jgi.p|Nanoce1779_2|663146, mRNA_3490 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|663146
Unique Name	mRNA_3490
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1120
Alignment location	scaffold_6:489226..490750 +

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Properties


Property Name	Value
TranscriptId	663232
Track	FilteredModels2
ProteinId	663146

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:489226..490750 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|663146	gene_3490	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|663146	mRNA_3490-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3490	CDS_3490	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:489226..490750+
coding sequence from alignment at scaffold_6:489226..490750+

mRNA sequence

>mRNA_3490 ID=mRNA_3490|Name=jgi.p|Nanoce1779_2|663146|organism=Nannochloropsis oceanica|type=mRNA|length=1120bp
ATGGTGTGCGGAGTGCTGGCGCTAGTGTCACATTTGGAGTCCCTCGCTCA
AGCTTTCACATTCGCACCTGGAGGGTCGTCCTTAGCCCGTCTTCCAAGCA
GGGCCCGCGCCGCTGCCAACCGAGGACTGAACCCTTCCTCTTCCGAGGCC
CTGTTGTGGCAGCTGGGAGGCAGTGCCGTCTTACTGTCGCAAACATGGCC
GCAGCGGCAGCAGCAGCAGCAGTGGCAACGTCATCGTAGCCTCAGGTTAC
ACAATACAATGGGAGTCGGCATCTCAGAATTGGAGATCGTGTCACGCTTG
CTCATGGCTACCTTCGCAGGTGCAGCGATTGGGTTTGAGCGGCGATATTC
AGAGAGACCCGCAGGGTTGCGGACCATGGCGTTGGTCAGTCTTGGTGCGG
CGATCTTCACGATAATTTCCTTGGGTATTCCGGGAGATAAAAGCCGCATG
GCTGCCTCGGTAGCGTCAGGGGTGGGGTTCATTGGTGCGGGAGTGATATC
TCAAAATGGGTTCGAAGAAACGAGTAAGTCGGGGGGACGAAGAATTCAGC
AAGTAAATGGCCTGACCACCGCGACGGCCATCTGGGTGTCAGCGGCGTTA
GGAGTGTCCAGTGGCGCCGGGCTGAATTTATTGACTTTCATGGGGGCGGC
CTTAGCAGTGTGTGTGTTGCGGGTCGGGAGGCTGACTCGGTTGTTGCGAC
TGCGTCGCCGGGATTTTGCGAGCCTGACGGAGAAGACCAAGAAGGCCTTA
AATATCAAGCAGATGGATTTTGGGGCGGGGTACGGGGGGGGAGGGGACAT
GGGGGAAGGGGGAGGGATGATATTTTCGTCGGGAGGAGGTTGTGGCGAAG
GGGAGGGGCCCCCGATCTCGGTAGGTGGAGATTTGGGTGTTTTGGAAGGT
GGTGGTGCCTGAAGATGAAACAGAAAATGACGGCGCTTTTGAGACTAGAT
TAGGGTGGGTAGGGAAAGAGTGTACAGGTGTTTTTGTAGGGAAAAAGACT
CACATTTTTGACGTCCGAAACGAGCTATCGCGAACTTAAAAAATCAATAA
ATAAAATTAAATTGCGCCCCAAAAACACAAAATTAAGACACACGACAAGT
GATGAAAGGCGAGCGCCGCG

protein sequence of jgi.p|Nanoce1779_2|663146

>mRNA_3490-protein ID=mRNA_3490-protein|Name=jgi.p|Nanoce1779_2|663146|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MVCGVLALVSHLESLAQAFTFAPGGSSLARLPSRARAAANRGLNPSSSEA
LLWQLGGSAVLLSQTWPQRQQQQQWQRHRSLRLHNTMGVGISELEIVSRL
LMATFAGAAIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDKSRM
AASVASGVGFIGAGVISQNGFEETSKSGGRRIQQVNGLTTATAIWVSAAL
GVSSGAGLNLLTFMGAALAVCVLRVGRLTRLLRLRRRDFASLTEKTKKAL
NIKQMDFGAGYGGGGDMGEGGGMIFSSGGGCGEGEGPPISVGGDLGVLEG
GGA*

