAGAGAGAGCAGGCGGTCATTGGACGTGACCAAAGGGAAGATTGC
GGCAACCAAGATGTAGGGAGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|582428

>mRNA_3514-protein ID=mRNA_3514-protein|Name=jgi.p|Nanoce1779_2|582428|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MHASAATSPGSSLLPALLVVLCLLYPPSGCACFRLGKHGGNASTITSTSG
GAGSSPSSSPAKWKTPQWGKMFAEALGQTGNTNDGSHTSMECNAADELMR
KRGPDNYRKALEEYKALLEKEPDNASLKLKLANASVSLLRSVTNANAVLI
DGISDSEANRKLWKQYAFTAYDLLKDLHKSQPDNPQIHVLMTEAYTYRTS
SKGILKAAVTGDGLTFMKLVNQIVKSHPTYDAGVPFIFRGAFLLAAPWPL
RDVPKAVEAFQAACKIEPRSLRNNYFLGVSQFHAGAWKEAAEAFTRAVGG
EVESVAATEKDVAEFLKRESRRSLDVTKGKIAATKM*
back to top

mRNA from alignment at scaffold_6:547772..549071+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3514 ID=mRNA_3514|Name=jgi.p|Nanoce1779_2|582428|organism=Nannochloropsis oceanica|type=mRNA|length=1300bp|location=Sequence derived from alignment at scaffold_6:547772..549071+ (Nannochloropsis oceanica)
ACAGCCACAAAGATTAACAGCAATTTCGCAAGACCCATTCCTTCCGGCCG
TCACCATGCACGCCTCCGCCGCCACTTCCCCCGGCTCCTCCCTCCTCCCG
GCCCTCCTCGTCGTGTTGTGTCTCCTCTACCCTCCATCGGGCTGCGCCTG
CTTTCGTCTGGGCAAGCACGGCGGCAATGCGTCCACCATTACTAGCACTA
GCGGTGGCGCTGGCTCCTCGCCCTCCTCTTCCCCTGCCAAATGGAAGACG
CCACAATGGGGGAAAATGTTTGCGGAGGCCCTGGGCCAAACCGGCAACAC
GAACGATGGTAGCCACACCAGCATGGAGTGCAACGCGGCGGACGAGCTGA
TGCGTAAACGCGGGCCGGACAACTATCGGAAGGCGTTGGAGGAATACAAG
GCGTTGCTGGAGAAAGAGCCTGACAAGTGCGTGTAGCGGAGGGAACAGGG
TGGTGAGGCGCGTAGGGTGGTGGGGAGGTTTGAGTAGTCTCTACCCTTCC
GCTCACGCAATAGCTGCTCTAAAGGCTGGCATGTTGAGTTATCCACTGAT
TCATAGAATTTATGACACAAACCACCTCCGCCACGCTAAATTATCTTCTC
ATCCCTCTCTTCCTCCCTTTCTTCGTCCCTCCCCCCTCCCCCATCACAAC
ACAGCGCCTCCCTCAAACTCAAACTCGCCAACGCCAGCGTTTCCCTCCTT
CGGTCTGTTACTAACGCTAACGCCGTCCTTATCGATGGCATCTCCGATAG
TGAGGCCAATCGAAAATTGTGGAAACAATACGCGTTCACTGCCTACGACC
TTCTCAAAGACCTGCACAAATCCCAACCAGACAACCCCCAAATCCACGTC
TTGATGACCGAGGCCTATACCTACCGTACCTCCAGCAAGGGCATCCTCAA
GGCAGCAGTCACAGGAGACGGACTCACATTCATGAAGCTGGTCAATCAGA
TCGTGAAGAGTCATCCCACCTACGATGCCGGGGTTCCATTTATCTTCCGC
GGGGCCTTTCTACTGGCTGCGCCCTGGCCCCTGCGAGACGTACCCAAGGC
GGTCGAAGCCTTCCAAGCTGCGTGCAAAATAGAGCCGAGAAGCCTGCGGA
ATAATTACTTTCTGGGAGTTTCTCAGTTTCATGCCGGCGCGTGGAAGGAG
GCAGCGGAGGCCTTCACGCGTGCTGTGGGAGGGGAAGTGGAATCGGTGGC
AGCGACCGAGAAGGATGTAGCCGAGTTTTTGAAAAGAGAGAGCAGGCGGT
CATTGGACGTGACCAAAGGGAAGATTGCGGCAACCAAGATGTAGGGAGGG
back to top

