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Properties
Property Name | Value |
TranscriptId | 582463 |
Track | FilteredModels2 |
ProteinId | 582377 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_6 | supercontig | scaffold_6:513322..516583 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3498 ID=mRNA_3498|Name=jgi.p|Nanoce1779_2|582377|organism=Nannochloropsis oceanica|type=mRNA|length=3262bp ACAGTGCTAAGCCTGCAACGAGTACATTACGAGCACCAGGGGCTGGCCCG GGAAGACGTCTTCCGGGCTTCGCCCTACCCAGCGTCAACCGAGGGGTTGC CCAGTTTGTCTGCCGCCTCTCATCTAGCCTCCCGGCTACCACCCACGCTC CACAATGCCGGGCACCAAGTCAGCGGACCCCACGCGATGGAATATCTACA AATTTGGAGGCACTAGCGTAGCTAGCGCAGAATGTTACCGGACGGTGCGA AATATTATACTGGCGGCCCAACAAAGCACGCCCAAGATGGCAGTGGTAGT GTCCGCTATGGGTGGCAAGCCCAAAATTACAGACCTACTCATCAACACTG TTATGCTAGCCTCCAAGGGCGACTTAGAGGGATACGAGGAGACTTTGAGC GTGGTTCGGAAGAAGCATGTGGCCTGCGCAATGGAGCTTTTCTCTGCGGC AGGCGCGCAGGCGTACGAGGAAGAACTAGACGAGGACATAGATAATTTAC GCGACATTTTGCGGGCCGTCTCTCTCATGCGCTACAGCGGGGAAAAGATT GTCGAGCTCGTGTCAGGGCACGGGGAGATATGGTCAGCACGTATGCTAAC GAGGCTATTTAAGGATGGAGGGCACGATTTTATTTTCGTCGACGCTCGCA AGGTCTTGTTTGTGGATGAATCGGGAGAGAGCGGCCCCGAGATTATGTGG GAAAGATCAAAAGCAGCAACGCAGGCTTTCATGGCGGCAGCACCGACAGC ATGCCCTGTGATAACGGGATTTATTGCTTCCACTGCTGATGGAGTCGTGA CGACATTGAAGCGGGATGGGAGTGATTATTCCGCGAGTATTTTTGGGCGT CTGTTTGAGGTGACGGGGATCACGATTTGGACCGACGTGGACGGTGTCTT GTCCGCAGACCCCAGGCGGGTGCCTGAAGCCAAGGTCTTAGCGGATGTGT CATATAGTGAGGCGATGGAACTCGCGTATTTTGGGGCGAAAGTCATTCAT CCCAAGACCATGACCCCAGCCGTGGCTGCTTCCATTCCTATTTTTATCCG CAACACATTTAATCCAAGTTTTCCGGGGACGCGTATTTTTGTTTCTTCCG CTTCCACTATCGATCGGGACAAGTGTGTGTGTGGCTTTTCGACGGTGGAT AACATGGCCCTGTTGAACTTGGAGGGTTCGGGCATGATTGGGGTTCCGGG TATAGCCAATCGCTTGTTTGGTGCCATCCAGCAGACCGGGATCTCGGTCT CCATGATCGCTCAAGCCTCGTCGGAGTACTCCATCTCTTTCGCCACCCGA GACATTGATGCCGACGCAGCCGCTAAGGCTGTCACGGACGAGTTCTTCCG TGAATTCAAAAGTCATTTGATAAACAAAGTCGACATCATCAGGCCCTGCT CTATTATTGCCGCGGTGGGCGACGGCATGAGTAACACGAAAGGCGCTGCG GGTAAGTTTTTCAAGGCTCTGGGGAATGCAGGAGTGAACGTGCTTGCCAT