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Properties
| Property Name | Value |
|---|
| TranscriptId | 577164 |
| Track | FilteredModels2 |
| ProteinId | 577078 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:865285..867705 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_351 ID=mRNA_351|Name=jgi.p|Nanoce1779_2|577078|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp
ACAGGTAGTCGCGTCGCCAGCAGCAAGCGCGGTCAGCCTTTTGCCTCAGC
AGCAACCATGTCGAGAATCATTCTCACTGCCTGCCTTTTGGCGGGGTGCG
TCCAGGGCTTCCAGTCCTCGGGCTTCCGACCCAGCTTCGCTCTTTCCAGG
AAAAGCTATGCACTCATTGCACCTTCTAAGGCCTTGCCCGACAGTCTTCG
TCAACGTCATGGTGGTGCCAGTGCGACCGGCCTTCCGCGCTCCTTGCCCC
GCGTTTCCTCCACCGCCGCCTCCATCGTCGAGAACTCCGGCGCGGTCCCC
GAGAAGACCACGTGGTGGCAACGCTTCAAGGCCCAGCTCCCCACCAAGGT
GGAACGCAAGAAGATTTTACCCTTGACGCTCATGTTCTTCTGCATGTTGT
TTAACTACACCATCCTGCGTGACACTAAGGACGTGCTCGTGGTGACTGCC
CCTCAGTCCGGCGCGGAGGTTATTCCCTTCCTCAAGACGTACGTCAATCT
CCCGGCCGCGCTCTTGATCACCATCGTGTATTCCAAGCTTTGCAATGCCA
TGCCCATGGCCAAGGTCTTTTACACGCTCATCACCCCGTTCCTGGCGTTT
TTTGCCTCCTTCGCCTTCCTCATCTACCCCAACCGGAATATCCTCCACCC
TAACGCCGCCGCGGATCACTTGCAGAAGATCCTGCCTGCATCATTCGGTG
CCTTGATCTCGATCTTCCGTAATTGGACATACGCCTTGTTCTACACGATG
GCTGAGCTGTGGGGGTCTGTGGTGGTGTCTCTGTTGTTTTGGGGGTTCGC
GAATGAGGTGACCACCGTGCCGGAGGCGAAGAAGTACTATCCTTTGTTTG
GGTTGGGGGCGAACGTGGCGCTGATTTTCTCGGGGCAGTACGTGCGTTTC
GTGTCTAGCATTAGGAAGGGGCTGCCGGATGGCGTGGATAAATGGGGTGT
GTCTCTGAAGCTGCTCATGGGCGCGGTGGTGGCTCTTGGAACGGTCATGG
TCGGGGCGTACACGCACATGCAACGCAATGTCCTGACGGACCCCGAGTGC
TACAGCGCGGAAAAGCAGAAGAAGAGCAGCAAGAAGAGTGCGACGAACAT
GACGTTGAAGGAGTCGGCGCAGTATCTGTTCAAGAGCAAGTACATCCGGG
ACTTGGCTACCTTGGTCATTGCCTACGGGATGTCCATCAACATTGTGGAG
GTCACGTGGAAGGGCAAACTCAAGGAAGCCTTCCCTGACCCCAACGCTTA
CTCTGCTTTCATGGGCAACTTCTCAACAGCCACGGGGTGCGTTACGCTGA
TCATGATGCTCTTAGGCCGAACCATCTTCCAGAAGTACGGGTGGGGTGTC
GCGGCGTTAATCACCCCTGTCATGCTCCTGGCGACGGGGGTGGCCTTTTT
CTCCTTGATTATTTTCAACGGATTTTTTTCCCCGGTAACGGCAGCGTTGG
GAATGACGCCGTTGATGCTGGCGGTCATTATTGGGGCCGCGCAGAATGTT
TTGTCCAAGTCGAGCAAGTACTCTCTGTTTGACCCGTGCAAAGAGATGGC
