jgi.p|Nanoce1779_2|582374, mRNA_3497 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582374
Unique NamemRNA_3497
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length733
Alignment locationscaffold_6:512575..513307 +

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Properties
Property NameValue
TranscriptId582460
TrackFilteredModels2
ProteinId582374
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:512575..513307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582374gene_3497Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582374mRNA_3497-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3497CDS_3497Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3497 ID=mRNA_3497|Name=jgi.p|Nanoce1779_2|582374|organism=Nannochloropsis oceanica|type=mRNA|length=733bp
CGTCTGAATCGCCGATCCGCTGATCCTCTCCCTTGACTTGCTAATCCAAA
TAAATCCACCCCTGTCACACGTACAGATTACGATTACAACGATGAAGGTT
TTGCTTGGTATCCTATTTGTGAGCACGGCTGCTGTCCAGGCCTTCCAGCC
TCCATCGTTCTTCCTTGCACGTGCCCGCACTCGGGACGCTTCAATGACCA
TGCGGCGGGTTACCCCCCATGGCGCTGACACATCTGACCGCCGCAGTTTG
ATCCAGAACCAGATATTTCTGCTTGGTGGTAGTGCTGCTATAATGAGCTA
TTTGCCCTCGGCTGTCAAAGCGGATTCCACGGGCAAATATAGCACGAAAC
AAACGGCCAAGAAGCGCTACTTGCCTCGCGTGCGCAGAGGCGTGGCTCTG
TTCGCCGCCTTGGGCAAGACGCTGGACAAGCCCGAGACAATTCAAGCTTT
CTGTATGTACGTAGACGACAACATGGGTACTGCCATGGCATTGTACGGTT
CCTCCACGCGCATCGGTGAGTTGCCTGACCCCAAGTCCCGCACGGTCGAT
AAGGAGGTGGAAGACTTTGTGAAGGAAATCAAGGCGCTTGCCAAGGGCGG
GGATGTCAATGCAACATACGAGCGTGCCAAGGCTAGCCTTATTGCTTATC
TGGCTGGTACCAAGCTGGAGCCGTTGGGGGACGTGGCATATAATACAACC
TCTCTATGATCGAGGGTAGAAGGGGGATGGAGG
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protein sequence of jgi.p|Nanoce1779_2|582374

>mRNA_3497-protein ID=mRNA_3497-protein|Name=jgi.p|Nanoce1779_2|582374|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MKVLLGILFVSTAAVQAFQPPSFFLARARTRDASMTMRRVTPHGADTSDR
RSLIQNQIFLLGGSAAIMSYLPSAVKADSTGKYSTKQTAKKRYLPRVRRG
VALFAALGKTLDKPETIQAFCMYVDDNMGTAMALYGSSTRIGELPDPKSR
TVDKEVEDFVKEIKALAKGGDVNATYERAKASLIAYLAGTKLEPLGDVAY
NTTSL*
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mRNA from alignment at scaffold_6:512575..513307+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3497 ID=mRNA_3497|Name=jgi.p|Nanoce1779_2|582374|organism=Nannochloropsis oceanica|type=mRNA|length=733bp|location=Sequence derived from alignment at scaffold_6:512575..513307+ (Nannochloropsis oceanica)
CGTCTGAATCGCCGATCCGCTGATCCTCTCCCTTGACTTGCTAATCCAAA
TAAATCCACCCCTGTCACACGTACAGATTACGATTACAACGATGAAGGTT
TTGCTTGGTATCCTATTTGTGAGCACGGCTGCTGTCCAGGCCTTCCAGCC
TCCATCGTTCTTCCTTGCACGTGCCCGCACTCGGGACGCTTCAATGACCA
TGCGGCGGGTTACCCCCCATGGCGCTGACACATCTGACCGCCGCAGTTTG
ATCCAGAACCAGATATTTCTGCTTGGTGGTAGTGCTGCTATAATGAGCTA
TTTGCCCTCGGCTGTCAAAGCGGATTCCACGGGCAAATATAGCACGAAAC
AAACGGCCAAGAAGCGCTACTTGCCTCGCGTGCGCAGAGGCGTGGCTCTG
TTCGCCGCCTTGGGCAAGACGCTGGACAAGCCCGAGACAATTCAAGCTTT
CTGTATGTACGTAGACGACAACATGGGTACTGCCATGGCATTGTACGGTT
CCTCCACGCGCATCGGTGAGTTGCCTGACCCCAAGTCCCGCACGGTCGAT
AAGGAGGTGGAAGACTTTGTGAAGGAAATCAAGGCGCTTGCCAAGGGCGG
GGATGTCAATGCAACATACGAGCGTGCCAAGGCTAGCCTTATTGCTTATC
TGGCTGGTACCAAGCTGGAGCCGTTGGGGGACGTGGCATATAATACAACC
TCTCTATGATCGAGGGTAGAAGGGGGATGGAGG
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Coding sequence (CDS) from alignment at scaffold_6:512575..513307+

>mRNA_3497 ID=mRNA_3497|Name=jgi.p|Nanoce1779_2|582374|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_6:512575..513307+ (Nannochloropsis oceanica)
ATGAAGGTTTTGCTTGGTATCCTATTTGTGAGCACGGCTGCTGTCCAGGC
CTTCCAGCCTCCATCGTTCTTCCTTGCACGTGCCCGCACTCGGGACGCTT
CAATGACCATGCGGCGGGTTACCCCCCATGGCGCTGACACATCTGACCGC
CGCAGTTTGATCCAGAACCAGATATTTCTGCTTGGTGGTAGTGCTGCTAT
AATGAGCTATTTGCCCTCGGCTGTCAAAGCGGATTCCACGGGCAAATATA
GCACGAAACAAACGGCCAAGAAGCGCTACTTGCCTCGCGTGCGCAGAGGC
GTGGCTCTGTTCGCCGCCTTGGGCAAGACGCTGGACAAGCCCGAGACAAT
TCAAGCTTTCTGTATGTACGTAGACGACAACATGGGTACTGCCATGGCAT
TGTACGGTTCCTCCACGCGCATCGGTGAGTTGCCTGACCCCAAGTCCCGC
ACGGTCGATAAGGAGGTGGAAGACTTTGTGAAGGAAATCAAGGCGCTTGC
CAAGGGCGGGGATGTCAATGCAACATACGAGCGTGCCAAGGCTAGCCTTA
TTGCTTATCTGGCTGGTACCAAGCTGGAGCCGTTGGGGGACGTGGCATAT
AATACAACCTCTCTATGA
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Synonyms
Publications