jgi.p|Nanoce1779_2|582416, mRNA_3509 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582416
Unique NamemRNA_3509
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1828
Alignment locationscaffold_6:535919..537746 -

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Properties
Property NameValue
TranscriptId582502
TrackFilteredModels2
ProteinId582416
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:535919..537746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582416gene_3509Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582416mRNA_3509-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3509CDS_3509Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3509 ID=mRNA_3509|Name=jgi.p|Nanoce1779_2|582416|organism=Nannochloropsis oceanica|type=mRNA|length=1828bp
GGTGGGGGAGGGAGAGAGAGATGGATGGAAAGGCGGGAGTAGTAGTGGTG
ATAGCAATAGCATGAGGCATGGGGGGAGCAGCAGCAAAAACAGCAGCAAC
AGCAGTGGGCTGAATTTGCAAGGGAACGAGGAGACATCCGTGGAAGATGA
TGATACTTCCGCCTCGGCTCGCTCTGGCAGTAGTAGCAGCAGCAGCCCCT
ACTCCAGCGGTGGTGGCCATAATAATCGTTCCTCCTCCCACTACCATCAA
CACCGGCAGAACCAGCAGCACTATGAAGAGCACGAGCAACAGCAGCAGCA
CACAGAATTATCTAGCCTGCTCATTCCGAGTGAAAGGAATGCGACGGCGG
CTGCAATGGCGGGACGGGTCTTTAGCAGCTACTCCCTGGCAGAAGACGGG
AGCGAGAGTCGCAGGCCCGTTATATCTCCTTCTTGCATGGTCTATGGAGG
AGCCCAACAAGTTGTTGGGGGAGATGTGGGCAATAGCAGTGGCAGCAGCA
GGCAGCAGCAGCAGCAGCTGTGGATAGGCGCGATGGAGGATGCCTGGTGG
GTTGGGAGTGGGCCGGGCGGGAGTGAGCCTGGTGCCAACGCGAGCACGTG
TAGCGATATACAGGCACCGAGTGGTAGCATTGGTAATGGAGAGGGACAAG
AACAAGAAGTAGGTGATCGAGCGATGAAGCGAGCTTATTCTTCCTTGGAG
GGAGGAGAGGAGGAGCAACAGCAGCTGGGAAGGGCGGCGACGGCGGAGGA
GGGTGCGCAGGCTCGGGCGGTGGAGCGAGAGGAGATGTTGCATTTTTTGC
AGGAGTACTTTTAGATGAGAGGCCCGACAAAAAGGATAAGGGTACGAGTG
AGTGTGCATGAGGGAGGTCTTGAAGGAAAGAGAGATCTGAATGGAGAGAG
AGAAAGAAAGTTTAAGGGAGATCGGAAAAATGCAAGTCACCAGGATTTTG
TAAACTACCGTTGAGAGCAAATAGGAAATGCAAAACAGGAGCCTTAAATC
ATCCCAACAAGAAAGCCTATCAAATAATATGGGCTGAGTGAGTGAATGAA
CTTGTTTCTGTGTGTAAGTGTGTAATTAGCGAGTTGTGATCCAGTCAACC
AGCCAGCCGAGAATGAGCGCGGCGGAAGTGTATGACTCGCAGGTTTACAG
ATGCAGGCCGGGAGAGACGAGAGCGCAGCGATGTGTTCTACTCATAGAGA
ATATCTCGAACGAGCGAGTGAGATCGAGAGAGAAAATAGAGAGCAGATAA
AACTACCTACCAGTCACGTCAAAAAAAGCAAGGCGGAGCAAGAAAAGAGA
GGCGGGGAGAGAAAAGAGGGATCCGGAACTCTCCCGTGTGTATAGGAGTA
