jgi.p|Nanoce1779_2|582413, mRNA_3508 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582413
Unique NamemRNA_3508
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1090
Alignment locationscaffold_6:534344..535433 +

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Properties
Property NameValue
TranscriptId582499
TrackFilteredModels2
ProteinId582413
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:534344..535433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582413gene_3508Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582413mRNA_3508-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3508CDS_3508Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3508 ID=mRNA_3508|Name=jgi.p|Nanoce1779_2|582413|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp
AGCTTCCTCCTGGGAGGGAAGAAGAACAAAAGCTGTGTCTGGCAGGTGTG
TACGCGACTGTACCTATCTACATCCCTAGAAGCGCGTCTTTGCTTCCCAT
CACTCCGCTTATCGCCTGCCCTAAACCCTCGGCTTCCCTCCGTCCCAAAC
GACCCCCACACGACACAGCACTCTTCAACCCAAGCGTAAGCTCCAACAGC
AACAGCAAGTTATGTCCTCATCGCAAGGATGGGCGCAGTACCTGGCTCGT
GGCGTGCCCCCCCAGAAGCGGTACCTGATCGGCGGCAACTGGAAGGCTAA
TGGGACCCTGGCCCAAGCCGCTGGCATTGTGAAGACCCTGAATGGCGGCG
GGCCTTTTCCATTGGAAGCCGAGGTGGTGATAGCGCCCCCCGCGCACCTG
TTGGGATTCGTCAAGGACAACGTACGCCCCGATGTGGCTGTTTCGGCTCA
GAACTCGGCCTTGACCACTAAAGCCGGGGCTTTTACGGGCGAGCTGCCCG
CGGCGCTCTTGAAGGACTTCGGGTTGAACTGGGCCATTATCGGGCACTCA
GAGCGTAGGGAGGGTTTTGGTGGGCCGGGGGAGACGGACGAAGTGGTGGC
GACCAAGACCAAGGTGGCCGTGGACGCGGGTTTACACGTCATGGCATGTG
TGGGGGAGAAATTGGAGCAGCGGGAGGCAGGGCAAACGACCGAGGTAGTG
TTGAAGCAGCTGAGCGCGATTGCCTCCAAGTTGACCAAGTCGGACTGGTC
CAAGGTGGTGGTGGCGTACGAGCCGGTGTGGGCCATTGGCACGGGCAAGG
TGGCAACACCGGAACAGGCCCAGGATGTGCATGCGTCCATTCGCGCGTTC
TTGACCGAGAAGATTGGGGCGAGCGCGGCGTCGTTAGTTCGGATTATTTA
TGGGGGGTCCGTGAAGGGCTCGTCAGCCCCGGGACTGATTTTGAAGCCGG
ACATCGACGGGTTTCTGGTGGGGGGGGCGTCGTTGACGAGTGACTTTATC
ACGATTATCCAGGCAGCCAAAAGCTCATAAATAGGGGAAGGAAGGAAGGG
AGTGCTAGAGGGGAGCACGCACGTGAGAGATCCTCTCGGT
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protein sequence of jgi.p|Nanoce1779_2|582413

