jgi.p|Nanoce1779_2|669467, mRNA_3503 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669467
Unique NamemRNA_3503
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length806
Alignment locationscaffold_6:523954..525092 -

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Properties
Property NameValue
TranscriptId669553
TrackFilteredModels2
ProteinId669467
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:523954..525092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669467gene_3503Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669467mRNA_3503-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3503CDS_3503Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3503 ID=mRNA_3503|Name=jgi.p|Nanoce1779_2|669467|organism=Nannochloropsis oceanica|type=mRNA|length=806bp
ACCCACGCACAGAGTTCTCAGTACAATAATTTGAAGCTACCATGAGGTCT
ACGTACGAATCTGTCATCAAATTATGCGTGAGGTAGTCTCTCACACACAT
GACATACAGACACAGTGGGCCAGAGAAGTCAGTGGCAATGAATTCCGGGA
CACGTGAGAAGGTTGTGGGAAGCGAAAGGAGAGGAGGTTTTCGAAGCAAA
ACGGCAGACAACAACTCCTCCTACCATGGTGGTGATGGTGGATGGGGAGG
GAGGGAGGAAGGATCAAAAACAAAAAGAGGAGGTGGAGGTGGTGGCGGTA
ACATTTCTAGAGGCGGACGCAGCAGCTACAATAGGGACGGCAACGACTCC
AACGATGGCAGGGGGAGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGG
TGGAAGGAGCAGAGGAGGAGGCTATGGTTATCGAGGTGGAGAAGGTAGCC
TGGATGAGTGGGATTGTGGTGAGCAAGGTGGCCGTGGTGGTGGTAACCGT
CCACGTGGGGAAAGGGGTGGAGGGAGCAGCCATCGGGGAGGGAGGGAGTC
AGGGGGAGGAGGGCGGGGACGAGGAAGGGGTGGAGGTGGTGTTGATTTTG
GGCGTCTAATTCGAGAAGGAGGAGGAAGCGGAGATGGATTAGAAAGACGA
GGTATGACTGCTACTGCTACTGCTTTTGGTGGTCGTGGAAGGAGAGGGAG
AGGGAGGGGTGGTGGTAGCTACCGAGTAGAATGGGAGGAGGACGAGGACC
TGATGATGGATCAAGGAAAGGGAAGGCCAACAGCAACAGCAGCTGCAGTG
AAGAGG
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protein sequence of jgi.p|Nanoce1779_2|669467

>mRNA_3503-protein ID=mRNA_3503-protein|Name=jgi.p|Nanoce1779_2|669467|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MTYRHSGPEKSVAMNSGTREKVVGSERRGGFRSKTADNNSSYHGGDGGWG
GREEGSKTKRGGGGGGGNISRGGRSSYNRDGNDSNDGRGRGGGGGGEGGG
GGRSRGGGYGYRGGEGSLDEWDCGEQGGRGGGNRPRGERGGGSSHRGGRE
SGGGGRGRGRGGGGVDFGRLIREGGGSGDGLERRGMTATATAFGGRGRRG
RGRGGGSYRVEWEEDEDLMMDQGKGRPTATAAAVKR
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mRNA from alignment at scaffold_6:523954..525092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3503 ID=mRNA_3503|Name=jgi.p|Nanoce1779_2|669467|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp|location=Sequence derived from alignment at scaffold_6:523954..525092- (Nannochloropsis oceanica)
ACCCACGCACAGAGTTCTCAGTACAATAATTTGAAGCTACCATGAGGTCT
ACGTACGAATCTGTCATCAAATTATGCGTGAGGTAGTCTCTCACACACAT
GACATACAGACACAGTGGGCCAGAGAAGTCAGTGGCAATGAATTCCGGGA
CACGTGAGAAGGTTGTGGGAAGCGAAAGGAGAGGAGGTTTTCGAAGCAAA
ACGGCAGACAACAACTCCTCCTACCATGGTGGTGATGGTGGATGGGGAGG
GAGGGAGGAAGGATCAAAAACAAAAAGAGGAGGTGGAGGTGGTGGCGGTA
ACATTTCTAGAGGCGGACGCAGCAGCTACAATAGGGACGGCAACGACTCC
AACGATGGCAGGGGGAGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGG
TGGAAGGAGCAGAGGAGGAGGCTATGGTTATCGAGGTGGAGAAGGTAGCC
TGGATGAGTGGGATTGTGGTGAGCAAGGTGGCCGTGGTGGTGGTAACCGT
CCACGTGGGGAAAGGGGTGGAGGGAGGTTTGGTCGAGAGAATGCCGAGGA
CCGTCGCCATCGCGGGGAGCCTTCGTTAGCATCAGACTGGAGTCGCGGGC
AAAATGTTCGTCCGGAATCTTCCAACTCGTCCTCTTCCTCCTTCTCGTTT
GGGCACCAGCGTGGTGGTGGGGTCAGCGGATGGAAAGCGGAGAGAAACGA
GAGGATCGAGAGCAGCGGCGGTGAGGGTGGGGGTAGACGGTGGGACGATG
GTTGGGAAGAAGAGGAGGAGGAGTATAGAAGCAGGAGAAACAGTAGCAGC
AGCAGCAGCAGCAGCAGTTTTGGTTGTAATCGGCCGCTATCTTCCTTGTC
GCCTGCGAGCAGCCATCGGGGAGGGAGGGAGTCAGGGGGAGGAGGGCGGG
GACGAGGAAGGGGTGGAGGTGGTGTTGATTTTGGGCGTCTAATTCGAGAA
GGAGGAGGAAGCGGAGATGGATTAGAAAGACGAGGTATGACTGCTACTGC
TACTGCTTTTGGTGGTCGTGGAAGGAGAGGGAGAGGGAGGGGTGGTGGTA
GCTACCGAGTAGAATGGGAGGAGGACGAGGACCTGATGATGGATCAAGGA
AAGGGAAGGCCAACAGCAACAGCAGCTGCAGTGAAGAGG
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Coding sequence (CDS) from alignment at scaffold_6:523954..525092-