Coding sequence (CDS) from alignment at scaffold_6:547772..549071+

>mRNA_3514 ID=mRNA_3514|Name=jgi.p|Nanoce1779_2|582428|organism=Nannochloropsis oceanica|type=CDS|length=2022bp|location=Sequence derived from alignment at scaffold_6:547772..549071+ (Nannochloropsis oceanica)
ATGCACGCCTCCGCCGCCACTTCCCCCGGCTCCTCCCTCCTCCCGGCCCT
CCTCGTCGTGTTGTGTCTCCTCTACCCTCCATCGGGCTGCGCCTGCTTTC
GTCTGGGCAAGCACGGCGGCAATGCGTCCACCATTACTAGCACTAGCGGT
GGCGCTGGCTCCTCGCCCTCCTCTTCCCCTGCCAAATGGAAGACGCCACA
ATGGGGGAAAATGTTTGCGGAGGCCCTGGGCCAAACCGGCAACACGAACG
ATGGTAGCCACACCAGCATGGAGTGCAACGCGGCGGACGAGCTGATGCGT
AAACGCGGGCCGGACAACTATCGGAAGGCGTTGGAGGAATACAAGGCGTT
GCTGGAGAAAGAGCCTGACAACGCCTCCCTCAAACTCAAACTCGCCAACG
CCAGCGTTTCCCTCCTTCGGTCTGTTACTAACGCTAACGCCGTCCTTATC
GATGGCATCTCCGATAGTGAGGCCAATCGAAAATTGTGGAAACAATACGC
GTTCACTGCCTACGACCTTCTCAAAGACCTGCACAAATCCCAACCAGACA
ACCCCCAAATCCACGTCTTGATGACCGAGGCCTATACCTACCGTACCTCC
AGCAAGGGCATCCTCAAGGCAGCAGTCACAGGAGACGGACTCACATTCAT
GAAGCTGGTCAATCAGATCGTGAAGAGTCATCCCACCTACGATGCCGGGG
TTCCATTTATCTTCCGCGGGGCCTTTCTACTGGCTGCGCCCTGGCCCCTG
CGAGACGTACCCAAGGCGGTCGAAGCCTTCCAAGCTGCGTGCAAAATAGA
GCCGAGAAGCCTGCGGAATAATTACTTTCTGGGAGTTTCTCAGTTTCATG
CCGGCGCGTGGAAGGAGGCAGCGGAGGCCTTCACGCGTGCTGTGGGAGGG
GAAGTGGAATCGGTGGCAGCGACCGAGAAGGATGTAGCCGAGTTTTTGAA
AAGAGAGAGCAGGCGGTCATTGGACGTGACCAAAGGGAAGATTGCGGCAA
CCAAGATGTAGATGCACGCCTCCGCCGCCACTTCCCCCGGCTCCTCCCTC
CTCCCGGCCCTCCTCGTCGTGTTGTGTCTCCTCTACCCTCCATCGGGCTG
CGCCTGCTTTCGTCTGGGCAAGCACGGCGGCAATGCGTCCACCATTACTA
GCACTAGCGGTGGCGCTGGCTCCTCGCCCTCCTCTTCCCCTGCCAAATGG
AAGACGCCACAATGGGGGAAAATGTTTGCGGAGGCCCTGGGCCAAACCGG
CAACACGAACGATGGTAGCCACACCAGCATGGAGTGCAACGCGGCGGACG
AGCTGATGCGTAAACGCGGGCCGGACAACTATCGGAAGGCGTTGGAGGAA
TACAAGGCGTTGCTGGAGAAAGAGCCTGACAACGCCTCCCTCAAACTCAA
ACTCGCCAACGCCAGCGTTTCCCTCCTTCGGTCTGTTACTAACGCTAACG
CCGTCCTTATCGATGGCATCTCCGATAGTGAGGCCAATCGAAAATTGTGG
AAACAATACGCGTTCACTGCCTACGACCTTCTCAAAGACCTGCACAAATC
CCAACCAGACAACCCCCAAATCCACGTCTTGATGACCGAGGCCTATACCT
ACCGTACCTCCAGCAAGGGCATCCTCAAGGCAGCAGTCACAGGAGACGGA
CTCACATTCATGAAGCTGGTCAATCAGATCGTGAAGAGTCATCCCACCTA
CGATGCCGGGGTTCCATTTATCTTCCGCGGGGCCTTTCTACTGGCTGCGC
CCTGGCCCCTGCGAGACGTACCCAAGGCGGTCGAAGCCTTCCAAGCTGCG
TGCAAAATAGAGCCGAGAAGCCTGCGGAATAATTACTTTCTGGGAGTTTC
TCAGTTTCATGCCGGCGCGTGGAAGGAGGCAGCGGAGGCCTTCACGCGTG
CTGTGGGAGGGGAAGTGGAATCGGTGGCAGCGACCGAGAAGGATGTAGCC
GAGTTTTTGAAAAGAGAGAGCAGGCGGTCATTGGACGTGACCAAAGGGAA
GATTGCGGCAACCAAGATGTAG
back to top
Synonyms
Publications