jgi.p|Nanoce1779_2|582424, mRNA_3513 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582424
Unique Name	mRNA_3513
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2215
Alignment location	scaffold_6:544003..546376 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582510
Track	FilteredModels2
ProteinId	582424

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:544003..546376 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582424	gene_3513	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582424	mRNA_3513-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3513	CDS_3513	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:544003..546376-
coding sequence from alignment at scaffold_6:544003..546376-

mRNA sequence

>mRNA_3513 ID=mRNA_3513|Name=jgi.p|Nanoce1779_2|582424|organism=Nannochloropsis oceanica|type=mRNA|length=2215bp
CTACTGTTGGTGGTGGGAGGGCCACGGTGGTGAACAATGGAGGAGGAATG
GGAGGGGTTGAGGACGAGGAAGGGGAGGAGGACGACTTTGAGGATGACTA
TGAGGACGATGATGGGGGGACTAGCACAGGGAGTGGAGGGGGAGGAGGAG
GGCGACGCAAGAAGCGGCAAAGGGGCGCGGGAGGGGGGGGAAGTATGGGT
GGAGGGAGTTCGGGGAGGAGGATGACTGAGGAGCAGAAAGTGGAAAGGCG
GGAGAGGAATCGGGAGCATGCCAAACGGTCCCGTGTGAGGAAGAAGTTCT
TGTTGGAGTCATTGCAGAAGAGCGTGAATGCCTTGCAGGAGGAGAACGAC
AAGCTGCGGGGGGCCATTCGCACGCATCTCAAGGACGGGGCACACGATTT
ACTCAAGTCGTGTGAGGTGGAGCCGGAGGACTCTTTGTTGACCTCAGATC
CTGCATCGGCGACCAAGATTTTGGATGATCCAGATTACACCCTTGTGAAG
GCCCTACAGACCGCCCAGCAGAACTTCGTGATCACCGACCCGACGCTGCC
TGACAATCCCATTGTCTACGCCTCTGGCGGCTTTTTAAATCTCACCGGCT
ACCAAATGGATCAAATCCTCGGCCGCAACTGTCGCTTCCTCCAAGGGCCT
GACACGGACCCTTCCGCCGTGGACAAGATCCGAAGAGCCATCGAAGATGG
GACAGACGGGAGCGTGTGTCTGTTGAATTACCGCGCGGACGGCACGACTT
TTTGGAACCAGTTTTTCATCGCGGCCCTGCGTGGGGCGGATGGGAACGTT
GTCAACTTTGTTGGTGTACAATGCCGTGTGAGCGAGGAGTACGCGCTGGA
GGTGCTGAAAAAGGAGATGGAGAGCACGACCTCGACGGGGGCGCCGTCGA
CGGGGATGCATTTGAAGGGATAGAGATGGTAAGGAGGAACTGGCATATTG
GTAGCTCGCCACGGCGAGAAAGAGTGACAAAGAGAACAGGAAATATGGGT
GTGTCTAGGAAGGCGAGGGTCGGGCGTCTGTTTGGGCGGGAGGCCTGTTG
TCTTTTGTTATCTTTTGTGGTCTTCGTCGTCCTTGTGGTGATTGTGGTGG
TGCTTTATCTATACACACAACATTATCAGTCGACCGTATACAAGCAGTAG
TTGCAGTAGAGCAGCAGAAGCTGCAGGAGCAGGAGCAGCAGGACTGGTCG
CATTTTTTCTTTTTTGCCTTTTTCTCTTTTTTGCATACAAATCTACGCGA
TGCAACATGACGACGAGACGAAGAGGACCATATACTGTTGTGAAGCCAAG
AGAAGCTTTCCGTCCCTTAGCTGGTTTGATATATTATATTATATTTTTAA
TTCAGTGGTAAAAGCAGCGAAACGGGAAGCCGGGAAGGAGGGGAGGAAAA
GGGGAGAAAAGGAGTGAGGGAGGAGACTGCAGGATATCTTTCACACATTT
ATCGTTCGTATCTTTCCAAACTTTTGCGTCACCCGTACTGGGCTAGGGTA
AGGAAGCAGAGCGTTTGAAGAAGGGATGAAAAGAGAGTCCGAGGGTTGAC
TTGGAGAGGCAGAGGGTGAGTTACACGCAAATTCACTAAATACGAGAGAA
GAGACGAAGGAGGAGACATGGGAGGACAAAAAAAATAAGATGAAAAGAGA
AAGGCAGGCAATCAAGCAAAAACAAAACGAGCCCCTCCCCCCCTCTGAAA
AGGAGGGGGAATTGTTCATATACCATAGGGACGACCAAGAGAATGAAGGA
AAAGGGCGCAGAGAATAAGAGACATGCGGTATGCAGTGAGTGTCATGGAG
CAGAGCAAGGGAAAAAGATAGCAAGGAGGGGGATGTAAGACGGCCTCCGA
CATTGTTGCCGCCGTGCCACCGCACTTGAAGTTGCCAGTTATGGGCAAGA
CAAAACGAAGGAGGGTTGAAGGAAGGGGGGCTGGAATTAAAGCAAGATCG
TCACTTTTAGAAAGAAAAAGAGAGAGAGGAATGTGTGTGGGTGATGTGAA
AAGGAGTAAATCTTTTTTAAAATCGATGGTGGTGGCGGGTGGACGACGAC
GACGACAGACACACATGACACTACGCTCAGTAGCGATCAATAAACGGAGG
AGAAAATAAGAAGTAGAAGGGGGGAAAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAAAAAGAAGAGAAGAAGGAGAAGAAGAAGAAGAAGATGAAGAAGAT
GAAGGAGAAAATGAA