>mRNA_3503 ID=mRNA_3503|Name=jgi.p|Nanoce1779_2|669467|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_6:523954..525092- (Nannochloropsis oceanica)
CAGCCATCGGGGAGGGAGGGAGTCAGGGGGAGGAGGGCGGGGACGAGGAA
GGGGTGGAGGTGGTGTTGATTTTGGGCGTCTAATTCGAGAAGGAGGAGGA
AGCGGAGATGGATTAGAAAGACGAGGTATGACTGCTACTGCTACTGCTTT
TGGTGGTCGTGGAAGGAGAGGGAGAGGGAGGGGTGGTGGTAGCTACCGAG
TAGAATGGGAGGAGGACGAGGACCTGATGATGGATCAAGGAAAGGGAAGG
CCAACAGCAACAGCAGCTGCAGTGAAGAGGATGACATACAGACACAGTGG
GCCAGAGAAGTCAGTGGCAATGAATTCCGGGACACGTGAGAAGGTTGTGG
GAAGCGAAAGGAGAGGAGGTTTTCGAAGCAAAACGGCAGACAACAACTCC
TCCTACCATGGTGGTGATGGTGGATGGGGAGGGAGGGAGGAAGGATCAAA
AACAAAAAGAGGAGGTGGAGGTGGTGGCGGTAACATTTCTAGAGGCGGAC
GCAGCAGCTACAATAGGGACGGCAACGACTCCAACGATGGCAGGGGGAGA
GGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGTGGAAGGAGCAGAGGAGG
AGGCTATGGTTATCGAGGTGGAGAAGGTAGCCTGGATGAGTGGGATTGTG
GTGAGCAAGGTGGCCGTGGTGGTGGTAACCGTCCACGTGGGGAAAGGGGT
GGAGGGAGCAGCCATCGGGGAGGGAGGGAGTCAGGGGGAGGAGGGCGGGG
ACGAGGAAGGGGTGGAGGTGGTGTTGATTTTGGGCGTCTAATTCGAGAAG
GAGGAGGAAGCGGAGATGGATTAGAAAGACGAGGTATGACTGCTACTGCT
ACTGCTTTTGGTGGTCGTGGAAGGAGAGGGAGAGGGAGGGGTGGTGGTAG
CTACCGAGTAGAATGGGAGGAGGACGAGGACCTGATGATGGATCAAGGAA
AGGGAAGGCCAACAGCAACAGCAGCTGCAGTGAAGAGGATGACATACAGA
CACAGTGGGCCAGAGAAGTCAGTGGCAATGAATTCCGGGACACGTGAGAA
GGTTGTGGGAAGCGAAAGGAGAGGAGGTTTTCGAAGCAAAACGGCAGACA
ACAACTCCTCCTACCATGGTGGTGATGGTGGATGGGGAGGGAGGGAGGAA
GGATCAAAAACAAAAAGAGGAGGTGGAGGTGGTGGCGGTAACATTTCTAG
AGGCGGACGCAGCAGCTACAATAGGGACGGCAACGACTCCAACGATGGCA
GGGGGAGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGTGGAAGGAGC
AGAGGAGGAGGCTATGGTTATCGAGGTGGAGAAGGTAGCCTGGATGAGTG
GGATTGTGGTGAGCAAGGTGGCCGTGGTGGTGGTAACCGTCCACGTGGGG
AAAGGGGTGGAGGGAG
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Synonyms
Publications