TTCTCAAGGGTCAAGTGAAAGAATTATCTCCGCTGTGGTAAAGGGCTCGG ATTCGACCAAGTCTCTGAGGGCAGTGCACTCGGCTTTCCTCTTGTCCAAT CATCTGATTTCTGTGGGCCTGGTGGGACGAGGGAAAGTGGCAAAGGCGAT GGTTGAAGTGATCCGAGCTCAAGCTGACATGCTTTACGGTCGGTTTGGGA CGGAGTTTCACTTGCGGGCCGTGATGGATTCGACTGGGATGTTGCTGAGT AGCTCGGGACCGACTTTGGGTTTGGAGGGGTTGGATGCTGCGTTCGAGGC GCATAAAGTACCGGGAGATATTAAGGCTTTTACTAAGCATGTACGGGCGG ACCATCTGCCCCATGCGATCATCATTGATTGTTCAGATGCGGAGGAGGTG GCGATGGAGCATCCCGGCTGGTTGGAACAAAATATTCATGTTGTGACAGC GAATAAGAAGGGATTGTGTGGATCCATGTCTTTGTACAATGCCATTTTAA GGCAACGCAAGGTGAAGCAGCATAACTATATGTATGAGGTCACTGTCGGA GGTGGATTGAAGATTATCACGAGCTTGCAAGCGATGCTTATTGGGGGAGA TCGGATTCTAAGGCTGGAAGGAGCGTTGTCTGCGTCGATGAATTATGTAT TGGGGCTAGTGTCGCCCGTACCGGCGTGTAAAGTTGCGCATTTGGGAATG AATGGAAGTAGCAGTAGTAATAGCTTGAGCAATGGCCATGGGCATACAGA GTGTGAACGAGCGCCATCGTCTTTGTCGGAAGCAGTGGCAGAGGCGGCAA GGTTGGATATTCTGGAGAGGAACCCGCTAAATGATCTGAATGGGGTGGAA ATGGCCCAGAAACTTCTGGTGTTGGCGCGGGAAATGGGATTGCCTCTACG GCTAGACGACGTCGAAATCGAGACCTTGGTACCGAAAAACACCCCTCTCG CGGAACTTGAGCAATACAATGATCAGGTTGCTGCGCGTGTGGCGGCCGCG ACGGCCCGTGGAGCAGTGTTGCGGTACGTGGGGAGTATTGACGAGGAGGG CAAGGCAGAGATTGGTATTCAAGAAGTGCCGTTTGAGCATCCGTTTGCAA CAGTCCGGGGGGCAGGATACTGTTTTCGTATTTTTTCGGCTTTCCACAGC CCGGATCCGATCACAATTCAGGGAACCATTGGCTTGCCTAAGGCGACGGC GGCAGGATTGTTTTCAGACTTGCTGTTTGTGGCTCAACGGTTGGGAGCGA AGGATAAGGGACATACATTACAGGGGACAGGCATTTTGAGTGATTCAGTC ATTGAGGCTTAGGCGAGTGATGGGTGTATCGTGCACGTTATGTGTGGAAG GAGGGAGAAGATAGAAAGTGGAGAGGCTGAAAGGGAAGGAGGGCCTCTCG CTTGCTGAGAGATAGGAAAAGGAACTGAGTTGAGTGGAAAGCCGAGGCAT GAAAAAACCGATTGCACAAAAGAAGTTAATCAAGTAATTATGACCGAAAA TGTGACGGTAGGAAAAGAGTATTGCTACGAGCTGATGCTTTCATCATTGC CAAAGTAAGTATGTCTCCCATCGAACAAAACAGAAATAAAATTTTCGACC GACGGTATAAAATACTCCTTGCTTGCTCGGTCTAAGCACCAGAGAGCACT TTTCACTGGGCGAAACAACCTATTCAAAAGTTAAATTACAAACGCAAAGA TTATCTCTAATTTCCCCTCATGTATGATGGACGTTCGGGGCATTCCTCCG ATTCTCCGTCTT back to topprotein sequence of jgi.p|Nanoce1779_2|582377 >mRNA_3498-protein