jgi.p|Nanoce1779_2|552878, mRNA_3489 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|552878
Unique NamemRNA_3489
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1164
Alignment locationscaffold_6:486895..488283 -

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Properties
Property NameValue
TranscriptId552964
TrackFilteredModels2
ProteinId552878
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:486895..488283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552878gene_3489Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552878mRNA_3489-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3489CDS_3489Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3489 ID=mRNA_3489|Name=jgi.p|Nanoce1779_2|552878|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
AAAAGACAGGTTACACGCGCAACCATTCGACACTCTAAAAAAATGGATTT
CCTGCCACCGCATCTGCGGGTGCCTGCTGCCGTAGCCTCCTACTCGGTAT
GCAGCGGGACCATGCTTCTGTTCAACAAACTGGCCATGTACTACGTGCCC
GTCCCGTCTTTCGTGACAGTTGTCCAACTACTCTTCGCCGTTGGCATCAT
CCTCCTCCTTCAACGCCTGCACATCGTCCCCCCCGATCCTCTGGAAAGCA
GCAGAGTCAAACCCTACCTTGTCTACACTGTCGCCTTCGTCTTGGGCGTG
TACTGCAACATGCGCGCCCTTTCTCACTCGAACGTTGAGACGGTCATTAT
CTTTCGGTCCTGTACCCCTTTAGCTGTCTCGTTGTGTGACTTCATTTTCC
TGGGGCGGGAGTTGCCTTCCCGTCGGTCGTGCTTGGCTCTGTTGACGATT
GCGGCGGGTGCCTACGGTTATGTCCAAACCGATAGCCAGTTTAAGATGGA
TGGGCTGGCGGCATATTCGTGGGCGATTCTATATTTTGTGACCATCTGTT
TCGAGATGACGTACGGGAAGAAGATCACGAGTGGAGTGAGGTTTAACAGC
ATGTGGGGCCCTACTTTTTACACGAATTTTTTGAGTGTCGCGCCGATGTT
TTGCCTGGGTTATCTAATGGGAGATTTCCAGGACTTTAGTTTGATGGAGG
GAGGGAGTGGGTTAGGGGGTGGGGAAGCGTGGATGTGGACGAAGATGGGC
TTGGTCATGTTGGCGGTTAGTTCTGTCGTGGGGACGTTGATAGGGTACAC
GGGGTGGAGTTGTAGGAGCTTGGTGTCGGCGACCACGTTTACGCTGGTGG
GGGTTATTAATAAGTTTATCACAATTCTCTTGAATGTGTTCATTTGGGAT
AAGCATGCGTCGCCGCTGGGGATTTCGGCGTTGGTGCTTTGTTTGGTGGG
GGGGTCGTTCTACCAGCAGGCGCCGATGCGGGCGGTTGACAAGCCGTTGG
GCGCGGACGAGTTTTTTAAGCTAGGGTATCAGATGGAGATGGACGAGTAT
GATAGCAAGGAGGTATTGAAGGGGGCAGGGTCCATTGAGGCGGTGCCGTT
GATTATGTCCACGGAGGGGGGAAGGAATGGGGGGGAGAAGCAGGTCCCGG
TGGGTGCGGTCTAA
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protein sequence of jgi.p|Nanoce1779_2|552878

>mRNA_3489-protein ID=mRNA_3489-protein|Name=jgi.p|Nanoce1779_2|552878|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MDFLPPHLRVPAAVASYSVCSGTMLLFNKLAMYYVPVPSFVTVVQLLFAV
GIILLLQRLHIVPPDPLESSRVKPYLVYTVAFVLGVYCNMRALSHSNVET
VIIFRSCTPLAVSLCDFIFLGRELPSRRSCLALLTIAAGAYGYVQTDSQF
