jgi.p|Nanoce1779_2|577069, mRNA_349 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577069
Unique NamemRNA_349
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1442
Alignment locationscaffold_3:858865..860793 +

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Properties
Property NameValue
TranscriptId577155
TrackFilteredModels2
ProteinId577069
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:858865..860793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577069gene_349Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577069mRNA_349-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_349CDS_349Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_349 ID=mRNA_349|Name=jgi.p|Nanoce1779_2|577069|organism=Nannochloropsis oceanica|type=mRNA|length=1442bp
ACAGAAACACCATGTTGTTTGCAGCGCGCTCCGCAGGCACCGTGGCTCTG
CGGGGCCTGAGCAGGCAACCACCTGCTACCTTGCGCCAGCCCGCCCGACG
TATGATGGGAGGCGGCGGACACTCTCCTGCTCCTCACCCTTCCCAACCCA
AGCAAGCGTTCCTGTTCAACGAGGGCCCCGGCCCGCGAAAGGTGGAGATC
TGGGAGCCAATTACAAGCATAGTATACTGGTCCACGCTCTTTATTCTTGT
CATCGGGCTTTCCAGCGCGCCGGAGACCCGTATCAAGGAATGGGCAGCGG
AGGAGGCGGAGACACGGTTGGCAAGGATAGAGGAAGGGAAGGACGTGGAG
TATGGAAAGATTTACCACAAACAACTACTCACGGGCGGCTTTGTCGAACA
CACGGCCCTAAATGCTGATAACCCACCCGAAGAGTTGGAAGGGGAGGAGG
AGGATTAAATTGAGAAAGATCAGGAGCAAGTGGATCGATGAAAAATGTGT
TATGTTGAAGAAAAGGGGTGGGTCTTTGTCGGCTGGTGAGCGCCGGCAGT
GTGGTTGGAGAATGACTGAGAAGCAGAGGAAAAAAATAGTCAGTGCAGAC
AAGCGAGAGCAGAGGGAGAAGCAGGAAAAGAATAAGAAGAAGGCGTTGAA
TGGGGAGGGGGAACTATTTTGTCGTCGCATCTTTTCGTGGCTTTCAGGTC
TGTTCCTTCTTACTTGAAGGCTCCCGATCTTCTCGCCTGATCTCGTCATG
ATGTTCGCCGCGTCTCCATGGTGGCGCATACCTTCAGGCATGCAAATGCC
ACCTTTATACAACCCACGACTGCCCAATAAGCCCGTAAATACAACGAATA
CAAACGCAGAAATATATTCTACGTTGTCATTGCCTTGCCCTACATTAGAC
GTTTCTTATCGTGCGGCACACCTTGTATGACGCAATCCCCTCCACTCTCA
CGCCACAAGGGTCACACAAACAAGCCGTGGCCTCTGCACGGGGAATATGG
CGGCGTCATTGTCGGCGCTTTACGACGATGCCTTTGCGGCGTTGGAACGA
GCCATTGCCTTGGACAGGCTTGAAAAGGAGGAAAAGGGACAGACAAGGGC
GGAGGACCGAACCGTGCTCCAATATGAGGCGGCCATAGACCTCTTCCAGC
AATGCTACGACCGCGAATCAGATGTTTCGAGGAAAATTCTCGTGGAAAGC
AAGATGCGCGAGTATGGCAAGCGACTGGCAACATTGAAAGCGACAGTGGC
GGACAGGCGATGGACCGAGGCCAAGGCCCTGGATGCCGGCAGGAGCAAGG
CAGCGACCGACGACCAAGACGAAGCAGTTGCAGGCGCATACCTCGAAGCT
GTGGAATTGTATTTGGGCTCCATGAAGCTTCAATGCAACGACGAGGTGCA
AGATGTGGCGCTAAGGGGCCGTGTCAATTCTATCCTGGATCG
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protein sequence of jgi.p|Nanoce1779_2|577069

