jgi.p|Nanoce1779_2|582405, mRNA_3506 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582405
Unique NamemRNA_3506
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length390
Alignment locationscaffold_6:530121..530644 -

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Properties
Property NameValue
TranscriptId582491
TrackFilteredModels2
ProteinId582405
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:530121..530644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582405gene_3506Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582405mRNA_3506-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3506CDS_3506Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3506 ID=mRNA_3506|Name=jgi.p|Nanoce1779_2|582405|organism=Nannochloropsis oceanica|type=mRNA|length=390bp
CTGGCTACCAATTGGCAATTCTATTTCCCACGTTTTCACTCCCTTTTACT
CATCACCTTATCCCACCACCCCGTCCATCCCTACCTAGCACGCGCCCCCC
CCACACTCAATGCTTTCCTGCTCTCTATATACAATTTTGCTTGCGTGGTC
AGACGTTCGTTTAAAGTTTCCTTCCTCCGTAGCCATACTTCTTGTTCATC
AAAAAATTGAAGTTGTCCTGCTGGATGTGGCGGGGCTTCTTATAGATCCA
GTTGGCCAAGCCGTCGACGCCCGCGAACATAGCGCCCACCAAAGAGAAAC
CACCGATAATCACAAGCATCCCAGGGGCCGTTTGCCACGCCATTTTCCTA
TTTCTGTCTTTTTCTGAAAGAAGAAAGAGAAAGAACCTGT
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protein sequence of jgi.p|Nanoce1779_2|582405

>mRNA_3506-protein ID=mRNA_3506-protein|Name=jgi.p|Nanoce1779_2|582405|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MLSCSLYTILLAWSDVRLKFPSSVAILLVHQKIEVVLLDVAGLLIDPVGQ
AVDAREHSAHQRETTDNHKHPRGRLPRHFPISVFF*
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mRNA from alignment at scaffold_6:530121..530644-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3506 ID=mRNA_3506|Name=jgi.p|Nanoce1779_2|582405|organism=Nannochloropsis oceanica|type=mRNA|length=524bp|location=Sequence derived from alignment at scaffold_6:530121..530644- (Nannochloropsis oceanica)
CTGGCTACCAATTGGCAATTCTATTTCCCACGTTTTCACTCCCTTTTACT
CATCACCTTATCCCACCACCCCGTCCATCCCTACCTAGCACGCGCCCCCC
CCACACTCAATGCTTTCCTGCTCTCTATATACAATTTTGCTTGCGTGGTC
AGACGTTCGTTTAAAGTTTCCTTCCTCCGTAGCCATACTTCTTGTTCATC
AAAAAATTGAAGTTGTCCTGCTGGATGTGGCGGGGCTGTGCGTGTGTGCA
AAAAGGTGGGGAGGAGAGCATCAAGGTAAGCTTGTCGGAAACAAGTGGAC
CCATACGTGCAAGGCCTAAGCGCTTACAACGGGAGAGTCCACGTCCTTTT
CTAATGAATAAACACATACCTTCTTATAGATCCAGTTGGCCAAGCCGTCG
ACGCCCGCGAACATAGCGCCCACCAAAGAGAAACCACCGATAATCACAAG
CATCCCAGGGGCCGTTTGCCACGCCATTTTCCTATTTCTGTCTTTTTCTG
AAAGAAGAAAGAGAAAGAACCTGT
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Coding sequence (CDS) from alignment at scaffold_6:530121..530644-

>mRNA_3506 ID=mRNA_3506|Name=jgi.p|Nanoce1779_2|582405|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_6:530121..530644- (Nannochloropsis oceanica)
CTTCTTATAGATCCAGTTGGCCAAGCCGTCGACGCCCGCGAACATAGCGC
CCACCAAAGAGAAACCACCGATAATCACAAGCATCCCAGGGGCCGTTTGC
CACGCCATTTTCCTATTTCTGTCTTTTTCTGAATGCTTTCCTGCTCTCTA
TATACAATTTTGCTTGCGTGGTCAGACGTTCGTTTAAAGTTTCCTTCCTC
CGTAGCCATACTTCTTGTTCATCAAAAAATTGAAGTTGTCCTGCTGGATG
TGGCGGGGCTTCTTATAGATCCAGTTGGCCAAGCCGTCGACGCCCGCGAA
CATAGCGCCCACCAAAGAGAAACCACCGATAATCACAAGCATCCCAGGGG
CCGTTTGCCACGCCATTTTCCTATTTCTGTCTTTTTCTGAATGCTTTCCT
GCTCTCTATATACAATTTTGCTTGCGTGGTCAGACGTTCGTTTAAAGTTT
CCTTCCTCCGTAGCCATACTTCTTGTTCATCAAAAAATTGAAGTTGTCCT
GCTGGATGTGGCGGGG
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Synonyms
Publications