jgi.p|Nanoce1779_2|525964, mRNA_3491 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525964
Unique NamemRNA_3491
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length729
Alignment locationscaffold_6:491744..492535 +

Link to JBrowse

Properties
Property NameValue
TranscriptId526050
TrackFilteredModels2
ProteinId525964
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:491744..492535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525964gene_3491Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525964mRNA_3491-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3491CDS_3491Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3491 ID=mRNA_3491|Name=jgi.p|Nanoce1779_2|525964|organism=Nannochloropsis oceanica|type=mRNA|length=729bp
ATGCCGAACCCCGTCCATCGCATCCTTCCTCGAAGCAATGTCAAGGAAAG
GATTCTCATCATAGGAGACGTCCACGGCTGCCTCGAAGAACTCCAATCCC
TCCTTATCAAGGCCAATTACTCCCCTCAACAAGACACGGTGATACTCGTC
GGGGACCTGGTCAACAAAGGGCCGCTCTCAGCAGAAACTGTGCAATATTG
TCGAGAGAATAACTTCTTGTCTGTGCGGGGCAACCATGATGATTCTGCGC
TGTCGGCATTTTTCCGGACCGGAAAGTTCAAGGGGATGGCGACTTTGCCT
CCGGCATACGAATATGTGACAAAACTGAAGGAGGAGGATGTGAAATGGTT
AAATGCCTTACCGTACACGTGGTCGATTCCTCACATGGGGGTAGCGGTGG
TGCATGCTGGCATGCTACCCGGAAGGAGCATAGGACGACAAACAGCTTCA
GATATGAGTAGGATGCGTAGTGTGGAGGAAGCGGCGCCGTGGGCGAAGGT
CTGGTCGGAAGAAGGGAAGGAGGAGGGGGGGGGAGAAGTGGAGCAGGAGA
GGCCGCATTTGTATTTTGGGCATGATGCGAGGAGGGGGATCCAGGTGGAA
AGGAAAGCGACAGGATTGGACACTGGCTGTTGTTATGGTCGGGAGCTGAC
CCTGGCGGTGCTCCCGGGGGGAGAGAGGGTGTCGGTGAAGGCTTTCAGGG
CTTACCAGATGCCGCATGGGAAGGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|525964

>mRNA_3491-protein ID=mRNA_3491-protein|Name=jgi.p|Nanoce1779_2|525964|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MPNPVHRILPRSNVKERILIIGDVHGCLEELQSLLIKANYSPQQDTVILV
GDLVNKGPLSAETVQYCRENNFLSVRGNHDDSALSAFFRTGKFKGMATLP
PAYEYVTKLKEEDVKWLNALPYTWSIPHMGVAVVHAGMLPGRSIGRQTAS
DMSRMRSVEEAAPWAKVWSEEGKEEGGGEVEQERPHLYFGHDARRGIQVE
RKATGLDTGCCYGRELTLAVLPGGERVSVKAFRAYQMPHGKE*
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mRNA from alignment at scaffold_6:491744..492535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3491 ID=mRNA_3491|Name=jgi.p|Nanoce1779_2|525964|organism=Nannochloropsis oceanica|type=mRNA|length=792bp|location=Sequence derived from alignment at scaffold_6:491744..492535+ (Nannochloropsis oceanica)
ATGCCGAACCCCGTCCATCGCATCCTTCCTCGAAGCAATGTCAAGGAAAG
GATTCTCATCATAGGAGACGTCCACGGCTGCCTCGAAGAACTCCAATCCC
TCCTTATCAAGGCCAATTACTCCCCTCAACAAGACACGGTGATACTCGTC
GGGGACCTGGTCAACAAAGGGCCGCTCTCAGCAGAAACTGTGCAATATTG
TCGAGAGAATAACTTCTTGTCTGTGCGGGGCAACCATGATGATTCTGCGC
TGTCGGCATTTTTCCGGACCGGAAAGTTCAAGGGGATGGCGACTTTGCCT
CCGGCATACGAATATGTGACAAAACTGAAGGAGGAGGATGTGAAATGGTT
AAATGCCTTACCGTACACGTGGTCGATTCCTCACATGGGGGTAGCGGTGG
TGCATGCTGGCATGCTACCCGGAAGGAGCATAGGACGACAAACAGCTTCA
GATATGAGTAGGATGCGTAGTGTGGTAAAAAGGGGTGGTGAGGGGGAGAA
ATGGTTGGAAGGCGTAGATTACATTCGGGAGAATGAGGAGGAAGCGGCGC
CGTGGGCGAAGGTCTGGTCGGAAGAAGGGAAGGAGGAGGGGGGGGGAGAA
GTGGAGCAGGAGAGGCCGCATTTGTATTTTGGGCATGATGCGAGGAGGGG
GATCCAGGTGGAAAGGAAAGCGACAGGATTGGACACTGGCTGTTGTTATG
GTCGGGAGCTGACCCTGGCGGTGCTCCCGGGGGGAGAGAGGGTGTCGGTG
AAGGCTTTCAGGGCTTACCAGATGCCGCATGGGAAGGAGTAG
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Coding sequence (CDS) from alignment at scaffold_6:491744..492535+