TTATTACCAGTCCATTTCTTCAAGAGATTTGAATTTGAAATTCGTAATTT
TACAATTATTTCCCGAGCAAACACCAACCCAACCCCCCCGCCTGATTTCC
AGGCTATACAAAAATCTATTTATGCACGAACAACCAGCAGGAGCTGTGAT
AACAGCAGTAGTAGCTTATGAACGATCAGCCAAGCCAAACAAAATCATGA
TCAGGGTATCAATCAAGTAGGGTAATTTTGACGTGTTTAAAAGTGAGACG
AGAGGAAATAAAAAAAGCGGAAAAAACCGAAACCATCCAGCCAGTATGCA
GCGAGAAGAACATCAACAAATCAACGTACCCACTTCGTTCATTTCTCTCT
TTTCTGCTTCACTTTTTCTCCTCGCAGCCTCCGTCCGCTTTCGTGGAGAA
AACGACGGGCGGCGGAGGAAAAGAAAGATTGAAGAGCATTACACAGGGGA
GAGGTAAAAAAGTTGAAACAAAAGCCCC
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protein sequence of jgi.p|Nanoce1779_2|582416

>mRNA_3509-protein ID=mRNA_3509-protein|Name=jgi.p|Nanoce1779_2|582416|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MRHGGSSSKNSSNSSGLNLQGNEETSVEDDDTSASARSGSSSSSSPYSSG
GGHNNRSSSHYHQHRQNQQHYEEHEQQQQHTELSSLLIPSERNATAAAMA
GRVFSSYSLAEDGSESRRPVISPSCMVYGGAQQVVGGDVGNSSGSSRQQQ
QQLWIGAMEDAWWVGSGPGGSEPGANASTCSDIQAPSGSIGNGEGQEQEV
GDRAMKRAYSSLEGGEEEQQQLGRAATAEEGAQARAVEREEMLHFLQEYF
*
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mRNA from alignment at scaffold_6:535919..537746-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3509 ID=mRNA_3509|Name=jgi.p|Nanoce1779_2|582416|organism=Nannochloropsis oceanica|type=mRNA|length=1828bp|location=Sequence derived from alignment at scaffold_6:535919..537746- (Nannochloropsis oceanica)
GGTGGGGGAGGGAGAGAGAGATGGATGGAAAGGCGGGAGTAGTAGTGGTG
ATAGCAATAGCATGAGGCATGGGGGGAGCAGCAGCAAAAACAGCAGCAAC
AGCAGTGGGCTGAATTTGCAAGGGAACGAGGAGACATCCGTGGAAGATGA
TGATACTTCCGCCTCGGCTCGCTCTGGCAGTAGTAGCAGCAGCAGCCCCT
ACTCCAGCGGTGGTGGCCATAATAATCGTTCCTCCTCCCACTACCATCAA
CACCGGCAGAACCAGCAGCACTATGAAGAGCACGAGCAACAGCAGCAGCA
CACAGAATTATCTAGCCTGCTCATTCCGAGTGAAAGGAATGCGACGGCGG
CTGCAATGGCGGGACGGGTCTTTAGCAGCTACTCCCTGGCAGAAGACGGG
AGCGAGAGTCGCAGGCCCGTTATATCTCCTTCTTGCATGGTCTATGGAGG
AGCCCAACAAGTTGTTGGGGGAGATGTGGGCAATAGCAGTGGCAGCAGCA
GGCAGCAGCAGCAGCAGCTGTGGATAGGCGCGATGGAGGATGCCTGGTGG
GTTGGGAGTGGGCCGGGCGGGAGTGAGCCTGGTGCCAACGCGAGCACGTG
TAGCGATATACAGGCACCGAGTGGTAGCATTGGTAATGGAGAGGGACAAG
AACAAGAAGTAGGTGATCGAGCGATGAAGCGAGCTTATTCTTCCTTGGAG
GGAGGAGAGGAGGAGCAACAGCAGCTGGGAAGGGCGGCGACGGCGGAGGA
GGGTGCGCAGGCTCGGGCGGTGGAGCGAGAGGAGATGTTGCATTTTTTGC
