jgi.p|Nanoce1779_2|582391, mRNA_3501 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582391
Unique NamemRNA_3501
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1098
Alignment locationscaffold_6:520115..521212 -

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Properties
Property NameValue
TranscriptId582477
TrackFilteredModels2
ProteinId582391
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:520115..521212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582391gene_3501Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582391mRNA_3501-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3501CDS_3501Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3501 ID=mRNA_3501|Name=jgi.p|Nanoce1779_2|582391|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp
GATGCTGCTGTTGCGGGAGGGAGGAGGGAGGGAGGAAGAGAGAAAGGACA
TGTGAGTGCGGTTTTGGATGTGGCGTGTGGGCGGGGAGGGGATTTCAAGA
AGTGGATGATGCAGGGGGTGGAGACGTATGTAGGCTTTGACTGCTCGGAA
CTGAGCGTCAAGGAATGCAGGAGCCGCGTGGAAGAGCAGCAGAGGAAGAG
CAGGAGAGGAGGGAGGGCGGGGGGACAGCCACGGGTCGGGGTAGTGTTTC
AGTGTAATATGACGGAGGAGAGGTTGGTTGAGTGCATTGAGGAGGAGATG
GGGGGGGAGGGAGTGGTGGAGGGCGGGTTTGATGTGGTGTCGATCCAGTT
TGCAGTGCATTACGCATGTGTAAGTGAGGAGGCTCTATCATCGTTGCTTG
GCAATGTGAAGAGGTTGTTGAAGGGAGGGAGGGATGGAGGACTCTTGATT
CTGACGTGTATCGATGACCGTGTCCTTCGTCAGCATCTCACGCTTCATCC
CGAAGGGGCGTTTGGGAATGCTGTCTATCGCGTCACGTTTGCACCCGAGG
TCCTACAACGGCAACAGCAGCTACAGCAGCAGCAGCAGCAGCAAAAATCA
GAGACGAAGATCCCGCCGCTGGACACGCTGGGACTCCGTTATAATTTTAC
CCTGTCTTCAGCCGTGGAGGCTTGCGATGAGTACGTAGTGCCGGTGCCCG
CATTCGAGCGCGTGGCACGTCAGGCGGGGGGGGGAGGAGGAGGGTTAAAA
TTGGTCTATCAACAGAATTTTGGGGGATTTGTGAAGGAACATTTAAAGAA
TTATGGCCGGCTATTGGAGCCGTTACAGGTGGGGGTGGTGAGTGGGGAGG
AGTGGGAGGCGATCCAGTTGTACAAGGTTATGGTGTTTCGAAAGGAATGA
GGAGGGGGAAAAAGAGGAGGGGCAAGAGGATGATTAGTGACGGGGAGGCT
CCTAGAGTCTCCTACAGGAGCCGTTGTCATGGGGTTGGTGAGAGTTTAAT
GAAGAGCGAGAGGTGATAAATTAGCGTCACCTCCAGGCGTTCCACGGGGA
TTGAGGAGGGGCGGTAGGGGGGTGGAGGGGGAGGCTCAGCATGTAAGC
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protein sequence of jgi.p|Nanoce1779_2|582391