ID=mRNA_3498-protein|Name=jgi.p|Nanoce1779_2|582377|organism=Nannochloropsis oceanica|type=polypeptide|length=886bp MPGTKSADPTRWNIYKFGGTSVASAECYRTVRNIILAAQQSTPKMAVVVS AMGGKPKITDLLINTVMLASKGDLEGYEETLSVVRKKHVACAMELFSAAG AQAYEEELDEDIDNLRDILRAVSLMRYSGEKIVELVSGHGEIWSARMLTR LFKDGGHDFIFVDARKVLFVDESGESGPEIMWERSKAATQAFMAAAPTAC PVITGFIASTADGVVTTLKRDGSDYSASIFGRLFEVTGITIWTDVDGVLS ADPRRVPEAKVLADVSYSEAMELAYFGAKVIHPKTMTPAVAASIPIFIRN TFNPSFPGTRIFVSSASTIDRDKCVCGFSTVDNMALLNLEGSGMIGVPGI ANRLFGAIQQTGISVSMIAQASSEYSISFATRDIDADAAAKAVTDEFFRE FKSHLINKVDIIRPCSIIAAVGDGMSNTKGAAGKFFKALGNAGVNVLAIS QGSSERIISAVVKGSDSTKSLRAVHSAFLLSNHLISVGLVGRGKVAKAMV EVIRAQADMLYGRFGTEFHLRAVMDSTGMLLSSSGPTLGLEGLDAAFEAH KVPGDIKAFTKHVRADHLPHAIIIDCSDAEEVAMEHPGWLEQNIHVVTAN KKGLCGSMSLYNAILRQRKVKQHNYMYEVTVGGGLKIITSLQAMLIGGDR ILRLEGALSASMNYVLGLVSPVPACKVAHLGMNGSSSSNSLSNGHGHTEC ERAPSSLSEAVAEAARLDILERNPLNDLNGVEMAQKLLVLAREMGLPLRL DDVEIETLVPKNTPLAELEQYNDQVAARVAAATARGAVLRYVGSIDEEGK AEIGIQEVPFEHPFATVRGAGYCFRIFSAFHSPDPITIQGTIGLPKATAA GLFSDLLFVAQRLGAKDKGHTLQGTGILSDSVIEA* back to topmRNA from alignment at scaffold_6:513322..516583- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3498 ID=mRNA_3498|Name=jgi.p|Nanoce1779_2|582377|organism=Nannochloropsis oceanica|type=mRNA|length=3262bp|location=Sequence derived from alignment at scaffold_6:513322..516583- (Nannochloropsis oceanica) ACAGTGCTAAGCCTGCAACGAGTACATTACGAGCACCAGGGGCTGGCCCG
GGAAGACGTCTTCCGGGCTTCGCCCTACCCAGCGTCAACCGAGGGGTTGC
CCAGTTTGTCTGCCGCCTCTCATCTAGCCTCCCGGCTACCACCCACGCTC
CACAATGCCGGGCACCAAGTCAGCGGACCCCACGCGATGGAATATCTACA
AATTTGGAGGCACTAGCGTAGCTAGCGCAGAATGTTACCGGACGGTGCGA
AATATTATACTGGCGGCCCAACAAAGCACGCCCAAGATGGCAGTGGTAGT
GTCCGCTATGGGTGGCAAGCCCAAAATTACAGACCTACTCATCAACACTG
TTATGCTAGCCTCCAAGGGCGACTTAGAGGGATACGAGGAGACTTTGAGC
GTGGTTCGGAAGAAGCATGTGGCCTGCGCAATGGAGCTTTTCTCTGCGGC
AGGCGCGCAGGCGTACGAGGAAGAACTAGACGAGGACATAGATAATTTAC
GCGACATTTTGCGGGCCGTCTCTCTCATGCGCTACAGCGGGGAAAAGATT
GTCGAGCTCGTGTCAGGGCACGGGGAGATATGGTCAGCACGTATGCTAAC