AGGAGTACTTTTAGATGAGAGGCCCGACAAAAAGGATAAGGGTACGAGTG
AGTGTGCATGAGGGAGGTCTTGAAGGAAAGAGAGATCTGAATGGAGAGAG
AGAAAGAAAGTTTAAGGGAGATCGGAAAAATGCAAGTCACCAGGATTTTG
TAAACTACCGTTGAGAGCAAATAGGAAATGCAAAACAGGAGCCTTAAATC
ATCCCAACAAGAAAGCCTATCAAATAATATGGGCTGAGTGAGTGAATGAA
CTTGTTTCTGTGTGTAAGTGTGTAATTAGCGAGTTGTGATCCAGTCAACC
AGCCAGCCGAGAATGAGCGCGGCGGAAGTGTATGACTCGCAGGTTTACAG
ATGCAGGCCGGGAGAGACGAGAGCGCAGCGATGTGTTCTACTCATAGAGA
ATATCTCGAACGAGCGAGTGAGATCGAGAGAGAAAATAGAGAGCAGATAA
AACTACCTACCAGTCACGTCAAAAAAAGCAAGGCGGAGCAAGAAAAGAGA
GGCGGGGAGAGAAAAGAGGGATCCGGAACTCTCCCGTGTGTATAGGAGTA
TTATTACCAGTCCATTTCTTCAAGAGATTTGAATTTGAAATTCGTAATTT
TACAATTATTTCCCGAGCAAACACCAACCCAACCCCCCCGCCTGATTTCC
AGGCTATACAAAAATCTATTTATGCACGAACAACCAGCAGGAGCTGTGAT
AACAGCAGTAGTAGCTTATGAACGATCAGCCAAGCCAAACAAAATCATGA
TCAGGGTATCAATCAAGTAGGGTAATTTTGACGTGTTTAAAAGTGAGACG
AGAGGAAATAAAAAAAGCGGAAAAAACCGAAACCATCCAGCCAGTATGCA
GCGAGAAGAACATCAACAAATCAACGTACCCACTTCGTTCATTTCTCTCT
TTTCTGCTTCACTTTTTCTCCTCGCAGCCTCCGTCCGCTTTCGTGGAGAA
AACGACGGGCGGCGGAGGAAAAGAAAGATTGAAGAGCATTACACAGGGGA
GAGGTAAAAAAGTTGAAACAAAAGCCCC
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Coding sequence (CDS) from alignment at scaffold_6:535919..537746-

>mRNA_3509 ID=mRNA_3509|Name=jgi.p|Nanoce1779_2|582416|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_6:535919..537746- (Nannochloropsis oceanica)
ATGAGGCATGGGGGGAGCAGCAGCAAAAACAGCAGCAACAGCAGTGGGCT
GAATTTGCAAGGGAACGAGGAGACATCCGTGGAAGATGATGATACTTCCG
CCTCGGCTCGCTCTGGCAGTAGTAGCAGCAGCAGCCCCTACTCCAGCGGT
GGTGGCCATAATAATCGTTCCTCCTCCCACTACCATCAACACCGGCAGAA
CCAGCAGCACTATGAAGAGCACGAGCAACAGCAGCAGCACACAGAATTAT
CTAGCCTGCTCATTCCGAGTGAAAGGAATGCGACGGCGGCTGCAATGGCG
GGACGGGTCTTTAGCAGCTACTCCCTGGCAGAAGACGGGAGCGAGAGTCG
CAGGCCCGTTATATCTCCTTCTTGCATGGTCTATGGAGGAGCCCAACAAG
TTGTTGGGGGAGATGTGGGCAATAGCAGTGGCAGCAGCAGGCAGCAGCAG
CAGCAGCTGTGGATAGGCGCGATGGAGGATGCCTGGTGGGTTGGGAGTGG
GCCGGGCGGGAGTGAGCCTGGTGCCAACGCGAGCACGTGTAGCGATATAC
AGGCACCGAGTGGTAGCATTGGTAATGGAGAGGGACAAGAACAAGAAGTA
GGTGATCGAGCGATGAAGCGAGCTTATTCTTCCTTGGAGGGAGGAGAGGA
GGAGCAACAGCAGCTGGGAAGGGCGGCGACGGCGGAGGAGGGTGCGCAGG
CTCGGGCGGTGGAGCGAGAGGAGATGTTGCATTTTTTGCAGGAGTACTTT
TAG
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Synonyms
Publications