>mRNA_3491 ID=mRNA_3491|Name=jgi.p|Nanoce1779_2|525964|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_6:491744..492535+ (Nannochloropsis oceanica)
ATGCCGAACCCCGTCCATCGCATCCTTCCTCGAAGCAATGTCAAGGAAAG
GATTCTCATCATAGGAGACGTCCACGGCTGCCTCGAAGAACTCCAATCCC
TCCTTATCAAGGCCAATTACTCCCCTCAACAAGACACGGTGATACTCGTC
GGGGACCTGGTCAACAAAGGGCCGCTCTCAGCAGAAACTGTGCAATATTG
TCGAGAGAATAACTTCTTGTCTGTGCGGGGCAACCATGATGATTCTGCGC
TGTCGGCATTTTTCCGGACCGGAAAGTTCAAGGGGATGGCGACTTTGCCT
CCGGCATACGAATATGTGACAAAACTGAAGGAGGAGGATGTGAAATGGTT
AAATGCCTTACCGTACACGTGGTCGATTCCTCACATGGGGGTAGCGGTGG
TGCATGCTGGCATGCTACCCGGAAGGAGCATAGGACGACAAACAGCTTCA
GATATGAGTAGGATGCGTAGTGTGGAGGAAGCGGCGCCGTGGGCGAAGGT
CTGGTCGGAAGAAGGGAAGGAGGAGGGGGGGGGAGAAGTGGAGCAGGAGA
GGCCGCATTTGTATTTTGGGCATGATGCGAGGAGGGGGATCCAGGTGGAA
AGGAAAGCGACAGGATTGGACACTGGCTGTTGTTATGGTCGGGAGCTGAC
CCTGGCGGTGCTCCCGGGGGGAGAGAGGGTGTCGGTGAAGGCTTTCAGGG
CTTACCAGATGCCGCATGGGAAGGAGTAGATGCCGAACCCCGTCCATCGC
ATCCTTCCTCGAAGCAATGTCAAGGAAAGGATTCTCATCATAGGAGACGT
CCACGGCTGCCTCGAAGAACTCCAATCCCTCCTTATCAAGGCCAATTACT
CCCCTCAACAAGACACGGTGATACTCGTCGGGGACCTGGTCAACAAAGGG
CCGCTCTCAGCAGAAACTGTGCAATATTGTCGAGAGAATAACTTCTTGTC
TGTGCGGGGCAACCATGATGATTCTGCGCTGTCGGCATTTTTCCGGACCG
GAAAGTTCAAGGGGATGGCGACTTTGCCTCCGGCATACGAATATGTGACA
AAACTGAAGGAGGAGGATGTGAAATGGTTAAATGCCTTACCGTACACGTG
GTCGATTCCTCACATGGGGGTAGCGGTGGTGCATGCTGGCATGCTACCCG
GAAGGAGCATAGGACGACAAACAGCTTCAGATATGAGTAGGATGCGTAGT
GTGGAGGAAGCGGCGCCGTGGGCGAAGGTCTGGTCGGAAGAAGGGAAGGA
GGAGGGGGGGGGAGAAGTGGAGCAGGAGAGGCCGCATTTGTATTTTGGGC
ATGATGCGAGGAGGGGGATCCAGGTGGAAAGGAAAGCGACAGGATTGGAC
ACTGGCTGTTGTTATGGTCGGGAGCTGACCCTGGCGGTGCTCCCGGGGGG
AGAGAGGGTGTCGGTGAAGGCTTTCAGGGCTTACCAGATGCCGCATGGGA
AGGAGTAG
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Synonyms
Publications