mRNA from alignment at scaffold_6:489226..490750+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3490 ID=mRNA_3490|Name=jgi.p|Nanoce1779_2|663146|organism=Nannochloropsis oceanica|type=mRNA|length=1525bp|location=Sequence derived from alignment at scaffold_6:489226..490750+ (Nannochloropsis oceanica)
ATGGTGTGCGGAGTGCTGGCGCTAGTGTCACATTTGGAGTCCCTCGCTCA
AGCTTTCACATTCGCACCTGGAGGGTCGTCCTTAGCCCGTCTTCCAAGCA
GGGCCCGCGCCGCTGCCAACCGAGGACTGAACCCTTCCTCTTCCGAGGCC
CTGTTGTGGCAGCTGGGAGGCAGTGCCGTCTTACTGTCGCAAACATGGCC
GCAGCGGCAGCAGCAGCAGCAGTGGCAACGTCATCGTAGCCTCAGGTTAC
ACAATACAATGGGAGTCGGCATCTCAGAATTGGAGATCGTGTCACGCTTG
CTCATGGCTACCTTCGCAGGTGCAGCGATTGGGTTTGAGCGGCGATATTC
AGAGAGACCCGCAGGGTTGCGGACCATGGCGTTGGTCAGTCTTGGTGCGG
CGATCTTCACGATAATTTCCTTGGGTATTCCGGGAGATAAAAGCCGCATG
GCTGCCTCGGTAGCGTCAGGGGTGGGGTTCATTGGTGCGGGAGTGATATC
TCAAAATGGGTTCGAAGAAACGAGTAAGTCGGGGGGACGAAGAATTCAGC
AAGTAAATGGCCTGACCACCGCGACGGCCATCTGGGTGTCAGCGGCGTTA
GGAGTGTCCAGTGGCGCCGGGCTGAATTTATTGACTTTCATGGGGGCGGC
CTTAGCAGTGTGTGTGTTGCGGGTCGGGAGGCTGACTCGGTTGTTGCGAC
TGCGTCGCCGGGATTTTGCGAGCCTGACGGAGAAGACCAAGAAGGCCTTA
AATATCAAGGTGACTTCCTCTTCCACCCCTTCCCCGTCCTCCTTCACACC
TTCTTCGGGTTCTTCATCCTTTACTCCTCGTCAGCCACCCCCAAGCACAC
AACAGACATTGCTCGTGGCCGGTGGCGCAGGAGGAGTTGGCACCCTGCAG
TCTCCCTCGCAGTCAGACTCGCCCTTCTTGGTGAGGACCAAAGCAGCAGC
AGCAGCAGCAGCAGCAGAAGCAGCAGCAGAAGCAGCAGCAGCAGCAGCCG
CCGCCGCTTCGTCGAGGAAAATAAACTGGCAAAATCGAGGAGAGAAGGAG
GATGACGTCGGGGAGTTAACGCTAGGCAACCTGGGTTCTTCCAAATTCGG
GATTGGTGTGCCACCGCCGAGTGATTTGTACGAGACGACCAAGGCCGGTG
GGCTGGGTTCGCAGCAGATGGATTTTGGGGCGGGGTACGGGGGGGGAGGG
GACATGGGGGAAGGGGGAGGGATGATATTTTCGTCGGGAGGAGGTTGTGG
CGAAGGGGAGGGGCCCCCGATCTCGGTAGGTGGAGATTTGGGTGTTTTGG
AAGGTGGTGGTGCCTGAAGATGAAACAGAAAATGACGGCGCTTTTGAGAC
TAGATTAGGGTGGGTAGGGAAAGAGTGTACAGGTGTTTTTGTAGGGAAAA
AGACTCACATTTTTGACGTCCGAAACGAGCTATCGCGAACTTAAAAAATC
AATAAATAAAATTAAATTGCGCCCCAAAAACACAAAATTAAGACACACGA
CAAGTGATGAAAGGCGAGCGCCGCG