GTACATTCCCTTGGATGCCGAGCAGAAGACTAAGGGCAAGGCCGCCGTGG
ACGTCATCGGGAACCCCCTGGGCAAGTCAGGAGGGTCGTTCATCCAGCAG
ATTTTGATCTTGGGGTTGGGGAGCTTGTCGGCGTCGACGCCCTACCTGGC
CGGCATTATCTTCTTGATTGTGGGGGCGTGGATCAATGCGGCCAATTCGC
TGTCGAAGCAATTTAAGGAGAAGATGGAGGCCAATCCGAATGCGGAGCAT
TAAGCTTTGATCGTGGTTCTGGTTCTCATGGAGCTGGATAGGGGAAGGGG
GCTTTTTGGAGGGGAGAGGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|577078 >mRNA_351-protein ID=mRNA_351-protein|Name=jgi.p|Nanoce1779_2|577078|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MSRIILTACLLAGCVQGFQSSGFRPSFALSRKSYALIAPSKALPDSLRQR
HGGASATGLPRSLPRVSSTAASIVENSGAVPEKTTWWQRFKAQLPTKVER
KKILPLTLMFFCMLFNYTILRDTKDVLVVTAPQSGAEVIPFLKTYVNLPA
ALLITIVYSKLCNAMPMAKVFYTLITPFLAFFASFAFLIYPNRNILHPNA
AADHLQKILPASFGALISIFRNWTYALFYTMAELWGSVVVSLLFWGFANE
VTTVPEAKKYYPLFGLGANVALIFSGQYVRFVSSIRKGLPDGVDKWGVSL
KLLMGAVVALGTVMVGAYTHMQRNVLTDPECYSAEKQKKSSKKSATNMTL
KESAQYLFKSKYIRDLATLVIAYGMSINIVEVTWKGKLKEAFPDPNAYSA
FMGNFSTATGCVTLIMMLLGRTIFQKYGWGVAALITPVMLLATGVAFFSL
IIFNGFFSPVTAALGMTPLMLAVIIGAAQNVLSKSSKYSLFDPCKEMAYI
PLDAEQKTKGKAAVDVIGNPLGKSGGSFIQQILILGLGSLSASTPYLAGI
IFLIVGAWINAANSLSKQFKEKMEANPNAEH* back to topmRNA from alignment at scaffold_3:865285..867705+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_351 ID=mRNA_351|Name=jgi.p|Nanoce1779_2|577078|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp|location=Sequence derived from alignment at scaffold_3:865285..867705+ (Nannochloropsis oceanica)
ACAGGTAGTCGCGTCGCCAGCAGCAAGCGCGGTCAGCCTTTTGCCTCAGC
AGCAACCATGTCGAGAATCATTCTCACTGCCTGCCTTTTGGCGGGGTGCG
TCCAGGGCTTCCAGTCCTCGGGCTTCCGACCCAGCTTCGCTCTTTCCAGG
TAAGGGCATCCTGGAAGACTGTGATGTTAGGAAAGGATAGGTGGGCGCAG
GACCACGCAAGAGCTAGAACAAACTTGCCCCTCGGCCTTCGTCATGTTGA
AGTGCTTGCGGGCGGCGGAGGAGAGTGAGCTTTCGATAGCATAAAGACCA
GGGCACACTGCGCGTAGTCACTCTAAGATGTGCACCAGGGGAATGCAAAG
AACTTAATATGTATCGAGTGGCATGCGGATATGTGGGCGTAGACCGAGTG
CTCAAAACAGCATCGAGCATTCAGAGCAGCGCTGGGCCCTCCGCGCATTA
CGTCTCTGTCTACTTGGAGTAACCCACATATACCGTCTCAAACCAGACCT
