jgi.p|Nanoce1779_2|582399, mRNA_3504 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582399
Unique Name	mRNA_3504
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1441
Alignment location	scaffold_6:525177..526953 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582485
Track	FilteredModels2
ProteinId	582399

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:525177..526953 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582399	gene_3504	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582399	mRNA_3504-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3504	CDS_3504	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:525177..526953+
coding sequence from alignment at scaffold_6:525177..526953+

mRNA sequence

>mRNA_3504 ID=mRNA_3504|Name=jgi.p|Nanoce1779_2|582399|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp
AACAACAGATGCAGCATGCGAGTGGTATATCTCGGACTTTGCGATGATCT
GTCGCCAAGCCGCAACTGGTTGGATGGTGCTGTTTCTTTAAGTAGTGGGT
ATCTTGTGCTTTTACCGACGGATGGGAAAGTTGCCGTTGTGCGGGTACCA
TTGGCGCAAGACCTGAGGGACGACTCACCTCGAGTCATGCTTCTAAACTC
TCTCGAAACTATAGAAGAGGGGGGAACTTTTGATCATGGAGCTGTTTGTC
CGAGCGGAAGCCGGATCGCGCTCGCCTACACGTGCAGCTCCCTGCACATC
CACAACATTTTAAGCAGTGCGGGGGACAGTGAGAAAATCCAGCATATCTC
CCGATCGATAAGAAAAAGCCCCGATCCGATACGCAGATCAAAGAGGCTTC
GACACGTGGCTTGGCAGGTGCTTCCTTGTGGTTACGTCGTCGGCGCGGCG
AATGCCAAGCATTTGACCATATACGATGCTTGGGAGTCGATAGATTCAAA
TCTTCGTGTTCTTGGTGGGATCAAGTCTTCAGAGCCCATTGATGGGTGGA
CATGGCTGAGTAACCGGGACAGAATCGCTCTCTTGGCGGGAAACAAAGTG
AGCATTCACGATCGAGTTTTGTCCAAGGATTATGAGCAAAATCCATCATT
CTTGCCTTCTCCGTCGCTGGGAGCGGCTGTGGAGAAGTGGAAGCGGCTGG
TGCCTTTGCCCGGGGGGGACGCTGGAACAGCCTTTGTCGCTGTCCTGACT
GAGCCATGCTTCTTGCAGGCTCAAATACGCGCGAAGACCGAGGATGGTCA
CGGGTTGAACGAGACACTGGAGGCACTCCGAACCGTGCAGGTCCAGCAGA
AGACGAAGAATAAATCAAAGAGAAAAGGAATGGAGAATCAGGGGGGCATT
ATTAAGGATGAGAGGGTCGAGGAAGAAGAGACAGCGGACAAGCAGGCAGA
TAGCGGTAGCAGCGGCAGCGGCAGTGACGCTGTTGTTGATCTGCGCGAGC
AATGATGATGGAGCCCAGCTCCTGCTTCTAAAAGTACCGGTAGCGTCATC
CTCAGGGCCATCAGACGAGCAAGAGGTGCTGCGTTCCATTCCGGTGGGGA
GAAATATCTGCCCCATGCCAGGACTCCTTGCCGCCTCGGAGGCCCACGTC
GCGATAGGTGACCCATGGTCGTCCACCATACTAATTCACCGCCTGTCCGA
TGACTTTCCTGCTGTGACATCGACGAAAGAGAAGCAATTAAAGATGCCAG
CTGGGTTGGTCCCCCGTGGTTTACGCTTTTTCGGTGATCATACCCTCGTT
TGTCTTGCTGTTGAGGCGGCAGGAGCTAAGGGCGGAGGCAGCGGAAGAGG
AAGAAAAGAAGGAGGAGGAGGAAAAGGAGGAAAAGGAGGAGACGGAGGAG
AAGGAGGAAAAAGAGGAGGAGGACGAGGAACATTGCAAGGG

protein sequence of jgi.p|Nanoce1779_2|582399

>mRNA_3504-protein ID=mRNA_3504-protein|Name=jgi.p|Nanoce1779_2|582399|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MRVVYLGLCDDLSPSRNWLDGAVSLSSGYLVLLPTDGKVAVVRVPLAQDL
RDDSPRVMLLNSLETIEEGGTFDHGAVCPSGSRIALAYTCSSLHIHNILS
SAGDSEKIQHISRSIRKSPDPIRRSKRLRHVAWQVLPCGYVVGAANAKHL
TIYDAWESIDSNLRVLGGIKSSEPIDGWTWLSNRDRIALLAGNKVSIHDR
VLSKDYEQNPSFLPSPSLGAAVEKWKRLVPLPGGDAGTAFVAVLTEPCFL
QAQIRAKTEDGHGLNETLEALRTVQVQQKTKNKSKRKGMENQGGIIKDER
VEEEETADKQADSGSSGSGSDAVVDLREQ*