>mRNA_349-protein ID=mRNA_349-protein|Name=jgi.p|Nanoce1779_2|577069|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MLFAARSAGTVALRGLSRQPPATLRQPARRMMGGGGHSPAPHPSQPKQAF
LFNEGPGPRKVEIWEPITSIVYWSTLFILVIGLSSAPETRIKEWAAEEAE
TRLARIEEGKDVEYGKIYHKQLLTGGFVEHTALNADNPPEELEGEEED*
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mRNA from alignment at scaffold_3:858865..860793+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_349 ID=mRNA_349|Name=jgi.p|Nanoce1779_2|577069|organism=Nannochloropsis oceanica|type=mRNA|length=1929bp|location=Sequence derived from alignment at scaffold_3:858865..860793+ (Nannochloropsis oceanica)
ACAGAAACACCATGTTGTTTGCAGCGCGCTCCGCAGGCACCGTGGCTCTG
CGGGGCCTGAGCAGGCAACCACCTGCTACCTTGCGCCAGCCCGCCCGACG
TATGATGGGAGGCGGCGGACACTCTCCTGCTCCTCACCCTTCCCAACCCA
AGCAAGCGTTCCTGTTCAACGAGGGCCCCGGCCCGCGAAAGGTGGAGATC
TGGGAGCCAATTACAAGCATAGTATACTGGTCCACGCTCTTTATTCTTGT
CATCGGGCTTTCCAGCGCGCCGGAGACCCGTATCAAGGTATGTGTTGGGT
GCCGGTGGGGTTGTGCGTTGGGTGGGATAAAGCACCCGGCTGGGATTGGA
CGGATAGTGCAGTGCTTCGGCCGGTAGAAAATCATGTTTGGCTGACTCTT
TTACTTTGATAGTAGTTGCGTGCGAAATTGGCGACTATGATGCGACCTTT
CTCCAACCTCTTTGGCCCTCTCTCTTCGTGCATGAGCGTGAAAGTACGTT
AGTAGACCGTACTTGTTCTCACTTTACCAAAGAAAATACGGTGACACACC
GTTCTTGTTCTCACTTCGACAAACAAACGCACTTTTCGAATTACAGGAAT
GGGCAGCGGAGGAGGCGGAGACACGGTTGGCAAGGATAGAGGAAGGGAAG
GACGTGGAGTATGGAAAGATTTACCACAAACAACTACTCACGGGCGGCTT
TGTCGAACACACGGCCCTAAATGCTGATAACCCACCCGAAGAGTTGGAAG
GGGAGGAGGAGGATTAAATTGAGAAAGATCAGGAGCAAGTGGATCGATGA
AAAATGTGTTATGTTGAAGAAAAGGGGTGGGTCTTTGTCGGCTGGTGAGC
GCCGGCAGTGTGGTTGGAGAATGACTGAGAAGCAGAGGAAAAAAATAGTC
AGTGCAGACAAGCGAGAGCAGAGGGAGAAGCAGGAAAAGAATAAGAAGAA
GGCGTTGAATGGGGAGGGGGAACTATTTTGTCGTCGCATCTTTTCGTGGC
TTTCAGGTCTGTTCCTTCTTACTTGAAGGCTCCCGATCTTCTCGCCTGAT
CTCGTCATGATGTTCGCCGCGTCTCCATGGTGGCGCATACCTTCAGGCAT
GCAAATGCCACCTTTATACAACCCACGACTGCCCAATAAGCCCGTAAATA
CAACGAATACAAACGCAGAAATATATTCTACGTTGTCATTGCCTTGCCCT
ACATTAGACGTTTCTTATCGTGCGGCACACCTTGTATGACGCAATCCCCT
CCACTCTCACGCCACAAGGGTCACACAAACAAGCCGTGGCCTCTGCACGG
GGAATATGGCGGCGTCATTGTCGGCGCTTTACGACGATGCCTTTGCGGCG
TTGGAACGAGCCATTGCCTTGGACAGGCTTGAAAAGGAGGAAAAGGGACA
GACAAGGGCGGAGGACCGAACCGTGCTCCAATATGAGGCGGCCATAGACC
TCTTCCAGCAATGCTACGACCGCGAATCAGATGTTTCGAGGAAAATTCTC
GTGGAAAGCAAGATGCGCGAGTATGGCAAGCGACTGGCAACATTGAAAGC
GACAGTGGCGGACAGGCGATGGACCGAGGCCAAGGCCCTGGATGCCGGCA
GGAGCAAGGCAGCGACCGACGACCAAGACGAAGCAGTTGCAGGCGCATAC
CTCGAAGCTGTGGAATTGTATTTGGGCTCCATGAAGCTTCAATGCAACGA
CGAGGTGCAAGATGTGGCGCTAAGGGTATGTGTGCATGCGTCTTGGCTCT
TTGAAGGGGAAGGAGACTTTAACCTTTGTGCTCGTTTAGAAGAGGTATTG
ATTGAGATTGCATTGATGCGCGAAGTGACCCTCTTGGACATCATCGTTGA
TAACCTTGCGTTGACTGACTATTATCTTCTATATTCTCCCCCATTTTATC
AAGGGCCGTGTCAATTCTATCCTGGATCG
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Coding sequence (CDS) from alignment at scaffold_3:858865..860793+

>mRNA_349 ID=mRNA_349|Name=jgi.p|Nanoce1779_2|577069|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at scaffold_3:858865..860793+ (Nannochloropsis oceanica)
ATGTTGTTTGCAGCGCGCTCCGCAGGCACCGTGGCTCTGCGGGGCCTGAG
CAGGCAACCACCTGCTACCTTGCGCCAGCCCGCCCGACGTATGATGGGAG
GCGGCGGACACTCTCCTGCTCCTCACCCTTCCCAACCCAAGCAAGCGTTC
CTGTTCAACGAGGGCCCCGGCCCGCGAAAGGTGGAGATCTGGGAGCCAAT
TACAAGCATAGTATACTGGTCCACGCTCTTTATTCTTGTCATCGGGCTTT
CCAGCGCGCCGGAGACCCGTATCAAGGAATGGGCAGCGGAGGAGGCGGAG
ACACGGTTGGCAAGGATAGAGGAAGGGAAGGACGTGGAGTATGGAAAGAT
TTACCACAAACAACTACTCACGGGCGGCTTTGTCGAACACACGGCCCTAA
ATGCTGATAACCCACCCGAAGAGTTGGAAGGGGAGGAGGAGGATTAAATG
TTGTTTGCAGCGCGCTCCGCAGGCACCGTGGCTCTGCGGGGCCTGAGCAG
GCAACCACCTGCTACCTTGCGCCAGCCCGCCCGACGTATGATGGGAGGCG
GCGGACACTCTCCTGCTCCTCACCCTTCCCAACCCAAGCAAGCGTTCCTG
TTCAACGAGGGCCCCGGCCCGCGAAAGGTGGAGATCTGGGAGCCAATTAC
AAGCATAGTATACTGGTCCACGCTCTTTATTCTTGTCATCGGGCTTTCCA
GCGCGCCGGAGACCCGTATCAAGGAATGGGCAGCGGAGGAGGCGGAGACA
CGGTTGGCAAGGATAGAGGAAGGGAAGGACGTGGAGTATGGAAAGATTTA
CCACAAACAACTACTCACGGGCGGCTTTGTCGAACACACGGCCCTAAATG
CTGATAACCCACCCGAAGAGTTGGAAGGGGAGGAGGAGGATTAA
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Synonyms
Publications