TCTTTCACTGCACAACCTTTTTCGACTAGATAAGGATATGAATAAGAACG
GCATAACACTTTATCATCATTCCAGTCCTACAGTATCAGACTACATCACC
TCCCCCTCCTGACCCCTCTGCATGTCCTCCCATCTCACTAACCCCAACCT
CGCTCCTCCCCTCATGTAACTCCCCCCCCAAAAAAACGACAACGACAGGA
AAAGCTATGCACTCATTGCACCTTCTAAGGCCTTGCCCGACAGTCTTCGT
CAACGTCATGGTGGTGCCAGTGCGACCGGCCTTCCGCGCTCCTTGCCCCG
CGTTTCCTCCACCGCCGCCTCCATCGTCGAGAACTCCGGCGCGGTCCCCG
AGAAGACCACGTGGTGGCAACGCTTCAAGGCCCAGCTCCCCACCAAGGTG
GAACGCAAGAAGATTTTACCCTTGACGCTCATGTTCTTCTGCATGTTGTT
TAACTACACCATCCTGCGTGACACTAAGGACGTGCTCGTGGTGACTGCCC
CTCAGTCCGGCGCGGAGGTTATTCCCTTCCTCAAGACGTACGTCAATCTC
CCGGCCGCGCTCTTGATCACCATCGTGTATTCCAAGCTTTGCAATGCCAT
GCCCATGGCCAAGGTCTTTTACACGCTCATCACCCCGTTCCTGGCGTTTT
TTGCCTCCTTCGCCTTCCTCATCTACCCCAACCGGAATATCCTCCACCCT
AACGCCGCCGCGGATCACTTGCAGAAGATCCTGCCTGCATCATTCGGTGC
CTTGATCTCGATCTTCCGTAATTGGACATACGCCTTGTTCTACACGATGG
CTGAGCTGTGGGGGTCTGTGGTGGTGTCTCTGTTGTTTTGGGGGTTCGCG
AATGAGGTGACCACCGTGCCGGAGGCGAAGAAGTACTATCCTTTGTTTGG
GTTGGGGGCGAACGTGGCGCTGATTTTCTCGGGGCAGTACGTGCGTTTCG
TGTCTAGCATTAGGAAGGGGCTGCCGGATGGCGTGGATAAATGGGGTGTG
TCTCTGAAGCTGCTCATGGGCGCGGTGGTGGCTCTTGGAACGGTCATGGT
CGGGGCGTACACGCACATGCAACGCAATGTCCTGACGGACCCCGAGTGCT
ACAGCGCGGAAAAGCAGAAGAAGAGCAGCAAGAAGAGTGCGACGAACATG
ACGTTGAAGGAGTCGGCGCAGTATCTGTTCAAGAGCAAGTACATCCGGGA
CTTGGCTACCTTGGTCATTGCCTACGGGATGTCCATCAACATTGTGGAGG
TCACGTGGAAGGGCAAACTCAAGGAAGCCTTCCCTGACCCCAACGCTTAC
TCTGCTTTCATGGGCAACTTCTCAACAGCCACGGGGTGCGTTACGCTGAT
CATGATGCTCTTAGGCCGAACCATCTTCCAGAAGTACGGGTGGGGTGTCG
CGGCGTTAATCACCCCTGTCATGCTCCTGGCGACGGGGGTGGCCTTTTTC
TCCTTGATTATTTTCAACGGATTTTTTTCCCCGGTAACGGCAGCGTTGGG
AATGACGCCGTTGATGCTGGCGGTCATTATTGGGGCCGCGCAGAATGTTT
TGTCCAAGTCGAGCAAGTACTCTCTGTTTGACCCGTGCAAAGAGATGGCG
TACATTCCCTTGGATGCCGAGCAGAAGACTAAGGGCAAGGCCGCCGTGGA
CGTCATCGGGAACCCCCTGGGCAAGTCAGGAGGGTCGTTCATCCAGCAGA
TTTTGATCTTGGGGTTGGGGAGCTTGTCGGCGTCGACGCCCTACCTGGCC
GGCATTATCTTCTTGATTGTGGGGGCGTGGATCAATGCGGCCAATTCGCT
GTCGAAGCAATTTAAGGAGAAGATGGAGGCCAATCCGAATGCGGAGCATT
AAGCTTTGATCGTGGTTCTGGTTCTCATGGAGCTGGATAGGGGAAGGGGG