Coding sequence (CDS) from alignment at scaffold_6:489226..490750+

>mRNA_3490 ID=mRNA_3490|Name=jgi.p|Nanoce1779_2|663146|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_6:489226..490750+ (Nannochloropsis oceanica)
ATGGTGTGCGGAGTGCTGGCGCTAGTGTCACATTTGGAGTCCCTCGCTCA
AGCTTTCACATTCGCACCTGGAGGGTCGTCCTTAGCCCGTCTTCCAAGCA
GGGCCCGCGCCGCTGCCAACCGAGGACTGAACCCTTCCTCTTCCGAGGCC
CTGTTGTGGCAGCTGGGAGGCAGTGCCGTCTTACTGTCGCAAACATGGCC
GCAGCGGCAGCAGCAGCAGCAGTGGCAACGTCATCGTAGCCTCAGGTTAC
ACAATACAATGGGAGTCGGCATCTCAGAATTGGAGATCGTGTCACGCTTG
CTCATGGCTACCTTCGCAGGTGCAGCGATTGGGTTTGAGCGGCGATATTC
AGAGAGACCCGCAGGGTTGCGGACCATGGCGTTGGTCAGTCTTGGTGCGG
CGATCTTCACGATAATTTCCTTGGGTATTCCGGGAGATAAAAGCCGCATG
GCTGCCTCGGTAGCGTCAGGGGTGGGGTTCATTGGTGCGGGAGTGATATC
TCAAAATGGGTTCGAAGAAACGAGTAAGTCGGGGGGACGAAGAATTCAGC
AAGTAAATGGCCTGACCACCGCGACGGCCATCTGGGTGTCAGCGGCGTTA
GGAGTGTCCAGTGGCGCCGGGCTGAATTTATTGACTTTCATGGGGGCGGC
CTTAGCAGTGTGTGTGTTGCGGGTCGGGAGGCTGACTCGGTTGTTGCGAC
TGCGTCGCCGGGATTTTGCGAGCCTGACGGAGAAGACCAAGAAGGCCTTA
AATATCAAGCAGATGGATTTTGGGGCGGGGTACGGGGGGGGAGGGGACAT
GGGGGAAGGGGGAGGGATGATATTTTCGTCGGGAGGAGGTTGTGGCGAAG
GGGAGGGGCCCCCGATCTCGGTAGGTGGAGATTTGGGTGTTTTGGAAGGT
GGTGGTGCCTGAATGGTGTGCGGAGTGCTGGCGCTAGTGTCACATTTGGA
GTCCCTCGCTCAAGCTTTCACATTCGCACCTGGAGGGTCGTCCTTAGCCC
GTCTTCCAAGCAGGGCCCGCGCCGCTGCCAACCGAGGACTGAACCCTTCC
TCTTCCGAGGCCCTGTTGTGGCAGCTGGGAGGCAGTGCCGTCTTACTGTC
GCAAACATGGCCGCAGCGGCAGCAGCAGCAGCAGTGGCAACGTCATCGTA
GCCTCAGGTTACACAATACAATGGGAGTCGGCATCTCAGAATTGGAGATC
GTGTCACGCTTGCTCATGGCTACCTTCGCAGGTGCAGCGATTGGGTTTGA
GCGGCGATATTCAGAGAGACCCGCAGGGTTGCGGACCATGGCGTTGGTCA
GTCTTGGTGCGGCGATCTTCACGATAATTTCCTTGGGTATTCCGGGAGAT
AAAAGCCGCATGGCTGCCTCGGTAGCGTCAGGGGTGGGGTTCATTGGTGC
GGGAGTGATATCTCAAAATGGGTTCGAAGAAACGAGTAAGTCGGGGGGAC
GAAGAATTCAGCAAGTAAATGGCCTGACCACCGCGACGGCCATCTGGGTG
TCAGCGGCGTTAGGAGTGTCCAGTGGCGCCGGGCTGAATTTATTGACTTT
CATGGGGGCGGCCTTAGCAGTGTGTGTGTTGCGGGTCGGGAGGCTGACTC
GGTTGTTGCGACTGCGTCGCCGGGATTTTGCGAGCCTGACGGAGAAGACC
AAGAAGGCCTTAAATATCAAGCAGATGGATTTTGGGGCGGGGTACGGGGG
GGGAGGGGACATGGGGGAAGGGGGAGGGATGATATTTTCGTCGGGAGGAG
GTTGTGGCGAAGGGGAGGGGCCCCCGATCTCGGTAGGTGGAGATTTGGGT
GTTTTGGAAGGTGGTGGTGCCTGA

Synonyms

Publications