KMDGLAAYSWAILYFVTICFEMTYGKKITSGVRFNSMWGPTFYTNFLSVA
PMFCLGYLMGDFQDFSLMEGGSGLGGGEAWMWTKMGLVMLAVSSVVGTLI
GYTGWSCRSLVSATTFTLVGVINKFITILLNVFIWDKHASPLGISALVLC
LVGGSFYQQAPMRAVDKPLGADEFFKLGYQMEMDEYDSKEVLKGAGSIEA
VPLIMSTEGGRNGGEKQVPVGAV*
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mRNA from alignment at scaffold_6:486895..488283-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3489 ID=mRNA_3489|Name=jgi.p|Nanoce1779_2|552878|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp|location=Sequence derived from alignment at scaffold_6:486895..488283- (Nannochloropsis oceanica)
AAAAGACAGGTTACACGCGCAACCATTCGACACTCTAAAAAAATGGATTT
CCTGCCACCGCATCTGCGGGTGCCTGCTGCCGTAGCCTCCTACTCGGTAT
GCAGCGGGACCATGCTTCTGTTCAACAAACTGGCCATGTACTACGGTATG
TCTCGTGTTCGAGGAAAATACGGGGAGAAAAAGGCGGAGACGGAGGACAG
AGTGACAGATAGTTGGGTGATAAAAGGGTATCAAGACGCACGAGGACGCT
TATGAGACTGGGGCCTGCCACACTCGAGCTTCAGTACTTCGCCCACCCCG
CGTCGGCGCACGATTTACCAACCTCGTACCTCATTTTCACTCTCTCTCCT
TTCTCCACCTACACAAACAGTGCCCGTCCCGTCTTTCGTGACAGTTGTCC
AACTACTCTTCGCCGTTGGCATCATCCTCCTCCTTCAACGCCTGCACATC
GTCCCCCCCGATCCTCTGGAAAGCAGCAGAGTCAAACCCTACCTTGTCTA
CACTGTCGCCTTCGTCTTGGGCGTGTACTGCAACATGCGCGCCCTTTCTC
ACTCGAACGTTGAGACGGTCATTATCTTTCGGTCCTGTACCCCTTTAGCT
GTCTCGTTGTGTGACTTCATTTTCCTGGGGCGGGAGTTGCCTTCCCGTCG
GTCGTGCTTGGCTCTGTTGACGATTGCGGCGGGTGCCTACGGTTATGTCC
AAACCGATAGCCAGTTTAAGATGGATGGGCTGGCGGCATATTCGTGGGCG
ATTCTATATTTTGTGACCATCTGTTTCGAGATGACGTACGGGAAGAAGAT
CACGAGTGGAGTGAGGTTTAACAGCATGTGGGGCCCTACTTTTTACACGA
ATTTTTTGAGTGTCGCGCCGATGTTTTGCCTGGGTTATCTAATGGGAGAT
TTCCAGGACTTTAGTTTGATGGAGGGAGGGAGTGGGTTAGGGGGTGGGGA
AGCGTGGATGTGGACGAAGATGGGCTTGGTCATGTTGGCGGTTAGTTCTG
TCGTGGGGACGTTGATAGGGTACACGGGGTGGAGTTGTAGGAGCTTGGTG
TCGGCGACCACGTTTACGCTGGTGGGGGTTATTAATAAGTTTATCACAAT
TCTCTTGAATGTGTTCATTTGGGATAAGCATGCGTCGCCGCTGGGGATTT
CGGCGTTGGTGCTTTGTTTGGTGGGGGGGTCGTTCTACCAGCAGGCGCCG
ATGCGGGCGGTTGACAAGCCGTTGGGCGCGGACGAGTTTTTTAAGCTAGG
GTATCAGATGGAGATGGACGAGTATGATAGCAAGGAGGTATTGAAGGGGG
CAGGGTCCATTGAGGCGGTGCCGTTGATTATGTCCACGGAGGGGGGAAGG
AATGGGGGGGAGAAGCAGGTCCCGGTGGGTGCGGTCTAA
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Coding sequence (CDS) from alignment at scaffold_6:486895..488283-

>mRNA_3489 ID=mRNA_3489|Name=jgi.p|Nanoce1779_2|552878|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_6:486895..488283- (Nannochloropsis oceanica)
TGCCCGTCCCGTCTTTCGTGACAGTTGTCCAACTACTCTTCGCCGTTGGC