CTTTTTGGAGGGGAGAGGAGG back to topCoding sequence (CDS) from alignment at scaffold_3:865285..867705+ >mRNA_351 ID=mRNA_351|Name=jgi.p|Nanoce1779_2|577078|organism=Nannochloropsis oceanica|type=CDS|length=3492bp|location=Sequence derived from alignment at scaffold_3:865285..867705+ (Nannochloropsis oceanica)
ATGTCGAGAATCATTCTCACTGCCTGCCTTTTGGCGGGGTGCGTCCAGGG
CTTCCAGTCCTCGGGCTTCCGACCCAGCTTCGCTCTTTCCAGGAAAAGCT
ATGCACTCATTGCACCTTCTAAGGCCTTGCCCGACAGTCTTCGTCAACGT
CATGGTGGTGCCAGTGCGACCGGCCTTCCGCGCTCCTTGCCCCGCGTTTC
CTCCACCGCCGCCTCCATCGTCGAGAACTCCGGCGCGGTCCCCGAGAAGA
CCACGTGGTGGCAACGCTTCAAGGCCCAGCTCCCCACCAAGGTGGAACGC
AAGAAGATTTTACCCTTGACGCTCATGTTCTTCTGCATGTTGTTTAACTA
CACCATCCTGCGTGACACTAAGGACGTGCTCGTGGTGACTGCCCCTCAGT
CCGGCGCGGAGGTTATTCCCTTCCTCAAGACGTACGTCAATCTCCCGGCC
GCGCTCTTGATCACCATCGTGTATTCCAAGCTTTGCAATGCCATGCCCAT
GGCCAAGGTCTTTTACACGCTCATCACCCCGTTCCTGGCGTTTTTTGCCT
CCTTCGCCTTCCTCATCTACCCCAACCGGAATATCCTCCACCCTAACGCC
GCCGCGGATCACTTGCAGAAGATCCTGCCTGCATCATTCGGTGCCTTGAT
CTCGATCTTCCGTAATTGGACATACGCCTTGTTCTACACGATGGCTGAGC
TGTGGGGGTCTGTGGTGGTGTCTCTGTTGTTTTGGGGGTTCGCGAATGAG
GTGACCACCGTGCCGGAGGCGAAGAAGTACTATCCTTTGTTTGGGTTGGG
GGCGAACGTGGCGCTGATTTTCTCGGGGCAGTACGTGCGTTTCGTGTCTA
GCATTAGGAAGGGGCTGCCGGATGGCGTGGATAAATGGGGTGTGTCTCTG
AAGCTGCTCATGGGCGCGGTGGTGGCTCTTGGAACGGTCATGGTCGGGGC
GTACACGCACATGCAACGCAATGTCCTGACGGACCCCGAGTGCTACAGCG
CGGAAAAGCAGAAGAAGAGCAGCAAGAAGAGTGCGACGAACATGACGTTG
AAGGAGTCGGCGCAGTATCTGTTCAAGAGCAAGTACATCCGGGACTTGGC
TACCTTGGTCATTGCCTACGGGATGTCCATCAACATTGTGGAGGTCACGT
GGAAGGGCAAACTCAAGGAAGCCTTCCCTGACCCCAACGCTTACTCTGCT
TTCATGGGCAACTTCTCAACAGCCACGGGGTGCGTTACGCTGATCATGAT
GCTCTTAGGCCGAACCATCTTCCAGAAGTACGGGTGGGGTGTCGCGGCGT
TAATCACCCCTGTCATGCTCCTGGCGACGGGGGTGGCCTTTTTCTCCTTG
ATTATTTTCAACGGATTTTTTTCCCCGGTAACGGCAGCGTTGGGAATGAC
GCCGTTGATGCTGGCGGTCATTATTGGGGCCGCGCAGAATGTTTTGTCCA
AGTCGAGCAAGTACTCTCTGTTTGACCCGTGCAAAGAGATGGCGTACATT
CCCTTGGATGCCGAGCAGAAGACTAAGGGCAAGGCCGCCGTGGACGTCAT
CGGGAACCCCCTGGGCAAGTCAGGAGGGTCGTTCATCCAGCAGATTTTGA
TCTTGGGGTTGGGGAGCTTGTCGGCGTCGACGCCCTACCTGGCCGGCATT