protein sequence of jgi.p|Nanoce1779_2|582424

>mRNA_3513-protein ID=mRNA_3513-protein|Name=jgi.p|Nanoce1779_2|582424|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MGGVEDEEGEEDDFEDDYEDDDGGTSTGSGGGGGGRRKKRQRGAGGGGSM
GGGSSGRRMTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEEN
DKLRGAIRTHLKDGAHDLLKSCEVEPEDSLLTSDPASATKILDDPDYTLV
KALQTAQQNFVITDPTLPDNPIVYASGGFLNLTGYQMDQILGRNCRFLQG
PDTDPSAVDKIRRAIEDGTDGSVCLLNYRADGTTFWNQFFIAALRGADGN
VVNFVGVQCRVSEEYALEVLKKEMESTTSTGAPSTGMHLKG*

mRNA from alignment at scaffold_6:544003..546376-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3513 ID=mRNA_3513|Name=jgi.p|Nanoce1779_2|582424|organism=Nannochloropsis oceanica|type=mRNA|length=2374bp|location=Sequence derived from alignment at scaffold_6:544003..546376- (Nannochloropsis oceanica)
CTACTGTTGGTGGTGGGAGGGCCACGGTGGTGAACAATGGAGGAGGAATG
GGAGGGGTTGAGGACGAGGAAGGGGAGGAGGACGACTTTGAGGATGACTA
TGAGGACGATGATGGGGGGACTAGCACAGGGAGTGGAGGGGGAGGAGGAG
GGCGACGCAAGAAGCGGCAAAGGGGCGCGGGAGGGGGGGGAAGTATGGGT
GGAGGGAGTTCGGGGAGGAGGATGACTGAGGAGCAGAAAGTGGAAAGGCG
GGAGAGGAATCGGGAGCATGCCAAACGGTCCCGTGTGAGGAAGAAGTTCT
TGTTGGAGTCATTGCAGAAGAGCGTGAATGCCTTGCAGGAGGAGAACGAC
AAGCTGCGGGGGGCCATTCGCACGCATCTCAAGGACGGGGCACACGATTT
ACTCAAGTCGTGTGAGGTGGAGCCGGAGGACTCTTTGTTGACCTCAGATC
CTGCATCGGCGACCAAGATTTTGGATGATCCAGATTACACCCTTGTGAAG
GCCCTACAGACCGCCCAGCAGAACTTCGTGATCACCGACCCGACGCTGCC
TGACAATCGTAAGTTGGCTGAAAGGGAGTTTGGCTGTGTGGGTTCCGTGA
CTGCTTATATACGTGTACCACAAGAATAGATCAAGATAACCACCACTTTT
TGCTCCACTTATCGCCCCCCCCTCTCCCCCTCTTCTCTCTCTCACTCTCT
CCTGTTTTTGCACACAGCCATTGTCTACGCCTCTGGCGGCTTTTTAAATC
TCACCGGCTACCAAATGGATCAAATCCTCGGCCGCAACTGTCGCTTCCTC