GAGGCTATTTAAGGATGGAGGGCACGATTTTATTTTCGTCGACGCTCGCA
AGGTCTTGTTTGTGGATGAATCGGGAGAGAGCGGCCCCGAGATTATGTGG
GAAAGATCAAAAGCAGCAACGCAGGCTTTCATGGCGGCAGCACCGACAGC
ATGCCCTGTGATAACGGGATTTATTGCTTCCACTGCTGATGGAGTCGTGA
CGACATTGAAGCGGGATGGGAGTGATTATTCCGCGAGTATTTTTGGGCGT
CTGTTTGAGGTGACGGGGATCACGATTTGGACCGACGTGGACGGTGTCTT
GTCCGCAGACCCCAGGCGGGTGCCTGAAGCCAAGGTCTTAGCGGATGTGT
CATATAGTGAGGCGATGGAACTCGCGTATTTTGGGGCGAAAGTCATTCAT
CCCAAGACCATGACCCCAGCCGTGGCTGCTTCCATTCCTATTTTTATCCG
CAACACATTTAATCCAAGTTTTCCGGGGACGCGTATTTTTGTTTCTTCCG
CTTCCACTATCGATCGGGACAAGTGTGTGTGTGGCTTTTCGACGGTGGAT
AACATGGCCCTGTTGAACTTGGAGGGTTCGGGCATGATTGGGGTTCCGGG
TATAGCCAATCGCTTGTTTGGTGCCATCCAGCAGACCGGGATCTCGGTCT
CCATGATCGCTCAAGCCTCGTCGGAGTACTCCATCTCTTTCGCCACCCGA
GACATTGATGCCGACGCAGCCGCTAAGGCTGTCACGGACGAGTTCTTCCG
TGAATTCAAAAGTCATTTGATAAACAAAGTCGACATCATCAGGCCCTGCT
CTATTATTGCCGCGGTGGGCGACGGCATGAGTAACACGAAAGGCGCTGCG
GGTAAGTTTTTCAAGGCTCTGGGGAATGCAGGAGTGAACGTGCTTGCCAT
TTCTCAAGGGTCAAGTGAAAGAATTATCTCCGCTGTGGTAAAGGGCTCGG
ATTCGACCAAGTCTCTGAGGGCAGTGCACTCGGCTTTCCTCTTGTCCAAT
CATCTGATTTCTGTGGGCCTGGTGGGACGAGGGAAAGTGGCAAAGGCGAT
GGTTGAAGTGATCCGAGCTCAAGCTGACATGCTTTACGGTCGGTTTGGGA
CGGAGTTTCACTTGCGGGCCGTGATGGATTCGACTGGGATGTTGCTGAGT
AGCTCGGGACCGACTTTGGGTTTGGAGGGGTTGGATGCTGCGTTCGAGGC
GCATAAAGTACCGGGAGATATTAAGGCTTTTACTAAGCATGTACGGGCGG
ACCATCTGCCCCATGCGATCATCATTGATTGTTCAGATGCGGAGGAGGTG
GCGATGGAGCATCCCGGCTGGTTGGAACAAAATATTCATGTTGTGACAGC
GAATAAGAAGGGATTGTGTGGATCCATGTCTTTGTACAATGCCATTTTAA
GGCAACGCAAGGTGAAGCAGCATAACTATATGTATGAGGTCACTGTCGGA
GGTGGATTGAAGATTATCACGAGCTTGCAAGCGATGCTTATTGGGGGAGA
TCGGATTCTAAGGCTGGAAGGAGCGTTGTCTGCGTCGATGAATTATGTAT
TGGGGCTAGTGTCGCCCGTACCGGCGTGTAAAGTTGCGCATTTGGGAATG
AATGGAAGTAGCAGTAGTAATAGCTTGAGCAATGGCCATGGGCATACAGA
GTGTGAACGAGCGCCATCGTCTTTGTCGGAAGCAGTGGCAGAGGCGGCAA
GGTTGGATATTCTGGAGAGGAACCCGCTAAATGATCTGAATGGGGTGGAA
ATGGCCCAGAAACTTCTGGTGTTGGCGCGGGAAATGGGATTGCCTCTACG
GCTAGACGACGTCGAAATCGAGACCTTGGTACCGAAAAACACCCCTCTCG
CGGAACTTGAGCAATACAATGATCAGGTTGCTGCGCGTGTGGCGGCCGCG