>mRNA_3501-protein ID=mRNA_3501-protein|Name=jgi.p|Nanoce1779_2|582391|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MMQGVETYVGFDCSELSVKECRSRVEEQQRKSRRGGRAGGQPRVGVVFQC
NMTEERLVECIEEEMGGEGVVEGGFDVVSIQFAVHYACVSEEALSSLLGN
VKRLLKGGRDGGLLILTCIDDRVLRQHLTLHPEGAFGNAVYRVTFAPEVL
QRQQQLQQQQQQQKSETKIPPLDTLGLRYNFTLSSAVEACDEYVVPVPAF
ERVARQAGGGGGGLKLVYQQNFGGFVKEHLKNYGRLLEPLQVGVVSGEEW
EAIQLYKVMVFRKE*
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mRNA from alignment at scaffold_6:520115..521212-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3501 ID=mRNA_3501|Name=jgi.p|Nanoce1779_2|582391|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp|location=Sequence derived from alignment at scaffold_6:520115..521212- (Nannochloropsis oceanica)
GATGCTGCTGTTGCGGGAGGGAGGAGGGAGGGAGGAAGAGAGAAAGGACA
TGTGAGTGCGGTTTTGGATGTGGCGTGTGGGCGGGGAGGGGATTTCAAGA
AGTGGATGATGCAGGGGGTGGAGACGTATGTAGGCTTTGACTGCTCGGAA
CTGAGCGTCAAGGAATGCAGGAGCCGCGTGGAAGAGCAGCAGAGGAAGAG
CAGGAGAGGAGGGAGGGCGGGGGGACAGCCACGGGTCGGGGTAGTGTTTC
AGTGTAATATGACGGAGGAGAGGTTGGTTGAGTGCATTGAGGAGGAGATG
GGGGGGGAGGGAGTGGTGGAGGGCGGGTTTGATGTGGTGTCGATCCAGTT
TGCAGTGCATTACGCATGTGTAAGTGAGGAGGCTCTATCATCGTTGCTTG
GCAATGTGAAGAGGTTGTTGAAGGGAGGGAGGGATGGAGGACTCTTGATT
CTGACGTGTATCGATGACCGTGTCCTTCGTCAGCATCTCACGCTTCATCC
CGAAGGGGCGTTTGGGAATGCTGTCTATCGCGTCACGTTTGCACCCGAGG
TCCTACAACGGCAACAGCAGCTACAGCAGCAGCAGCAGCAGCAAAAATCA
GAGACGAAGATCCCGCCGCTGGACACGCTGGGACTCCGTTATAATTTTAC
CCTGTCTTCAGCCGTGGAGGCTTGCGATGAGTACGTAGTGCCGGTGCCCG
CATTCGAGCGCGTGGCACGTCAGGCGGGGGGGGGAGGAGGAGGGTTAAAA
TTGGTCTATCAACAGAATTTTGGGGGATTTGTGAAGGAACATTTAAAGAA
TTATGGCCGGCTATTGGAGCCGTTACAGGTGGGGGTGGTGAGTGGGGAGG
AGTGGGAGGCGATCCAGTTGTACAAGGTTATGGTGTTTCGAAAGGAATGA
GGAGGGGGAAAAAGAGGAGGGGCAAGAGGATGATTAGTGACGGGGAGGCT
CCTAGAGTCTCCTACAGGAGCCGTTGTCATGGGGTTGGTGAGAGTTTAAT
GAAGAGCGAGAGGTGATAAATTAGCGTCACCTCCAGGCGTTCCACGGGGA
TTGAGGAGGGGCGGTAGGGGGGTGGAGGGGGAGGCTCAGCATGTAAGC
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Coding sequence (CDS) from alignment at scaffold_6:520115..521212-

>mRNA_3501 ID=mRNA_3501|Name=jgi.p|Nanoce1779_2|582391|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_6:520115..521212- (Nannochloropsis oceanica)
ATGATGCAGGGGGTGGAGACGTATGTAGGCTTTGACTGCTCGGAACTGAG
CGTCAAGGAATGCAGGAGCCGCGTGGAAGAGCAGCAGAGGAAGAGCAGGA
GAGGAGGGAGGGCGGGGGGACAGCCACGGGTCGGGGTAGTGTTTCAGTGT
AATATGACGGAGGAGAGGTTGGTTGAGTGCATTGAGGAGGAGATGGGGGG
GGAGGGAGTGGTGGAGGGCGGGTTTGATGTGGTGTCGATCCAGTTTGCAG
TGCATTACGCATGTGTAAGTGAGGAGGCTCTATCATCGTTGCTTGGCAAT
GTGAAGAGGTTGTTGAAGGGAGGGAGGGATGGAGGACTCTTGATTCTGAC
GTGTATCGATGACCGTGTCCTTCGTCAGCATCTCACGCTTCATCCCGAAG
GGGCGTTTGGGAATGCTGTCTATCGCGTCACGTTTGCACCCGAGGTCCTA
CAACGGCAACAGCAGCTACAGCAGCAGCAGCAGCAGCAAAAATCAGAGAC
GAAGATCCCGCCGCTGGACACGCTGGGACTCCGTTATAATTTTACCCTGT
CTTCAGCCGTGGAGGCTTGCGATGAGTACGTAGTGCCGGTGCCCGCATTC
GAGCGCGTGGCACGTCAGGCGGGGGGGGGAGGAGGAGGGTTAAAATTGGT
CTATCAACAGAATTTTGGGGGATTTGTGAAGGAACATTTAAAGAATTATG
GCCGGCTATTGGAGCCGTTACAGGTGGGGGTGGTGAGTGGGGAGGAGTGG
GAGGCGATCCAGTTGTACAAGGTTATGGTGTTTCGAAAGGAATGA
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Synonyms
Publications