CAAGGGCCTGACACGGACCCTTCCGCCGTGGACAAGATCCGAAGAGCCAT
CGAAGATGGGACAGACGGGAGCGTGTGTCTGTTGAATTACCGCGCGGACG
GCACGACTTTTTGGAACCAGTTTTTCATCGCGGCCCTGCGTGGGGCGGAT
GGGAACGTTGTCAACTTTGTTGGTGTACAATGCCGTGTGAGCGAGGAGTA
CGCGCTGGAGGTGCTGAAAAAGGAGATGGAGAGCACGACCTCGACGGGGG
CGCCGTCGACGGGGATGCATTTGAAGGGATAGAGATGGTAAGGAGGAACT
GGCATATTGGTAGCTCGCCACGGCGAGAAAGAGTGACAAAGAGAACAGGA
AATATGGGTGTGTCTAGGAAGGCGAGGGTCGGGCGTCTGTTTGGGCGGGA
GGCCTGTTGTCTTTTGTTATCTTTTGTGGTCTTCGTCGTCCTTGTGGTGA
TTGTGGTGGTGCTTTATCTATACACACAACATTATCAGTCGACCGTATAC
AAGCAGTAGTTGCAGTAGAGCAGCAGAAGCTGCAGGAGCAGGAGCAGCAG
GACTGGTCGCATTTTTTCTTTTTTGCCTTTTTCTCTTTTTTGCATACAAA
TCTACGCGATGCAACATGACGACGAGACGAAGAGGACCATATACTGTTGT
GAAGCCAAGAGAAGCTTTCCGTCCCTTAGCTGGTTTGATATATTATATTA
TATTTTTAATTCAGTGGTAAAAGCAGCGAAACGGGAAGCCGGGAAGGAGG
GGAGGAAAAGGGGAGAAAAGGAGTGAGGGAGGAGACTGCAGGATATCTTT
CACACATTTATCGTTCGTATCTTTCCAAACTTTTGCGTCACCCGTACTGG
GCTAGGGTAAGGAAGCAGAGCGTTTGAAGAAGGGATGAAAAGAGAGTCCG
AGGGTTGACTTGGAGAGGCAGAGGGTGAGTTACACGCAAATTCACTAAAT
ACGAGAGAAGAGACGAAGGAGGAGACATGGGAGGACAAAAAAAATAAGAT
GAAAAGAGAAAGGCAGGCAATCAAGCAAAAACAAAACGAGCCCCTCCCCC
CCTCTGAAAAGGAGGGGGAATTGTTCATATACCATAGGGACGACCAAGAG
AATGAAGGAAAAGGGCGCAGAGAATAAGAGACATGCGGTATGCAGTGAGT
GTCATGGAGCAGAGCAAGGGAAAAAGATAGCAAGGAGGGGGATGTAAGAC
GGCCTCCGACATTGTTGCCGCCGTGCCACCGCACTTGAAGTTGCCAGTTA
TGGGCAAGACAAAACGAAGGAGGGTTGAAGGAAGGGGGGCTGGAATTAAA
GCAAGATCGTCACTTTTAGAAAGAAAAAGAGAGAGAGGAATGTGTGTGGG
TGATGTGAAAAGGAGTAAATCTTTTTTAAAATCGATGGTGGTGGCGGGTG
GACGACGACGACGACAGACACACATGACACTACGCTCAGTAGCGATCAAT
AAACGGAGGAGAAAATAAGAAGTAGAAGGGGGGAAAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAAAAAGAAGAGAAGAAGGAGAAGAAGAAGAAGAAGAT
GAAGAAGATGAAGGAGAAAATGAA