ACGGCCCGTGGAGCAGTGTTGCGGTACGTGGGGAGTATTGACGAGGAGGG
CAAGGCAGAGATTGGTATTCAAGAAGTGCCGTTTGAGCATCCGTTTGCAA
CAGTCCGGGGGGCAGGATACTGTTTTCGTATTTTTTCGGCTTTCCACAGC
CCGGATCCGATCACAATTCAGGGAACCATTGGCTTGCCTAAGGCGACGGC
GGCAGGATTGTTTTCAGACTTGCTGTTTGTGGCTCAACGGTTGGGAGCGA
AGGATAAGGGACATACATTACAGGGGACAGGCATTTTGAGTGATTCAGTC
ATTGAGGCTTAGGCGAGTGATGGGTGTATCGTGCACGTTATGTGTGGAAG
GAGGGAGAAGATAGAAAGTGGAGAGGCTGAAAGGGAAGGAGGGCCTCTCG
CTTGCTGAGAGATAGGAAAAGGAACTGAGTTGAGTGGAAAGCCGAGGCAT
GAAAAAACCGATTGCACAAAAGAAGTTAATCAAGTAATTATGACCGAAAA
TGTGACGGTAGGAAAAGAGTATTGCTACGAGCTGATGCTTTCATCATTGC
CAAAGTAAGTATGTCTCCCATCGAACAAAACAGAAATAAAATTTTCGACC
GACGGTATAAAATACTCCTTGCTTGCTCGGTCTAAGCACCAGAGAGCACT
TTTCACTGGGCGAAACAACCTATTCAAAAGTTAAATTACAAACGCAAAGA
TTATCTCTAATTTCCCCTCATGTATGATGGACGTTCGGGGCATTCCTCCG
ATTCTCCGTCTT back to topCoding sequence (CDS) from alignment at scaffold_6:513322..516583- >mRNA_3498 ID=mRNA_3498|Name=jgi.p|Nanoce1779_2|582377|organism=Nannochloropsis oceanica|type=CDS|length=2658bp|location=Sequence derived from alignment at scaffold_6:513322..516583- (Nannochloropsis oceanica) ATGCCGGGCACCAAGTCAGCGGACCCCACGCGATGGAATATCTACAAATT TGGAGGCACTAGCGTAGCTAGCGCAGAATGTTACCGGACGGTGCGAAATA TTATACTGGCGGCCCAACAAAGCACGCCCAAGATGGCAGTGGTAGTGTCC GCTATGGGTGGCAAGCCCAAAATTACAGACCTACTCATCAACACTGTTAT GCTAGCCTCCAAGGGCGACTTAGAGGGATACGAGGAGACTTTGAGCGTGG TTCGGAAGAAGCATGTGGCCTGCGCAATGGAGCTTTTCTCTGCGGCAGGC GCGCAGGCGTACGAGGAAGAACTAGACGAGGACATAGATAATTTACGCGA CATTTTGCGGGCCGTCTCTCTCATGCGCTACAGCGGGGAAAAGATTGTCG AGCTCGTGTCAGGGCACGGGGAGATATGGTCAGCACGTATGCTAACGAGG CTATTTAAGGATGGAGGGCACGATTTTATTTTCGTCGACGCTCGCAAGGT CTTGTTTGTGGATGAATCGGGAGAGAGCGGCCCCGAGATTATGTGGGAAA GATCAAAAGCAGCAACGCAGGCTTTCATGGCGGCAGCACCGACAGCATGC CCTGTGATAACGGGATTTATTGCTTCCACTGCTGATGGAGTCGTGACGAC ATTGAAGCGGGATGGGAGTGATTATTCCGCGAGTATTTTTGGGCGTCTGT TTGAGGTGACGGGGATCACGATTTGGACCGACGTGGACGGTGTCTTGTCC GCAGACCCCAGGCGGGTGCCTGAAGCCAAGGTCTTAGCGGATGTGTCATA TAGTGAGGCGATGGAACTCGCGTATTTTGGGGCGAAAGTCATTCATCCCA