jgi.p|Nanoce1779_2|363135, mRNA_3502 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|363135
Unique NamemRNA_3502
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1062
Alignment locationscaffold_6:521473..522534 -

Link to JBrowse

Properties
Property NameValue
TranscriptId363221
TrackFilteredModels2
ProteinId363135
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:521473..522534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|363135gene_3502Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|363135mRNA_3502-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3502CDS_3502Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3502 ID=mRNA_3502|Name=jgi.p|Nanoce1779_2|363135|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
GAGGGAGGGAGGGAAGGAGGGAGCACTGGGGTCGGTGTTGAGTCCCGGGG
GGGGTATGACCCTCTTAGACGGGGAGCTACTGATGCCCTTAAGGGAAGGA
GGGAGGGAAGGAGGGAGCGAGGAGGGGAAGGAAGGAGGGACATTTTTGTT
TTTGGTGTTTGACGTGATTTTCTTGGACGGGAAAGACGTGGGAGCCGAAC
CGCTGTTGGCGACGCGAATGCAGGCGTTGAGTAATGCCCTGGCTTCCATC
CCTTCCTCCTCGTCCCCTTCCTCCTCGTCCTCGTCCTCCCGGCTGGTGGT
AGGGTTTAGGCGTGGGAGCAGAGCGAAGGGGAGCAGGGTAGAAATAGTTC
CTAAAGTCTTTCACGATTTGGCAGATTTACCTGGGATGGTGGAGACGATG
ATGACCCCTGTGCAAAAGGAGAAGGGGGAGGGAAGGACGGAGGAAGAGGC
CGAGGAATTCATTTTTGACGACGGCCGGCGTCGCTCTTTTTCGGACGGGT
TGGTCTTCACGCCGTCCTCCTCCCCCTACTACCTGTATCAAGTGCATAAG
TTCAAGACCCCCGGTCGGATCAGCGTTGACTTCAAAATGAAAAAAGCGGA
CCTGTTTGCCGCCTCCCGCACCGCCGTGTCCTCCCTCCCGTCCTTGTCCT
CCCCCTCGCCCTCCTTTCTGAGGCCCCCCAAAGTGGCACCGCTTTACCTG
GTCGTGGCGAAGCATGACATGAAATTCACGACGTTGGATTTGCTGAAAAA
CAATGCCTTGAAGCGACTCATTGATCATTTTGAGGGGGGTGGGAGAGGGA
GGGAGGGAAGGAGGAGGGGCGAGAGGAGCAGCAGGGGGGGAGTGCATCGT
TGAATGTGACTTGGCCCGAGGATCGGGAGGAGGGAGGGAGGGAGGAGGGT
TATGGGTGCTGAGGGGCATCAGGGGCGATAAGGCGAGCCCCAACAGCATA
CTGACGGCGTGGCATAACCTGGAAGCGGTGGCCGAGGCCTTGACGTTGGA
GAAACTCGTGAGGGAGGTGGAACAATTGCGATTGGCACCTCCCGAAGAGG
AGGAGGACGAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|363135

>mRNA_3502-protein ID=mRNA_3502-protein|Name=jgi.p|Nanoce1779_2|363135|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MTLLDGELLMPLREGGREGGSEEGKEGGTFLFLVFDVIFLDGKDVGAEPL
LATRMQALSNALASIPSSSSPSSSSSSSRLVVGFRRGSRAKGSRVEIVPK
VFHDLADLPGMVETMMTPVQKEKGEGRTEEEAEEFIFDDGRRRSFSDGLV
FTPSSSPYYLYQVHKFKTPGRISVDFKMKKADLFAASRTAVSSLPSLSSP
SPSFLRPPKVAPLYLVVAKHDMKFTTLDLLKNNALKRLIDHFEGGGRGRE
GRRRGERSSRGGVHR*
back to top