ATCATCCTCCTCCTTCAACGCCTGCACATCGTCCCCCCCGATCCTCTGGA
AAGCAGCAGAGTCAAACCCTACCTTGTCTACACTGTCGCCTTCGTCTTGG
GCGTGTACTGCAACATGCGCGCCCTTTCTCACTCGAACGTTGAGACGGTC
ATTATCTTTCGGTCCTGTACCCCTTTAGCTGTCTCGTTGTGTGACTTCAT
TTTCCTGGGGCGGGAGTTGCCTTCCCGTCGGTCGTGCTTGGCTCTGTTGA
CGATTGCGGCGGGTGCCTACGGTTATGTCCAAACCGATAGCCAGTTTAAG
ATGGATGGGCTGGCGGCATATTCGTGGGCGATTCTATATTTTGTGACCAT
CTGTTTCGAGATGACGTACGGGAAGAAGATCACGAGTGGAGTGAGGTTTA
ACAGCATGTGGGGCCCTACTTTTTACACGAATTTTTTGAGTGTCGCGCCG
ATGTTTTGCCTGGGTTATCTAATGGGAGATTTCCAGGACTTTAGTTTGAT
GGAGGGAGGGAGTGGGTTAGGGGGTGGGGAAGCGTGGATGTGGACGAAGA
TGGGCTTGGTCATGTTGGCGGTTAGTTCTGTCGTGGGGACGTTGATAGGG
TACACGGGGTGGAGTTGTAGGAGCTTGGTGTCGGCGACCACGTTTACGCT
GGTGGGGGTTATTAATAAGTTTATCACAATTCTCTTGAATGTGTTCATTT
GGGATAAGCATGCGTCGCCGCTGGGGATTTCGGCGTTGGTGCTTTGTTTG
GTGGGGGGGTCGTTCTACCAGCAGGCGCCGATGCGGGCGGTTGACAAGCC
GTTGGGCGCGGACGAGTTTTTTAAGCTAGGGTATCAGATGGAGATGGACG
AGTATGATAGCAAGGAGGTATTGAAGGGGGCAGGGTCCATTGAGGCGGTG
CCGTTGATTATGTCCACGGAGGGGGGAAGGAATGGGGGGGAGAAGCAGGT
CCCGGTGGGTGCGGTCTAAATGGATTTCCTGCCACCGCATCTGCGGGTGC
CTGCTGCCGTAGCCTCCTACTCGGTATGCAGCGGGACCATGCTTCTGTTC
AACAAACTGGCCATGTACTACGTGCCCGTCCCGTCTTTCGTGACAGTTGT
CCAACTACTCTTCGCCGTTGGCATCATCCTCCTCCTTCAACGCCTGCACA
TCGTCCCCCCCGATCCTCTGGAAAGCAGCAGAGTCAAACCCTACCTTGTC
TACACTGTCGCCTTCGTCTTGGGCGTGTACTGCAACATGCGCGCCCTTTC
TCACTCGAACGTTGAGACGGTCATTATCTTTCGGTCCTGTACCCCTTTAG
CTGTCTCGTTGTGTGACTTCATTTTCCTGGGGCGGGAGTTGCCTTCCCGT
CGGTCGTGCTTGGCTCTGTTGACGATTGCGGCGGGTGCCTACGGTTATGT
CCAAACCGATAGCCAGTTTAAGATGGATGGGCTGGCGGCATATTCGTGGG
CGATTCTATATTTTGTGACCATCTGTTTCGAGATGACGTACGGGAAGAAG
ATCACGAGTGGAGTGAGGTTTAACAGCATGTGGGGCCCTACTTTTTACAC
GAATTTTTTGAGTGTCGCGCCGATGTTTTGCCTGGGTTATCTAATGGGAG
ATTTCCAGGACTTTAGTTTGATGGAGGGAGGGAGTGGGTTAGGGGGTGGG
GAAGCGTGGATGTGGACGAAGATGGGCTTGGTCATGTTGGCGGTTAGTTC
TGTCGTGGGGACGTTGATAGGGTACACGGGGTGGAGTTGTAGGAGCTTGG
TGTCGGCGACCACGTTTACGCTGGTGGGGGTTATTAATAAGTTTATCACA
ATTCTCTTGAATGTGTTCATTTGGGATAAGCATGCGTCGCCGCTGGGGAT
TTCGGCGTTGGTGCTTTGTTTGGTGGGGGGGTCGTTCTACCAGCAGGCGC
CGATGCGGGCGGTTGACAAGCCGTTGGGCGCGGACGAGTTTTTTAAGCTA
GGGTATCAGATGGAGATGGACGAGTATGATAGCAAGGAGGTATTGAAGGG
GGCAGGGTCCATTGAGGCGGTGCCGTTGATTATGTCCACGGAGGGGGGAA
GGAATGGGGGGGAGAAGCAGGTCCCGGTGGGTGCGGTCTAAATGGATTTC
CTGCCACCGCATCTGCGGGTGCCTGCTGCCGTAGCCTCCTACTCGGTATG
CAGCGGGACCATGCTTCTGTTCAACAAACTGGCCATGTACTACG
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Synonyms
Publications