jgi.p|Nanoce1779_2|582373, mRNA_3496 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582373
Unique NamemRNA_3496
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2006
Alignment locationscaffold_6:510477..512599 -

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Properties
Property NameValue
TranscriptId582459
TrackFilteredModels2
ProteinId582373
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:510477..512599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582373gene_3496Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582373mRNA_3496-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3496CDS_3496Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3496 ID=mRNA_3496|Name=jgi.p|Nanoce1779_2|582373|organism=Nannochloropsis oceanica|type=mRNA|length=2006bp
GATCAGCGGATCGGCGATTCAGACGCAAGTAGACGCCACAGCATCATGCC
TGTGCCACCATCACCTCCCCGCACAGAGACATACGCACAACAAACGGGCA
GCGGCATCGCCACCACGATCGCCTGTTCGGTTGCTAGTTGCTGGCTGCAA
AAAGCAGGAGAAGCTGATGAGAAGAAAAGAGGAAGCGGCCTGTCTCATAT
CCTACTTTATCCCCTTTTGTGTCAAGTAAGGCATTGGCCAGTCACTACAC
AGGCATGCGACCACCACACTTCCTCCCCGTTGGCATCCTACTCCTCATCA
CCCTCCCGACGGTCGCTGCATTTCTTCAAACGCCCCCCACTTCCTCTCCT
GTTCCTCCGCGGCATGTACTGTCCCTGCAACGTCGTGGCCCTACCGATGC
CATGCCCGTCTACGATAACAACTGGAATGGCCGCCCGCAGGACCAGCTTC
TCTACACTTTTTTTCGAGAAAAGCTCGTGCAGCAACTCGGCGGCCAGGAC
ACGGCCAGCAAAGACTTTGCGGGGCTCATCCAACTCATTCGGAAATTGAA
CACACATTTCCATGCTACCGGTAAGGCCGGGACGCAGCTCGCAGCGCAGA
ATATCTTGCGTTCTCTTTTTCCTTCCTGGTTGCCAAGAGCGTTTGCCGTC
ATGTTTAGCAAACCTCTGCCTGCGTTCAGTGCGCGAATGAATGCGTATAT
CACGTCCTTGACTACGTTTTGGTTGATGGGCGAGAGTGAGATCATCGATG
TCGACATTGACGGAGGCGGGATAGGGCAAGGCCAGGGGCTGCTGGTGAAA
CGCTGCCGCTACTTGGAGGAAGCGGGGTGTGCCAGTGTGTGTGTTAATAC
CTGCAAGATTCCCACGCAGAATTTTTTCTGTGAAGATATGGGTTTGCCGT
TAACAATGACCCCTGACTACGACGATTTCTCCTGTAAATTCTCCTTCGGT
TTGACTCCGCCCTCCATGGAAGAGGATGACGCGATGAAGGTCGCATGCTT
TTCGCAATGTCCGACCGCCAAGGCAGCGAGCGAAACGTCGCCTAATTGCC
ACCAGATTGACGTATGAGAGGCATGATTTATAATATTTTTGACAACCCGG
GCGGTCTGCTCGTCGTTCTTCGTATGTGCGTGTGTCATGTTGCACACGTA
AGTGAGCTTTACTACTTTCGTTGGCTCGGCTATTGCCGGCGTCACCGATG
TCACTTTCGTTGTCTTCTTCACCTTGGCTTCCAAGAAAATATTATCGCTG
TGACCTCAGATGGGTGGCAAGTAATTTCATGATCTTGACCAGGCCGCAAG
GCCCTTGTTAGGGTTTTGGGGCCCACTCTAGACGTCGCCTGTGGTGAGTT
CCGCTGCGGGACCCGACGAGCAACTTATAGCCAACGATCTTCTCGAAAGG
GTTTTACATATTGTTCCCGCTAGAGTCGTGATTCGATTTGCCATGTGGAA
GCCCGGGCGGGCGGCGAAGCCGGAAGATATATGTCGCTTCTCCTGAGGCG
ATTGTGGATGACAAACTGGCTGCGGGCTGTGGCCGTATCGGGCGTTGTAC