AGACCATGACCCCAGCCGTGGCTGCTTCCATTCCTATTTTTATCCGCAAC ACATTTAATCCAAGTTTTCCGGGGACGCGTATTTTTGTTTCTTCCGCTTC CACTATCGATCGGGACAAGTGTGTGTGTGGCTTTTCGACGGTGGATAACA TGGCCCTGTTGAACTTGGAGGGTTCGGGCATGATTGGGGTTCCGGGTATA GCCAATCGCTTGTTTGGTGCCATCCAGCAGACCGGGATCTCGGTCTCCAT GATCGCTCAAGCCTCGTCGGAGTACTCCATCTCTTTCGCCACCCGAGACA TTGATGCCGACGCAGCCGCTAAGGCTGTCACGGACGAGTTCTTCCGTGAA TTCAAAAGTCATTTGATAAACAAAGTCGACATCATCAGGCCCTGCTCTAT TATTGCCGCGGTGGGCGACGGCATGAGTAACACGAAAGGCGCTGCGGGTA AGTTTTTCAAGGCTCTGGGGAATGCAGGAGTGAACGTGCTTGCCATTTCT CAAGGGTCAAGTGAAAGAATTATCTCCGCTGTGGTAAAGGGCTCGGATTC GACCAAGTCTCTGAGGGCAGTGCACTCGGCTTTCCTCTTGTCCAATCATC TGATTTCTGTGGGCCTGGTGGGACGAGGGAAAGTGGCAAAGGCGATGGTT GAAGTGATCCGAGCTCAAGCTGACATGCTTTACGGTCGGTTTGGGACGGA GTTTCACTTGCGGGCCGTGATGGATTCGACTGGGATGTTGCTGAGTAGCT CGGGACCGACTTTGGGTTTGGAGGGGTTGGATGCTGCGTTCGAGGCGCAT AAAGTACCGGGAGATATTAAGGCTTTTACTAAGCATGTACGGGCGGACCA TCTGCCCCATGCGATCATCATTGATTGTTCAGATGCGGAGGAGGTGGCGA TGGAGCATCCCGGCTGGTTGGAACAAAATATTCATGTTGTGACAGCGAAT AAGAAGGGATTGTGTGGATCCATGTCTTTGTACAATGCCATTTTAAGGCA ACGCAAGGTGAAGCAGCATAACTATATGTATGAGGTCACTGTCGGAGGTG GATTGAAGATTATCACGAGCTTGCAAGCGATGCTTATTGGGGGAGATCGG ATTCTAAGGCTGGAAGGAGCGTTGTCTGCGTCGATGAATTATGTATTGGG GCTAGTGTCGCCCGTACCGGCGTGTAAAGTTGCGCATTTGGGAATGAATG GAAGTAGCAGTAGTAATAGCTTGAGCAATGGCCATGGGCATACAGAGTGT GAACGAGCGCCATCGTCTTTGTCGGAAGCAGTGGCAGAGGCGGCAAGGTT GGATATTCTGGAGAGGAACCCGCTAAATGATCTGAATGGGGTGGAAATGG CCCAGAAACTTCTGGTGTTGGCGCGGGAAATGGGATTGCCTCTACGGCTA GACGACGTCGAAATCGAGACCTTGGTACCGAAAAACACCCCTCTCGCGGA ACTTGAGCAATACAATGATCAGGTTGCTGCGCGTGTGGCGGCCGCGACGG CCCGTGGAGCAGTGTTGCGGTACGTGGGGAGTATTGACGAGGAGGGCAAG GCAGAGATTGGTATTCAAGAAGTGCCGTTTGAGCATCCGTTTGCAACAGT CCGGGGGGCAGGATACTGTTTTCGTATTTTTTCGGCTTTCCACAGCCCGG ATCCGATCACAATTCAGGGAACCATTGGCTTGCCTAAGGCGACGGCGGCA GGATTGTTTTCAGACTTGCTGTTTGTGGCTCAACGGTTGGGAGCGAAGGA TAAGGGACATACATTACAGGGGACAGGCATTTTGAGTGATTCAGTCATTG AGGCTTAG back to top
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