>mRNA_3508-protein ID=mRNA_3508-protein|Name=jgi.p|Nanoce1779_2|582413|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MSSSQGWAQYLARGVPPQKRYLIGGNWKANGTLAQAAGIVKTLNGGGPFP
LEAEVVIAPPAHLLGFVKDNVRPDVAVSAQNSALTTKAGAFTGELPAALL
KDFGLNWAIIGHSERREGFGGPGETDEVVATKTKVAVDAGLHVMACVGEK
LEQREAGQTTEVVLKQLSAIASKLTKSDWSKVVVAYEPVWAIGTGKVATP
EQAQDVHASIRAFLTEKIGASAASLVRIIYGGSVKGSSAPGLILKPDIDG
FLVGGASLTSDFITIIQAAKSS*
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mRNA from alignment at scaffold_6:534344..535433+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3508 ID=mRNA_3508|Name=jgi.p|Nanoce1779_2|582413|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp|location=Sequence derived from alignment at scaffold_6:534344..535433+ (Nannochloropsis oceanica)
AGCTTCCTCCTGGGAGGGAAGAAGAACAAAAGCTGTGTCTGGCAGGTGTG
TACGCGACTGTACCTATCTACATCCCTAGAAGCGCGTCTTTGCTTCCCAT
CACTCCGCTTATCGCCTGCCCTAAACCCTCGGCTTCCCTCCGTCCCAAAC
GACCCCCACACGACACAGCACTCTTCAACCCAAGCGTAAGCTCCAACAGC
AACAGCAAGTTATGTCCTCATCGCAAGGATGGGCGCAGTACCTGGCTCGT
GGCGTGCCCCCCCAGAAGCGGTACCTGATCGGCGGCAACTGGAAGGCTAA
TGGGACCCTGGCCCAAGCCGCTGGCATTGTGAAGACCCTGAATGGCGGCG
GGCCTTTTCCATTGGAAGCCGAGGTGGTGATAGCGCCCCCCGCGCACCTG
TTGGGATTCGTCAAGGACAACGTACGCCCCGATGTGGCTGTTTCGGCTCA
GAACTCGGCCTTGACCACTAAAGCCGGGGCTTTTACGGGCGAGCTGCCCG
CGGCGCTCTTGAAGGACTTCGGGTTGAACTGGGCCATTATCGGGCACTCA
GAGCGTAGGGAGGGTTTTGGTGGGCCGGGGGAGACGGACGAAGTGGTGGC
GACCAAGACCAAGGTGGCCGTGGACGCGGGTTTACACGTCATGGCATGTG
TGGGGGAGAAATTGGAGCAGCGGGAGGCAGGGCAAACGACCGAGGTAGTG
TTGAAGCAGCTGAGCGCGATTGCCTCCAAGTTGACCAAGTCGGACTGGTC
CAAGGTGGTGGTGGCGTACGAGCCGGTGTGGGCCATTGGCACGGGCAAGG
TGGCAACACCGGAACAGGCCCAGGATGTGCATGCGTCCATTCGCGCGTTC
TTGACCGAGAAGATTGGGGCGAGCGCGGCGTCGTTAGTTCGGATTATTTA
TGGGGGGTCCGTGAAGGGCTCGTCAGCCCCGGGACTGATTTTGAAGCCGG
ACATCGACGGGTTTCTGGTGGGGGGGGCGTCGTTGACGAGTGACTTTATC
ACGATTATCCAGGCAGCCAAAAGCTCATAAATAGGGGAAGGAAGGAAGGG
AGTGCTAGAGGGGAGCACGCACGTGAGAGATCCTCTCGGT
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Coding sequence (CDS) from alignment at scaffold_6:534344..535433+

>mRNA_3508 ID=mRNA_3508|Name=jgi.p|Nanoce1779_2|582413|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_6:534344..535433+ (Nannochloropsis oceanica)
ATGTCCTCATCGCAAGGATGGGCGCAGTACCTGGCTCGTGGCGTGCCCCC
CCAGAAGCGGTACCTGATCGGCGGCAACTGGAAGGCTAATGGGACCCTGG
CCCAAGCCGCTGGCATTGTGAAGACCCTGAATGGCGGCGGGCCTTTTCCA
TTGGAAGCCGAGGTGGTGATAGCGCCCCCCGCGCACCTGTTGGGATTCGT
CAAGGACAACGTACGCCCCGATGTGGCTGTTTCGGCTCAGAACTCGGCCT
TGACCACTAAAGCCGGGGCTTTTACGGGCGAGCTGCCCGCGGCGCTCTTG
AAGGACTTCGGGTTGAACTGGGCCATTATCGGGCACTCAGAGCGTAGGGA
GGGTTTTGGTGGGCCGGGGGAGACGGACGAAGTGGTGGCGACCAAGACCA
AGGTGGCCGTGGACGCGGGTTTACACGTCATGGCATGTGTGGGGGAGAAA
TTGGAGCAGCGGGAGGCAGGGCAAACGACCGAGGTAGTGTTGAAGCAGCT
GAGCGCGATTGCCTCCAAGTTGACCAAGTCGGACTGGTCCAAGGTGGTGG
TGGCGTACGAGCCGGTGTGGGCCATTGGCACGGGCAAGGTGGCAACACCG
GAACAGGCCCAGGATGTGCATGCGTCCATTCGCGCGTTCTTGACCGAGAA
GATTGGGGCGAGCGCGGCGTCGTTAGTTCGGATTATTTATGGGGGGTCCG
TGAAGGGCTCGTCAGCCCCGGGACTGATTTTGAAGCCGGACATCGACGGG
TTTCTGGTGGGGGGGGCGTCGTTGACGAGTGACTTTATCACGATTATCCA
GGCAGCCAAAAGCTCATAA
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Synonyms
Publications