Properties
| Property Name | Value |
|---|
| TranscriptId | 663256 |
| Track | FilteredModels2 |
| ProteinId | 663170 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:518459..519988 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3500 ID=mRNA_3500|Name=jgi.p|Nanoce1779_2|663170|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp
CTCCAAGCCTGCCCACTTGAGACCCTCATCCTACCTTCGTCCCCCAGGCT
GCTCCCCTTGCCCTCCATGACAAAATCTCGCCCATGCTGCACGACTTCTG
TCGATGCACGAATCTAAAGGTGGTGTTGATGGGTGGCGGCGTAAGGGAGG
ACGTTGCAGCGCATGTAATGGTGGAACTTCGAGCGGGAGGGGATGAATTA
TTAACGTACCCTATGATGCCGTATGTACTTTAGGACTGCCGTCGAGTCGC
CCTGCTTCAGCACTTGGTCGAGACCTTCCATGCTATGTCTGCTTTTTGTT
GTGTAGTGTAGGTGCAATCAGAAGCTGTGGCCAAAGGCGTGATGATGGCG
ACGAAGGCAAGAAGGACTCCCCCTCGGAGGGCCTTCTCTGTTGTAAGTGT
TATATTATCAGCGAGGAGGCAGGCCGGCGGGCCTCCCGTGTCCCTGGCCA
TGCACAAGGGACATGATTACAGTGACCACCTCATCTACGTCTTAACAAAT
ACGACATGGTTAGTTGGTCCATTTGCGCGCTCACAAACGTTCTCTTGCTC
ACCACTGACCTCCACACCCTGGATTACAGCTCCTATCCTATCCTCCAATG
GCTCCAAACGTGGCGGCTCTTCGCGACTGCCTGGTCGACGTGCAGCAGCC
AATCCAAAAGCGTACCCACGCTGCCTTTGTTCTGCGTACCGATGGAGGCT
CCGAGGCCGTCGCCGCCATTGGTGAGGCCTTGCGGAACAAGCAAGACTCT
GCCTTGCTCCGACATGAGCTCGCATACGTCCTGGGCCAGATTCGGGACCG
GGCCGCCTGCCCTACGCTCGTGGCAGTGCTGTCGGACGAACGCGACGACT
CGATGGTGCGGCACGAGGCAGCCGAAGCACTGGGTGCGATTGCAGAGCCG
GAGTCAGTGTCGGTTCTGGAGAAATACGCCCAAGACCCTGTGCCTGAGGT
GGCCGACACATGCCGTCTGTCCCTCGACCTGATCCGATGGCACCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAACGACAACAAGAGGGATCATTGGAT
AAGAGCCCGTATTTGTCCGTGGACCCCGCTCCGGCAGACAGGCAGGATTT
GAGCACAGCGGAGCTTCAGGCCCGTTTGCTCGACCCTTCATTGCCTCTCT
TTACTCGATACCGTGCCATGTTCTCCTTGCGGAATCGGAATACGACTGAG
GCAGTGGCAGCGCTGGCGGAGGGCTTCAGGGATTCGAGCCCATTGTTTCG
GCATGAGGTTGCGTACGTGTTCGGGCAGATGCAGAACCCAGCATCAGTCC
CTGCACTGAAGTTGGTGTTGGAGAACGAGCAAGAGCATAGGATGGTGAGG
CATGAGGCGGCTGAGGCGCTGGGAGCTGTGGGGGGAGAGGAGTGTGAGAC
AATCTTGGCAAAGTTTATGCAGGATGGGGAGGTGGTGGTGAGGGAGAGTT
GTGTGGTTGCCTTGGGGATTGCGGATTACTGGGTGGGGGGAGGGGGGGAA
GGAGAGTGTGAGGGGGAGGAGGTGATGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|663170 >mRNA_3500-protein ID=mRNA_3500-protein|Name=jgi.p|Nanoce1779_2|663170|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MAPNVAALRDCLVDVQQPIQKRTHAAFVLRTDGGSEAVAAIGEALRNKQD
SALLRHELAYVLGQIRDRAACPTLVAVLSDERDDSMVRHEAAEALGAIAE
PESVSVLEKYAQDPVPEVADTCRLSLDLIRWHQQQQQQQQQQQRQQEGSL
DKSPYLSVDPAPADRQDLSTAELQARLLDPSLPLFTRYRAMFSLRNRNTT
EAVAALAEGFRDSSPLFRHEVAYVFGQMQNPASVPALKLVLENEQEHRMV
RHEAAEALGAVGGEECETILAKFMQDGEVVVRESCVVALGIADYWVGGGG
EGECEGEEVM* back to topmRNA from alignment at scaffold_6:518459..519988+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3500 ID=mRNA_3500|Name=jgi.p|Nanoce1779_2|663170|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp|location=Sequence derived from alignment at scaffold_6:518459..519988+ (Nannochloropsis oceanica)
CTCCAAGCCTGCCCACTTGAGACCCTCATCCTACCTTCGTCCCCCAGGCT