GCCCGGAGCCGTGTCGTGTACGCGCGGCCCTCGGCCATGTGAGCGACGAA
GGTACCTTCCGGCTCGGCCAGAAAAGCGAAGAGCTGTTGCAGGAGGAAAT
GAGTCCGGCCGGCGGCCCCATCGGTTTCGTAGGTTGTTTAGACGTTGCTC
TGACAGTGCTTTTAACCGCCCTGGGATGGATGGGCTGAAGGGATGCGGCA
TTAGTAATGAGTCAAATAGACATAGACATACTCAATCGGTCTTGGGTTGA
TGGATGATGGGGAGGGTGCAGATAGGCGGTGATGGGGTGGATGAGCAGGG
ATATGTGGAGGAACGGGCGGTCTGGCATGAGGTAGAGAATGACGAGGTGT
AAATTATGTGTTAAGAGCTTTGGAAAAGTACCGTGTTAAGTTTGTTTACT
TTCCTTTAGTTGAAAGTGTTATGCTTTGACAAATGACCACTTTCACCATT
CCCCTC
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protein sequence of jgi.p|Nanoce1779_2|582373

>mRNA_3496-protein ID=mRNA_3496-protein|Name=jgi.p|Nanoce1779_2|582373|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MRPPHFLPVGILLLITLPTVAAFLQTPPTSSPVPPRHVLSLQRRGPTDAM
PVYDNNWNGRPQDQLLYTFFREKLVQQLGGQDTASKDFAGLIQLIRKLNT
HFHATGKAGTQLAAQNILRSLFPSWLPRAFAVMFSKPLPAFSARMNAYIT
SLTTFWLMGESEIIDVDIDGGGIGQGQGLLVKRCRYLEEAGCASVCVNTC
KIPTQNFFCEDMGLPLTMTPDYDDFSCKFSFGLTPPSMEEDDAMKVACFS
QCPTAKAASETSPNCHQIDV*
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mRNA from alignment at scaffold_6:510477..512599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3496 ID=mRNA_3496|Name=jgi.p|Nanoce1779_2|582373|organism=Nannochloropsis oceanica|type=mRNA|length=2123bp|location=Sequence derived from alignment at scaffold_6:510477..512599- (Nannochloropsis oceanica)
GATCAGCGGATCGGCGATTCAGACGCAAGTAGACGCCACAGCATCATGCC
TGTGCCACCATCACCTCCCCGCACAGAGACATACGCACAACAAACGGGCA
GCGGCATCGCCACCACGATCGCCTGTTCGGTTGCTAGTTGCTGGCTGCAA
AAAGCAGGAGAAGCTGATGAGAAGAAAAGAGGAAGCGGCCTGTCTCATAT
CCTACTTTATCCCCTTTTGTGTCAAGTAAGGCATTGGCCAGTCACTACAC
AGGCTAGTAACGAATGTAACCTCCCTGTTCTTCTCTGGAACTCTTCTGGA
TAGCCAGCGTCATCTCCGTAGATGGTAAGGAAATAACCTACAACCTGACT
TTTAACCTCCCCTCCCCAGGCATGCGACCACCACACTTCCTCCCCGTTGG
CATCCTACTCCTCATCACCCTCCCGACGGTCGCTGCATTTCTTCAAACGC
CCCCCACTTCCTCTCCTGTTCCTCCGCGGCATGTACTGTCCCTGCAACGT
CGTGGCCCTACCGATGCCATGCCCGTCTACGATAACAACTGGAATGGCCG
CCCGCAGGACCAGCTTCTCTACACTTTTTTTCGAGAAAAGCTCGTGCAGC
AACTCGGCGGCCAGGACACGGCCAGCAAAGACTTTGCGGGGCTCATCCAA
CTCATTCGGAAATTGAACACACATTTCCATGCTACCGGTAAGGCCGGGAC
GCAGCTCGCAGCGCAGAATATCTTGCGTTCTCTTTTTCCTTCCTGGTTGC
CAAGAGCGTTTGCCGTCATGTTTAGCAAACCTCTGCCTGCGTTCAGTGCG
CGAATGAATGCGTATATCACGTCCTTGACTACGTTTTGGTTGATGGGCGA
GAGTGAGATCATCGATGTCGACATTGACGGAGGCGGGATAGGGCAAGGCC
AGGGGCTGCTGGTGAAACGCTGCCGCTACTTGGAGGAAGCGGGGTGTGCC
AGTGTGTGTGTTAATACCTGCAAGATTCCCACGCAGAATTTTTTCTGTGA