mRNA from alignment at scaffold_6:525177..526953+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3504 ID=mRNA_3504|Name=jgi.p|Nanoce1779_2|582399|organism=Nannochloropsis oceanica|type=mRNA|length=1777bp|location=Sequence derived from alignment at scaffold_6:525177..526953+ (Nannochloropsis oceanica)
AACAACAGATGCAGCATGCGAGTGGTATATCTCGGACTTTGCGATGATCT
GTCGCCAAGCCGCAACTGGTTGGATGGTGAGTGCTCCCGCTACTGCCACA
GACAACCACCCTTACCCCGTGCTTAAGTTACCTTACAAGCCCCTTTTCGT
ACCCTAACCCTAGCTTGACGTCATCCAACCTTGCTTGATGTATTGACGAT
ACATTACAGGTGCTGTTTCTTTAAGTAGTGGGTATCTTGTGCTTTTACCG
ACGGATGGGAAAGTTGCCGTTGTGCGGGTACCATTGGCGCAAGACCTGAG
GGACGACTCACCTCGAGTCATGCTTCTAAACTCTCTCGAAACTATAGAAG
AGGGGGGAACTTTTGATCATGGAGCTGTTTGTCCGAGCGGAAGCCGGATC
GCGCTCGCCTACACGTGCAGCTCCCTGCACATCCACAACATTTTAAGCAG
TGCGGGGGACAGTGAGAAAATCCAGCATATCTCCCGATCGATAAGGTGTG
TGCCTACCAGAACGAGCTCGTCTATTTCTGTTGCATTATTCCAAATTTTC
TACATAACACGCACACACCACAGAAAAAGCCCCGATCCGATACGCAGATC
AAAGAGGCTTCGACACGTGGCTTGGCAGGTGCTTCCTTGTGGTTACGTCG
TCGGCGCGGCGAATGCCAAGCATTTGACCATATACGATGCTTGGGAGTCG
ATAGATTCAAATCTTCGTGTTCTTGGTGGGATCAAGTCTTCAGAGCCCAT
TGATGGGTGGACATGGCTGAGTAACCGGGACAGAATCGCTCTCTTGGCGG
GAAACAAAGTGAGCATTCACGATCGAGTTTTGTCCAAGGATTATGAGCAA
AATCCATCATTCTTGCCTTCTCCGTCGCTGGGAGCGGCTGTGGAGAAGTG
GAAGCGGCTGGTGCCTTTGCCCGGGGGGGACGCTGGAACAGCCTTTGTCG
CTGTCCTGACTGAGCCATGCTTCTTGCAGGCTCAAATACGCGCGAAGACC
GAGGATGGTCACGGGTTGAACGAGACACTGGAGGCACTCCGAACCGTGCA
GGTCCAGCAGAAGACGAAGAATAAATCAAAGAGAAAAGGAATGGAGAATC
AGGGGGGCATTATTAAGGATGAGAGGGTCGAGGAAGAAGAGACAGCGGAC
AAGCAGGCAGATAGCGGTAGCAGCGGCAGCGGCAGTGACGCTGTTGTTGA
TCTGCGCGGTAGGATTGGTGGAGGTGGAGGTGTCTCCGCTTCCTTTTCGT
TGTTGAATATCCTCACGGGAGGCATCACACGTCCTCCACGATGCACTGGA
CTATTCTTACCACCGCCACCCCCCGCGCAACAGAGCAATGATGATGGAGC
CCAGCTCCTGCTTCTAAAAGTACCGGTAGCGTCATCCTCAGGGCCATCAG
ACGAGCAAGAGGTGCTGCGTTCCATTCCGGTGGGGAGAAATATCTGCCCC
ATGCCAGGACTCCTTGCCGCCTCGGAGGCCCACGTCGCGATAGGTGACCC
ATGGTCGTCCACCATACTAATTCACCGCCTGTCCGATGACTTTCCTGCTG
TGACATCGACGAAAGAGAAGCAATTAAAGATGCCAGCTGGGTTGGTCCCC
CGTGGTTTACGCTTTTTCGGTGATCATACCCTCGTTTGTCTTGCTGTTGA
GGCGGCAGGAGCTAAGGGCGGAGGCAGCGGAAGAGGAAGAAAAGAAGGAG
GAGGAGGAAAAGGAGGAAAAGGAGGAGACGGAGGAGAAGGAGGAAAAAGA
GGAGGAGGACGAGGAACATTGCAAGGG