GCTCCCCTTGCCCTCCATGACAAAATCTCGCCCATGCTGCACGACTTCTG
TCGATGCACGAATCTAAAGGTGGTGTTGATGGGTGGCGGCGTAAGGGAGG
ACGTTGCAGCGCATGTAATGGTGGAACTTCGAGCGGGAGGGGATGAATTA
TTAACGTACCCTATGATGCCGTATGTACTTTAGGACTGCCGTCGAGTCGC
CCTGCTTCAGCACTTGGTCGAGACCTTCCATGCTATGTCTGCTTTTTGTT
GTGTAGTGTAGGTGCAATCAGAAGCTGTGGCCAAAGGCGTGATGATGGCG
ACGAAGGCAAGAAGGACTCCCCCTCGGAGGGCCTTCTCTGTTGTAAGTGT
TATATTATCAGCGAGGAGGCAGGCCGGCGGGCCTCCCGTGTCCCTGGCCA
TGCACAAGGGACATGATTACAGTGACCACCTCATCTACGTCTTAACAAAT
ACGACATGGTTAGTTGGTCCATTTGCGCGCTCACAAACGTTCTCTTGCTC
ACCACTGACCTCCACACCCTGGATTACAGCTCCTATCCTATCCTCCAATG
GCTCCAAACGTGGCGGCTCTTCGCGACTGCCTGGTCGACGTGCAGCAGCC
AATCCAAAAGCGTACCCACGCTGCCTTTGTTCTGCGTACCGATGGAGGCT
CCGAGGCCGTCGCCGCCATTGGTGAGGCCTTGCGGAACAAGCAAGACTCT
GCCTTGCTCCGACATGAGCTCGCATACGTCCTGGGCCAGATTCGGGACCG
GGCCGCCTGCCCTACGCTCGTGGCAGTGCTGTCGGACGAACGCGACGACT
CGATGGTGCGGCACGAGGCAGCCGAAGCACTGGGTGCGATTGCAGAGCCG
GAGTCAGTGTCGGTTCTGGAGAAATACGCCCAAGACCCTGTGCCTGAGGT
GGCCGACACATGCCGTCTGTCCCTCGACCTGATCCGATGGCACCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAACGACAACAAGAGGGATCATTGGAT
AAGAGCCCGTATTTGTCCGTGGACCCCGCTCCGGCAGACAGGCAGGATTT
GAGCACAGCGGAGCTTCAGGCCCGTTTGCTCGACCCTTCATTGCCTCTCT
TTACTCGATACCGTGCCATGTTCTCCTTGCGGAATCGGAATACGACTGAG
GCAGTGGCAGCGCTGGCGGAGGGCTTCAGGGATTCGAGCCCATTGTTTCG
GCATGAGGTTGCGTACGTGTTCGGGCAGATGCAGAACCCAGCATCAGTCC
CTGCACTGAAGTTGGTGTTGGAGAACGAGCAAGAGCATAGGATGGTGAGG
CATGAGGCGGCTGAGGCGCTGGGAGCTGTGGGGGGAGAGGAGTGTGAGAC
AATCTTGGCAAAGTTTATGCAGGATGGGGAGGTGGTGGTGAGGGAGAGTT
GTGTGGTTGCCTTGGGGATTGCGGATTACTGGGTGGGGGGAGGGGGGGAA
GGAGAGTGTGAGGGGGAGGAGGTGATGTAG back to topCoding sequence (CDS) from alignment at scaffold_6:518459..519988+ >mRNA_3500 ID=mRNA_3500|Name=jgi.p|Nanoce1779_2|663170|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at scaffold_6:518459..519988+ (Nannochloropsis oceanica)
ATGGCTCCAAACGTGGCGGCTCTTCGCGACTGCCTGGTCGACGTGCAGCA
GCCAATCCAAAAGCGTACCCACGCTGCCTTTGTTCTGCGTACCGATGGAG
GCTCCGAGGCCGTCGCCGCCATTGGTGAGGCCTTGCGGAACAAGCAAGAC
TCTGCCTTGCTCCGACATGAGCTCGCATACGTCCTGGGCCAGATTCGGGA
CCGGGCCGCCTGCCCTACGCTCGTGGCAGTGCTGTCGGACGAACGCGACG
ACTCGATGGTGCGGCACGAGGCAGCCGAAGCACTGGGTGCGATTGCAGAG
CCGGAGTCAGTGTCGGTTCTGGAGAAATACGCCCAAGACCCTGTGCCTGA
GGTGGCCGACACATGCCGTCTGTCCCTCGACCTGATCCGATGGCACCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACGACAACAAGAGGGATCATTG
GATAAGAGCCCGTATTTGTCCGTGGACCCCGCTCCGGCAGACAGGCAGGA
TTTGAGCACAGCGGAGCTTCAGGCCCGTTTGCTCGACCCTTCATTGCCTC
TCTTTACTCGATACCGTGCCATGTTCTCCTTGCGGAATCGGAATACGACT
GAGGCAGTGGCAGCGCTGGCGGAGGGCTTCAGGGATTCGAGCCCATTGTT
TCGGCATGAGGTTGCGTACGTGTTCGGGCAGATGCAGAACCCAGCATCAG
TCCCTGCACTGAAGTTGGTGTTGGAGAACGAGCAAGAGCATAGGATGGTG
AGGCATGAGGCGGCTGAGGCGCTGGGAGCTGTGGGGGGAGAGGAGTGTGA
GACAATCTTGGCAAAGTTTATGCAGGATGGGGAGGTGGTGGTGAGGGAGA
GTTGTGTGGTTGCCTTGGGGATTGCGGATTACTGGGTGGGGGGAGGGGGG
GAAGGAGAGTGTGAGGGGGAGGAGGTGATGTAG back to top
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