AGATATGGGTTTGCCGTTAACAATGACCCCTGACTACGACGATTTCTCCT
GTAAATTCTCCTTCGGTTTGACTCCGCCCTCCATGGAAGAGGATGACGCG
ATGAAGGTCGCATGCTTTTCGCAATGTCCGACCGCCAAGGCAGCGAGCGA
AACGTCGCCTAATTGCCACCAGATTGACGTATGAGAGGCATGATTTATAA
TATTTTTGACAACCCGGGCGGTCTGCTCGTCGTTCTTCGTATGTGCGTGT
GTCATGTTGCACACGTAAGTGAGCTTTACTACTTTCGTTGGCTCGGCTAT
TGCCGGCGTCACCGATGTCACTTTCGTTGTCTTCTTCACCTTGGCTTCCA
AGAAAATATTATCGCTGTGACCTCAGATGGGTGGCAAGTAATTTCATGAT
CTTGACCAGGCCGCAAGGCCCTTGTTAGGGTTTTGGGGCCCACTCTAGAC
GTCGCCTGTGGTGAGTTCCGCTGCGGGACCCGACGAGCAACTTATAGCCA
ACGATCTTCTCGAAAGGGTTTTACATATTGTTCCCGCTAGAGTCGTGATT
CGATTTGCCATGTGGAAGCCCGGGCGGGCGGCGAAGCCGGAAGATATATG
TCGCTTCTCCTGAGGCGATTGTGGATGACAAACTGGCTGCGGGCTGTGGC
CGTATCGGGCGTTGTACGCCCGGAGCCGTGTCGTGTACGCGCGGCCCTCG
GCCATGTGAGCGACGAAGGTACCTTCCGGCTCGGCCAGAAAAGCGAAGAG
CTGTTGCAGGAGGAAATGAGTCCGGCCGGCGGCCCCATCGGTTTCGTAGG
TTGTTTAGACGTTGCTCTGACAGTGCTTTTAACCGCCCTGGGATGGATGG
GCTGAAGGGATGCGGCATTAGTAATGAGTCAAATAGACATAGACATACTC
AATCGGTCTTGGGTTGATGGATGATGGGGAGGGTGCAGATAGGCGGTGAT
GGGGTGGATGAGCAGGGATATGTGGAGGAACGGGCGGTCTGGCATGAGGT
AGAGAATGACGAGGTGTAAATTATGTGTTAAGAGCTTTGGAAAAGTACCG
TGTTAAGTTTGTTTACTTTCCTTTAGTTGAAAGTGTTATGCTTTGACAAA
TGACCACTTTCACCATTCCCCTC
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Coding sequence (CDS) from alignment at scaffold_6:510477..512599-

>mRNA_3496 ID=mRNA_3496|Name=jgi.p|Nanoce1779_2|582373|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at scaffold_6:510477..512599- (Nannochloropsis oceanica)
ATGCGACCACCACACTTCCTCCCCGTTGGCATCCTACTCCTCATCACCCT
CCCGACGGTCGCTGCATTTCTTCAAACGCCCCCCACTTCCTCTCCTGTTC
CTCCGCGGCATGTACTGTCCCTGCAACGTCGTGGCCCTACCGATGCCATG
CCCGTCTACGATAACAACTGGAATGGCCGCCCGCAGGACCAGCTTCTCTA
CACTTTTTTTCGAGAAAAGCTCGTGCAGCAACTCGGCGGCCAGGACACGG
CCAGCAAAGACTTTGCGGGGCTCATCCAACTCATTCGGAAATTGAACACA
CATTTCCATGCTACCGGTAAGGCCGGGACGCAGCTCGCAGCGCAGAATAT
CTTGCGTTCTCTTTTTCCTTCCTGGTTGCCAAGAGCGTTTGCCGTCATGT
TTAGCAAACCTCTGCCTGCGTTCAGTGCGCGAATGAATGCGTATATCACG
TCCTTGACTACGTTTTGGTTGATGGGCGAGAGTGAGATCATCGATGTCGA
CATTGACGGAGGCGGGATAGGGCAAGGCCAGGGGCTGCTGGTGAAACGCT
GCCGCTACTTGGAGGAAGCGGGGTGTGCCAGTGTGTGTGTTAATACCTGC
AAGATTCCCACGCAGAATTTTTTCTGTGAAGATATGGGTTTGCCGTTAAC
AATGACCCCTGACTACGACGATTTCTCCTGTAAATTCTCCTTCGGTTTGA
CTCCGCCCTCCATGGAAGAGGATGACGCGATGAAGGTCGCATGCTTTTCG
CAATGTCCGACCGCCAAGGCAGCGAGCGAAACGTCGCCTAATTGCCACCA
GATTGACGTATGA
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Synonyms
Publications