Coding sequence (CDS) from alignment at scaffold_6:544003..546376-

>mRNA_3513 ID=mRNA_3513|Name=jgi.p|Nanoce1779_2|582424|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_6:544003..546376- (Nannochloropsis oceanica)
CCATTGTCTACGCCTCTGGCGGCTTTTTAAATCTCACCGGCTACCAAATG
GATCAAATCCTCGGCCGCAACTGTCGCTTCCTCCAAGGGCCTGACACGGA
CCCTTCCGCCGTGGACAAGATCCGAAGAGCCATCGAAGATGGGACAGACG
GGAGCGTGTGTCTGTTGAATTACCGCGCGGACGGCACGACTTTTTGGAAC
CAGTTTTTCATCGCGGCCCTGCGTGGGGCGGATGGGAACGTTGTCAACTT
TGTTGGTGTACAATGCCGTGTGAGCGAGGAGTACGCGCTGGAGGTGCTGA
AAAAGGAGATGGAGAGCACGACCTCGACGGGGGCGCCGTCGACGGGGATG
CATTTGAAGGGATAGATGGGAGGGGTTGAGGACGAGGAAGGGGAGGAGGA
CGACTTTGAGGATGACTATGAGGACGATGATGGGGGGACTAGCACAGGGA
GTGGAGGGGGAGGAGGAGGGCGACGCAAGAAGCGGCAAAGGGGCGCGGGA
GGGGGGGGAAGTATGGGTGGAGGGAGTTCGGGGAGGAGGATGACTGAGGA
GCAGAAAGTGGAAAGGCGGGAGAGGAATCGGGAGCATGCCAAACGGTCCC
GTGTGAGGAAGAAGTTCTTGTTGGAGTCATTGCAGAAGAGCGTGAATGCC
TTGCAGGAGGAGAACGACAAGCTGCGGGGGGCCATTCGCACGCATCTCAA
GGACGGGGCACACGATTTACTCAAGTCGTGTGAGGTGGAGCCGGAGGACT
CTTTGTTGACCTCAGATCCTGCATCGGCGACCAAGATTTTGGATGATCCA
GATTACACCCTTGTGAAGGCCCTACAGACCGCCCAGCAGAACTTCGTGAT
CACCGACCCGACGCTGCCTGACAATCCCATTGTCTACGCCTCTGGCGGCT
TTTTAAATCTCACCGGCTACCAAATGGATCAAATCCTCGGCCGCAACTGT
CGCTTCCTCCAAGGGCCTGACACGGACCCTTCCGCCGTGGACAAGATCCG
AAGAGCCATCGAAGATGGGACAGACGGGAGCGTGTGTCTGTTGAATTACC
GCGCGGACGGCACGACTTTTTGGAACCAGTTTTTCATCGCGGCCCTGCGT
GGGGCGGATGGGAACGTTGTCAACTTTGTTGGTGTACAATGCCGTGTGAG
CGAGGAGTACGCGCTGGAGGTGCTGAAAAAGGAGATGGAGAGCACGACCT
CGACGGGGGCGCCGTCGACGGGGATGCATTTGAAGGGATAGATGGGAGGG
GTTGAGGACGAGGAAGGGGAGGAGGACGACTTTGAGGATGACTATGAGGA
CGATGATGGGGGGACTAGCACAGGGAGTGGAGGGGGAGGAGGAGGGCGAC
GCAAGAAGCGGCAAAGGGGCGCGGGAGGGGGGGGAAGTATGGGTGGAGGG
AGTTCGGGGAGGAGGATGACTGAGGAGCAGAAAGTGGAAAGGCGGGAGAG
GAATCGGGAGCATGCCAAACGGTCCCGTGTGAGGAAGAAGTTCTTGTTGG
AGTCATTGCAGAAGAGCGTGAATGCCTTGCAGGAGGAGAACGACAAGCTG
CGGGGGGCCATTCGCACGCATCTCAAGGACGGGGCACACGATTTACTCAA
GTCGTGTGAGGTGGAGCCGGAGGACTCTTTGTTGACCTCAGATCCTGCAT
CGGCGACCAAGATTTTGGATGATCCAGATTACACCCTTGTGAAGGCCCTA
CAGACCGCCCAGCAGAACTTCGTGATCACCGACCCGACGCTGCCTGACAA
TC

Synonyms

Publications