Coding sequence (CDS) from alignment at scaffold_6:525177..526953+

>mRNA_3504 ID=mRNA_3504|Name=jgi.p|Nanoce1779_2|582399|organism=Nannochloropsis oceanica|type=CDS|length=3960bp|location=Sequence derived from alignment at scaffold_6:525177..526953+ (Nannochloropsis oceanica)
ATGCGAGTGGTATATCTCGGACTTTGCGATGATCTGTCGCCAAGCCGCAA
CTGGTTGGATGGTGCTGTTTCTTTAAGTAGTGGGTATCTTGTGCTTTTAC
CGACGGATGGGAAAGTTGCCGTTGTGCGGGTACCATTGGCGCAAGACCTG
AGGGACGACTCACCTCGAGTCATGCTTCTAAACTCTCTCGAAACTATAGA
AGAGGGGGGAACTTTTGATCATGGAGCTGTTTGTCCGAGCGGAAGCCGGA
TCGCGCTCGCCTACACGTGCAGCTCCCTGCACATCCACAACATTTTAAGC
AGTGCGGGGGACAGTGAGAAAATCCAGCATATCTCCCGATCGATAAGAAA
AAGCCCCGATCCGATACGCAGATCAAAGAGGCTTCGACACGTGGCTTGGC
AGGTGCTTCCTTGTGGTTACGTCGTCGGCGCGGCGAATGCCAAGCATTTG
ACCATATACGATGCTTGGGAGTCGATAGATTCAAATCTTCGTGTTCTTGG
TGGGATCAAGTCTTCAGAGCCCATTGATGGGTGGACATGGCTGAGTAACC
GGGACAGAATCGCTCTCTTGGCGGGAAACAAAGTGAGCATTCACGATCGA
GTTTTGTCCAAGGATTATGAGCAAAATCCATCATTCTTGCCTTCTCCGTC
GCTGGGAGCGGCTGTGGAGAAGTGGAAGCGGCTGGTGCCTTTGCCCGGGG
GGGACGCTGGAACAGCCTTTGTCGCTGTCCTGACTGAGCCATGCTTCTTG
CAGGCTCAAATACGCGCGAAGACCGAGGATGGTCACGGGTTGAACGAGAC
ACTGGAGGCACTCCGAACCGTGCAGGTCCAGCAGAAGACGAAGAATAAAT
CAAAGAGAAAAGGAATGGAGAATCAGGGGGGCATTATTAAGGATGAGAGG
GTCGAGGAAGAAGAGACAGCGGACAAGCAGGCAGATAGCGGTAGCAGCGG
CAGCGGCAGTGACGCTGTTGTTGATCTGCGCGAGCAATGAATGCGAGTGG
TATATCTCGGACTTTGCGATGATCTGTCGCCAAGCCGCAACTGGTTGGAT
GGTGCTGTTTCTTTAAGTAGTGGGTATCTTGTGCTTTTACCGACGGATGG
GAAAGTTGCCGTTGTGCGGGTACCATTGGCGCAAGACCTGAGGGACGACT
CACCTCGAGTCATGCTTCTAAACTCTCTCGAAACTATAGAAGAGGGGGGA
ACTTTTGATCATGGAGCTGTTTGTCCGAGCGGAAGCCGGATCGCGCTCGC
CTACACGTGCAGCTCCCTGCACATCCACAACATTTTAAGCAGTGCGGGGG
ACAGTGAGAAAATCCAGCATATCTCCCGATCGATAAGAAAAAGCCCCGAT
CCGATACGCAGATCAAAGAGGCTTCGACACGTGGCTTGGCAGGTGCTTCC
TTGTGGTTACGTCGTCGGCGCGGCGAATGCCAAGCATTTGACCATATACG
ATGCTTGGGAGTCGATAGATTCAAATCTTCGTGTTCTTGGTGGGATCAAG
TCTTCAGAGCCCATTGATGGGTGGACATGGCTGAGTAACCGGGACAGAAT
CGCTCTCTTGGCGGGAAACAAAGTGAGCATTCACGATCGAGTTTTGTCCA
AGGATTATGAGCAAAATCCATCATTCTTGCCTTCTCCGTCGCTGGGAGCG
GCTGTGGAGAAGTGGAAGCGGCTGGTGCCTTTGCCCGGGGGGGACGCTGG
AACAGCCTTTGTCGCTGTCCTGACTGAGCCATGCTTCTTGCAGGCTCAAA
TACGCGCGAAGACCGAGGATGGTCACGGGTTGAACGAGACACTGGAGGCA
CTCCGAACCGTGCAGGTCCAGCAGAAGACGAAGAATAAATCAAAGAGAAA