ATCTTCTTGATTGTGGGGGCGTGGATCAATGCGGCCAATTCGCTGTCGAA
GCAATTTAAGGAGAAGATGGAGGCCAATCCGAATGCGGAGCATTAAATGT
CGAGAATCATTCTCACTGCCTGCCTTTTGGCGGGGTGCGTCCAGGGCTTC
CAGTCCTCGGGCTTCCGACCCAGCTTCGCTCTTTCCAGGAAAAGCTATGC
ACTCATTGCACCTTCTAAGGCCTTGCCCGACAGTCTTCGTCAACGTCATG
GTGGTGCCAGTGCGACCGGCCTTCCGCGCTCCTTGCCCCGCGTTTCCTCC
ACCGCCGCCTCCATCGTCGAGAACTCCGGCGCGGTCCCCGAGAAGACCAC
GTGGTGGCAACGCTTCAAGGCCCAGCTCCCCACCAAGGTGGAACGCAAGA
AGATTTTACCCTTGACGCTCATGTTCTTCTGCATGTTGTTTAACTACACC
ATCCTGCGTGACACTAAGGACGTGCTCGTGGTGACTGCCCCTCAGTCCGG
CGCGGAGGTTATTCCCTTCCTCAAGACGTACGTCAATCTCCCGGCCGCGC
TCTTGATCACCATCGTGTATTCCAAGCTTTGCAATGCCATGCCCATGGCC
AAGGTCTTTTACACGCTCATCACCCCGTTCCTGGCGTTTTTTGCCTCCTT
CGCCTTCCTCATCTACCCCAACCGGAATATCCTCCACCCTAACGCCGCCG
CGGATCACTTGCAGAAGATCCTGCCTGCATCATTCGGTGCCTTGATCTCG
ATCTTCCGTAATTGGACATACGCCTTGTTCTACACGATGGCTGAGCTGTG
GGGGTCTGTGGTGGTGTCTCTGTTGTTTTGGGGGTTCGCGAATGAGGTGA
CCACCGTGCCGGAGGCGAAGAAGTACTATCCTTTGTTTGGGTTGGGGGCG
AACGTGGCGCTGATTTTCTCGGGGCAGTACGTGCGTTTCGTGTCTAGCAT
TAGGAAGGGGCTGCCGGATGGCGTGGATAAATGGGGTGTGTCTCTGAAGC
TGCTCATGGGCGCGGTGGTGGCTCTTGGAACGGTCATGGTCGGGGCGTAC
ACGCACATGCAACGCAATGTCCTGACGGACCCCGAGTGCTACAGCGCGGA
AAAGCAGAAGAAGAGCAGCAAGAAGAGTGCGACGAACATGACGTTGAAGG
AGTCGGCGCAGTATCTGTTCAAGAGCAAGTACATCCGGGACTTGGCTACC
TTGGTCATTGCCTACGGGATGTCCATCAACATTGTGGAGGTCACGTGGAA
GGGCAAACTCAAGGAAGCCTTCCCTGACCCCAACGCTTACTCTGCTTTCA
TGGGCAACTTCTCAACAGCCACGGGGTGCGTTACGCTGATCATGATGCTC
TTAGGCCGAACCATCTTCCAGAAGTACGGGTGGGGTGTCGCGGCGTTAAT
CACCCCTGTCATGCTCCTGGCGACGGGGGTGGCCTTTTTCTCCTTGATTA
TTTTCAACGGATTTTTTTCCCCGGTAACGGCAGCGTTGGGAATGACGCCG
TTGATGCTGGCGGTCATTATTGGGGCCGCGCAGAATGTTTTGTCCAAGTC
GAGCAAGTACTCTCTGTTTGACCCGTGCAAAGAGATGGCGTACATTCCCT
TGGATGCCGAGCAGAAGACTAAGGGCAAGGCCGCCGTGGACGTCATCGGG
AACCCCCTGGGCAAGTCAGGAGGGTCGTTCATCCAGCAGATTTTGATCTT
GGGGTTGGGGAGCTTGTCGGCGTCGACGCCCTACCTGGCCGGCATTATCT
TCTTGATTGTGGGGGCGTGGATCAATGCGGCCAATTCGCTGTCGAAGCAA
TTTAAGGAGAAGATGGAGGCCAATCCGAATGCGGAGCATTAA back to top
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