jgi.p|Nanoce1779_2|575983, mRNA_35 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575983
Unique NamemRNA_35
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length626
Alignment locationscaffold_3:105099..105724 +

Link to JBrowse

Properties
Property NameValue
TranscriptId576069
TrackFilteredModels2
ProteinId575983
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:105099..105724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575983gene_35Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575983mRNA_35-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_35CDS_35Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_35 ID=mRNA_35|Name=jgi.p|Nanoce1779_2|575983|organism=Nannochloropsis oceanica|type=mRNA|length=626bp
CAGCAGCAGCAGCAGCAGCAGCAGAAATAGTATACGCCGCCTCAGGCTTA
AGTGGCACACGCCTCCCTCCAATCTTGAATACCGCAGCATCTTCCCTCTC
TTCCTCGAGGGCCTGCGGGAGAACAGAGATCCCTACCGTTTTCTGGCCGT
GCAAGGCGTACTCGACTTGATGGAGGCCTGCCCTCACAAACTCTTCGCTT
GTATCCCTTTCCTCCTTTCCCCCCTCAAGCGCGCCCTGGATACGCACCAA
CCTATCATTCTCGCCACGACCCTAAAAATTTTCCAAGATTTCATTTTAAC
GGACCCAGAGAGGATCGGCCCGGCCCTCGTCCCTTTCTATCACCACTTCC
TGGGGGCCTCTGCCGTGTTCAACAAATACAAGATACATACCCGGAGCAGA
AACCAAAGGGGTGAAATGGACTGGGGGCAACGACGACGGCTGTGTGTGTC
GGAGCTGGTGAACGAGACGTTGGAGTTGCTGGAAATCACGGGGGGCAGGG
AGGCGTTTGAGCATATCCGGTACATGATACCTAGCTACGAGTCGGTCATG
CAGTAGTGAGGGAGGGAGAGAGGGAGGGTTGGATAGATAGATGGACAGAG
GATGGGAGACTTGCGTGTGAAGTGGT
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protein sequence of jgi.p|Nanoce1779_2|575983

>mRNA_35-protein ID=mRNA_35-protein|Name=jgi.p|Nanoce1779_2|575983|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MEACPHKLFACIPFLLSPLKRALDTHQPIILATTLKIFQDFILTDPERIG
PALVPFYHHFLGASAVFNKYKIHTRSRNQRGEMDWGQRRRLCVSELVNET
LELLEITGGREAFEHIRYMIPSYESVMQ*
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mRNA from alignment at scaffold_3:105099..105724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_35 ID=mRNA_35|Name=jgi.p|Nanoce1779_2|575983|organism=Nannochloropsis oceanica|type=mRNA|length=626bp|location=Sequence derived from alignment at scaffold_3:105099..105724+ (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCAGAAATAGTATACGCCGCCTCAGGCTTA
AGTGGCACACGCCTCCCTCCAATCTTGAATACCGCAGCATCTTCCCTCTC
TTCCTCGAGGGCCTGCGGGAGAACAGAGATCCCTACCGTTTTCTGGCCGT
GCAAGGCGTACTCGACTTGATGGAGGCCTGCCCTCACAAACTCTTCGCTT
GTATCCCTTTCCTCCTTTCCCCCCTCAAGCGCGCCCTGGATACGCACCAA
CCTATCATTCTCGCCACGACCCTAAAAATTTTCCAAGATTTCATTTTAAC
GGACCCAGAGAGGATCGGCCCGGCCCTCGTCCCTTTCTATCACCACTTCC
TGGGGGCCTCTGCCGTGTTCAACAAATACAAGATACATACCCGGAGCAGA
AACCAAAGGGGTGAAATGGACTGGGGGCAACGACGACGGCTGTGTGTGTC
GGAGCTGGTGAACGAGACGTTGGAGTTGCTGGAAATCACGGGGGGCAGGG
AGGCGTTTGAGCATATCCGGTACATGATACCTAGCTACGAGTCGGTCATG
CAGTAGTGAGGGAGGGAGAGAGGGAGGGTTGGATAGATAGATGGACAGAG
GATGGGAGACTTGCGTGTGAAGTGGT
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Coding sequence (CDS) from alignment at scaffold_3:105099..105724+

>mRNA_35 ID=mRNA_35|Name=jgi.p|Nanoce1779_2|575983|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_3:105099..105724+ (Nannochloropsis oceanica)
ATGGAGGCCTGCCCTCACAAACTCTTCGCTTGTATCCCTTTCCTCCTTTC
CCCCCTCAAGCGCGCCCTGGATACGCACCAACCTATCATTCTCGCCACGA
CCCTAAAAATTTTCCAAGATTTCATTTTAACGGACCCAGAGAGGATCGGC
CCGGCCCTCGTCCCTTTCTATCACCACTTCCTGGGGGCCTCTGCCGTGTT
CAACAAATACAAGATACATACCCGGAGCAGAAACCAAAGGGGTGAAATGG
ACTGGGGGCAACGACGACGGCTGTGTGTGTCGGAGCTGGTGAACGAGACG
TTGGAGTTGCTGGAAATCACGGGGGGCAGGGAGGCGTTTGAGCATATCCG
GTACATGATACCTAGCTACGAGTCGGTCATGCAGTAG
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Synonyms
Publications