AGGAATGGAGAATCAGGGGGGCATTATTAAGGATGAGAGGGTCGAGGAAG
AAGAGACAGCGGACAAGCAGGCAGATAGCGGTAGCAGCGGCAGCGGCAGT
GACGCTGTTGTTGATCTGCGCGAGCAATGAATGCGAGTGGTATATCTCGG
ACTTTGCGATGATCTGTCGCCAAGCCGCAACTGGTTGGATGGTGCTGTTT
CTTTAAGTAGTGGGTATCTTGTGCTTTTACCGACGGATGGGAAAGTTGCC
GTTGTGCGGGTACCATTGGCGCAAGACCTGAGGGACGACTCACCTCGAGT
CATGCTTCTAAACTCTCTCGAAACTATAGAAGAGGGGGGAACTTTTGATC
ATGGAGCTGTTTGTCCGAGCGGAAGCCGGATCGCGCTCGCCTACACGTGC
AGCTCCCTGCACATCCACAACATTTTAAGCAGTGCGGGGGACAGTGAGAA
AATCCAGCATATCTCCCGATCGATAAGAAAAAGCCCCGATCCGATACGCA
GATCAAAGAGGCTTCGACACGTGGCTTGGCAGGTGCTTCCTTGTGGTTAC
GTCGTCGGCGCGGCGAATGCCAAGCATTTGACCATATACGATGCTTGGGA
GTCGATAGATTCAAATCTTCGTGTTCTTGGTGGGATCAAGTCTTCAGAGC
CCATTGATGGGTGGACATGGCTGAGTAACCGGGACAGAATCGCTCTCTTG
GCGGGAAACAAAGTGAGCATTCACGATCGAGTTTTGTCCAAGGATTATGA
GCAAAATCCATCATTCTTGCCTTCTCCGTCGCTGGGAGCGGCTGTGGAGA
AGTGGAAGCGGCTGGTGCCTTTGCCCGGGGGGGACGCTGGAACAGCCTTT
GTCGCTGTCCTGACTGAGCCATGCTTCTTGCAGGCTCAAATACGCGCGAA
GACCGAGGATGGTCACGGGTTGAACGAGACACTGGAGGCACTCCGAACCG
TGCAGGTCCAGCAGAAGACGAAGAATAAATCAAAGAGAAAAGGAATGGAG
AATCAGGGGGGCATTATTAAGGATGAGAGGGTCGAGGAAGAAGAGACAGC
GGACAAGCAGGCAGATAGCGGTAGCAGCGGCAGCGGCAGTGACGCTGTTG
TTGATCTGCGCGAGCAATGAATGCGAGTGGTATATCTCGGACTTTGCGAT
GATCTGTCGCCAAGCCGCAACTGGTTGGATGGTGCTGTTTCTTTAAGTAG
TGGGTATCTTGTGCTTTTACCGACGGATGGGAAAGTTGCCGTTGTGCGGG
TACCATTGGCGCAAGACCTGAGGGACGACTCACCTCGAGTCATGCTTCTA
AACTCTCTCGAAACTATAGAAGAGGGGGGAACTTTTGATCATGGAGCTGT
TTGTCCGAGCGGAAGCCGGATCGCGCTCGCCTACACGTGCAGCTCCCTGC
ACATCCACAACATTTTAAGCAGTGCGGGGGACAGTGAGAAAATCCAGCAT
ATCTCCCGATCGATAAGAAAAAGCCCCGATCCGATACGCAGATCAAAGAG
GCTTCGACACGTGGCTTGGCAGGTGCTTCCTTGTGGTTACGTCGTCGGCG
CGGCGAATGCCAAGCATTTGACCATATACGATGCTTGGGAGTCGATAGAT
TCAAATCTTCGTGTTCTTGGTGGGATCAAGTCTTCAGAGCCCATTGATGG
GTGGACATGGCTGAGTAACCGGGACAGAATCGCTCTCTTGGCGGGAAACA
AAGTGAGCATTCACGATCGAGTTTTGTCCAAGGATTATGAGCAAAATCCA
TCATTCTTGCCTTCTCCGTCGCTGGGAGCGGCTGTGGAGAAGTGGAAGCG
GCTGGTGCCTTTGCCCGGGGGGGACGCTGGAACAGCCTTTGTCGCTGTCC
TGACTGAGCCATGCTTCTTGCAGGCTCAAATACGCGCGAAGACCGAGGAT
GGTCACGGGTTGAACGAGACACTGGAGGCACTCCGAACCGTGCAGGTCCA
GCAGAAGACGAAGAATAAATCAAAGAGAAAAGGAATGGAGAATCAGGGGG
GCATTATTAAGGATGAGAGGGTCGAGGAAGAAGAGACAGCGGACAAGCAG
GCAGATAGCGGTAGCAGCGGCAGCGGCAGTGACGCTGTTGTTGATCTGCG
CGAGCAATGA

Synonyms

Publications