mRNA from alignment at scaffold_6:521473..522534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3502 ID=mRNA_3502|Name=jgi.p|Nanoce1779_2|363135|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at scaffold_6:521473..522534- (Nannochloropsis oceanica)
GAGGGAGGGAGGGAAGGAGGGAGCACTGGGGTCGGTGTTGAGTCCCGGGG
GGGGTATGACCCTCTTAGACGGGGAGCTACTGATGCCCTTAAGGGAAGGA
GGGAGGGAAGGAGGGAGCGAGGAGGGGAAGGAAGGAGGGACATTTTTGTT
TTTGGTGTTTGACGTGATTTTCTTGGACGGGAAAGACGTGGGAGCCGAAC
CGCTGTTGGCGACGCGAATGCAGGCGTTGAGTAATGCCCTGGCTTCCATC
CCTTCCTCCTCGTCCCCTTCCTCCTCGTCCTCGTCCTCCCGGCTGGTGGT
AGGGTTTAGGCGTGGGAGCAGAGCGAAGGGGAGCAGGGTAGAAATAGTTC
CTAAAGTCTTTCACGATTTGGCAGATTTACCTGGGATGGTGGAGACGATG
ATGACCCCTGTGCAAAAGGAGAAGGGGGAGGGAAGGACGGAGGAAGAGGC
CGAGGAATTCATTTTTGACGACGGCCGGCGTCGCTCTTTTTCGGACGGGT
TGGTCTTCACGCCGTCCTCCTCCCCCTACTACCTGTATCAAGTGCATAAG
TTCAAGACCCCCGGTCGGATCAGCGTTGACTTCAAAATGAAAAAAGCGGA
CCTGTTTGCCGCCTCCCGCACCGCCGTGTCCTCCCTCCCGTCCTTGTCCT
CCCCCTCGCCCTCCTTTCTGAGGCCCCCCAAAGTGGCACCGCTTTACCTG
GTCGTGGCGAAGCATGACATGAAATTCACGACGTTGGATTTGCTGAAAAA
CAATGCCTTGAAGCGACTCATTGATCATTTTGAGGGGGGTGGGAGAGGGA
GGGAGGGAAGGAGGAGGGGCGAGAGGAGCAGCAGGGGGGGAGTGCATCGT
TGAATGTGACTTGGCCCGAGGATCGGGAGGAGGGAGGGAGGGAGGAGGGT
TATGGGTGCTGAGGGGCATCAGGGGCGATAAGGCGAGCCCCAACAGCATA
CTGACGGCGTGGCATAACCTGGAAGCGGTGGCCGAGGCCTTGACGTTGGA
GAAACTCGTGAGGGAGGTGGAACAATTGCGATTGGCACCTCCCGAAGAGG
AGGAGGACGAGG
back to top

Coding sequence (CDS) from alignment at scaffold_6:521473..522534-

>mRNA_3502 ID=mRNA_3502|Name=jgi.p|Nanoce1779_2|363135|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_6:521473..522534- (Nannochloropsis oceanica)
ATGACCCTCTTAGACGGGGAGCTACTGATGCCCTTAAGGGAAGGAGGGAG
GGAAGGAGGGAGCGAGGAGGGGAAGGAAGGAGGGACATTTTTGTTTTTGG
TGTTTGACGTGATTTTCTTGGACGGGAAAGACGTGGGAGCCGAACCGCTG
TTGGCGACGCGAATGCAGGCGTTGAGTAATGCCCTGGCTTCCATCCCTTC
CTCCTCGTCCCCTTCCTCCTCGTCCTCGTCCTCCCGGCTGGTGGTAGGGT
TTAGGCGTGGGAGCAGAGCGAAGGGGAGCAGGGTAGAAATAGTTCCTAAA
GTCTTTCACGATTTGGCAGATTTACCTGGGATGGTGGAGACGATGATGAC
CCCTGTGCAAAAGGAGAAGGGGGAGGGAAGGACGGAGGAAGAGGCCGAGG
AATTCATTTTTGACGACGGCCGGCGTCGCTCTTTTTCGGACGGGTTGGTC
TTCACGCCGTCCTCCTCCCCCTACTACCTGTATCAAGTGCATAAGTTCAA
GACCCCCGGTCGGATCAGCGTTGACTTCAAAATGAAAAAAGCGGACCTGT
TTGCCGCCTCCCGCACCGCCGTGTCCTCCCTCCCGTCCTTGTCCTCCCCC
TCGCCCTCCTTTCTGAGGCCCCCCAAAGTGGCACCGCTTTACCTGGTCGT
GGCGAAGCATGACATGAAATTCACGACGTTGGATTTGCTGAAAAACAATG
CCTTGAAGCGACTCATTGATCATTTTGAGGGGGGTGGGAGAGGGAGGGAG
GGAAGGAGGAGGGGCGAGAGGAGCAGCAGGGGGGGAGTGCATCGTTGA
back to top
Synonyms
Publications