jgi.p|Nanoce1779_2|582419, mRNA_3511 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582419
Unique NamemRNA_3511
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length772
Alignment locationscaffold_6:540519..541290 -

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Properties
Property NameValue
TranscriptId582505
TrackFilteredModels2
ProteinId582419
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:540519..541290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582419gene_3511Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582419mRNA_3511-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3511CDS_3511Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3511 ID=mRNA_3511|Name=jgi.p|Nanoce1779_2|582419|organism=Nannochloropsis oceanica|type=mRNA|length=772bp
CCCGCCAAAATCACCCCCACAATCGCTGCCCTTGGCGCCGCTACGCTTGC
TGGTGCTCGGCTTGTTTTTCCACAAGCGCATGAGCAATGGCGCCACCCAA
AAAATAGGAGTTTTGGGTCGGGCTGCAGCGACCAATGCATGCGCTTTTTC
GTAATCTGCAGCTGCAGCGGCGGCAGAAGAGGAGGAGGACGTCGAGGAGG
AGGCAGGGGGTGGAGCTGCCTTGCGTTTTAAGATGGGAGGCGAATAGAAG
AAAGCCGAACACATGCAGGCACCCAGGCAGATAGCCAATAGTAGGAACTT
CAGAGTGGTGGTCGATATTGTCGTCGTCGTTCTTCGCCTATGGTTCCTCG
AAGTTGGTGTTGTGCTTGCTCGAGCTCGCCGTAGGTCGTGTTGCCGGTGT
CGAGTCATGATGATGCCTTGCAAAGGCCTGTCGAGGATGCGGGAATGTGT
TGACACTTGTGATGCCCGTTCCAGGGTGGGGAAGAACAAAGGCACAATTC
ATGGGAGTGCATGTCATGTCAAGTGACGCGGACAATGGGATATAACGAAG
GTGGGAAATGGGCTGGCAGGTTGCGCCTCTTGGGTCATACTCCTTCTGTC
ACGAGCCTCCGCATCGTAACGTCGATTCAAAATACCGTCTTTTACTACTA
TAGTAAAAAGTGCGACGTGCGAACGAAGCAAGAGTGGACTCTTTCTGGGC
CGATTTTCAAGCCCATATCCCAGCCAAATGCGTTGACAAGGCAAAAGAAA
TGTTGTGAGGCTCTGTGCGGCT
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protein sequence of jgi.p|Nanoce1779_2|582419

>mRNA_3511-protein ID=mRNA_3511-protein|Name=jgi.p|Nanoce1779_2|582419|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MQAPRQIANSRNFRVVVDIVVVVLRLWFLEVGVVLARARRRSCCRCRVMM
MPCKGLSRMRECVDTCDARSRVGKNKGTIHGSACHVK*
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mRNA from alignment at scaffold_6:540519..541290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3511 ID=mRNA_3511|Name=jgi.p|Nanoce1779_2|582419|organism=Nannochloropsis oceanica|type=mRNA|length=772bp|location=Sequence derived from alignment at scaffold_6:540519..541290- (Nannochloropsis oceanica)
CCCGCCAAAATCACCCCCACAATCGCTGCCCTTGGCGCCGCTACGCTTGC
TGGTGCTCGGCTTGTTTTTCCACAAGCGCATGAGCAATGGCGCCACCCAA
AAAATAGGAGTTTTGGGTCGGGCTGCAGCGACCAATGCATGCGCTTTTTC
GTAATCTGCAGCTGCAGCGGCGGCAGAAGAGGAGGAGGACGTCGAGGAGG
AGGCAGGGGGTGGAGCTGCCTTGCGTTTTAAGATGGGAGGCGAATAGAAG
AAAGCCGAACACATGCAGGCACCCAGGCAGATAGCCAATAGTAGGAACTT
CAGAGTGGTGGTCGATATTGTCGTCGTCGTTCTTCGCCTATGGTTCCTCG
AAGTTGGTGTTGTGCTTGCTCGAGCTCGCCGTAGGTCGTGTTGCCGGTGT
CGAGTCATGATGATGCCTTGCAAAGGCCTGTCGAGGATGCGGGAATGTGT
TGACACTTGTGATGCCCGTTCCAGGGTGGGGAAGAACAAAGGCACAATTC
ATGGGAGTGCATGTCATGTCAAGTGACGCGGACAATGGGATATAACGAAG
GTGGGAAATGGGCTGGCAGGTTGCGCCTCTTGGGTCATACTCCTTCTGTC
ACGAGCCTCCGCATCGTAACGTCGATTCAAAATACCGTCTTTTACTACTA
TAGTAAAAAGTGCGACGTGCGAACGAAGCAAGAGTGGACTCTTTCTGGGC
CGATTTTCAAGCCCATATCCCAGCCAAATGCGTTGACAAGGCAAAAGAAA
TGTTGTGAGGCTCTGTGCGGCT
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Coding sequence (CDS) from alignment at scaffold_6:540519..541290-

>mRNA_3511 ID=mRNA_3511|Name=jgi.p|Nanoce1779_2|582419|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_6:540519..541290- (Nannochloropsis oceanica)
ATGCAGGCACCCAGGCAGATAGCCAATAGTAGGAACTTCAGAGTGGTGGT
CGATATTGTCGTCGTCGTTCTTCGCCTATGGTTCCTCGAAGTTGGTGTTG
TGCTTGCTCGAGCTCGCCGTAGGTCGTGTTGCCGGTGTCGAGTCATGATG
ATGCCTTGCAAAGGCCTGTCGAGGATGCGGGAATGTGTTGACACTTGTGA
TGCCCGTTCCAGGGTGGGGAAGAACAAAGGCACAATTCATGGGAGTGCAT
GTCATGTCAAGTGA
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Synonyms
Publications