jgi.p|Nanoce1779_2|582341, mRNA_3488 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582341
Unique NamemRNA_3488
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length729
Alignment locationscaffold_6:485520..486539 +

Link to JBrowse

Properties
Property NameValue
TranscriptId582427
TrackFilteredModels2
ProteinId582341
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:485520..486539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582341gene_3488Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582341mRNA_3488-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3488CDS_3488Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3488 ID=mRNA_3488|Name=jgi.p|Nanoce1779_2|582341|organism=Nannochloropsis oceanica|type=mRNA|length=729bp
ACAGAACGCCTAAGGAAAACATGCCGTCCAAAGCAAACATCTACGGCCAC
CCCATTCACCCAATGCTCATAGATTTCCCGATTGTCTGCTTCATTTTGGC
TTTTTCTGCTGATGTCGTGTACGAAGCTGGGTTGGCAGGCTCTGACTGGT
CCCAGTTTGCGTACATTTTGCTCATTGTCGGCATCGCGACGGCCATTGCA
GCGGCTATTGCGGGTCTGGTCGAATATTCCATTATTTTCGACGAGGAGAC
CACGCAGACGGCCAATGCACATATGACCTTAAACGTGATGGTCCTTGTCT
TGCAAGTAGTCAACCTTTCCTTTCGTGGATATGCCAAGGACAATCATTAC
TGGCGGCACGGTTGGATCTTGAGCTTGGTAAGCGTCGTCCTCATTGCTAT
CAGCTCGTGGCTCGGGAGCACGCTGGTATACACACACAAGATGGGCTTCC
GCAACCCGGTCCGTCCAAATAACTTCTGAAATTACACTCGACAGAGTGCC
ATGCCTCGCCCGCCGTTGGCTGGTCAGCGACGAGGAGGTTTGGTACCGAT
TTGAGGATGGATGGTGGTAGAGGGGTAGGAAGGGAGGAAGGGAGAGGAAT
GAGAGAAGGATGAAATGCGATACCTTTCAAGGAAAGATATGCACGGACGT
GCAGGTGATAATTAAGAGCAGATTATGGAAAAGGGGGATAGAACGGACAT
GCACAGACGGACACAGAATCAAAAACCAC
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protein sequence of jgi.p|Nanoce1779_2|582341

>mRNA_3488-protein ID=mRNA_3488-protein|Name=jgi.p|Nanoce1779_2|582341|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MPSKANIYGHPIHPMLIDFPIVCFILAFSADVVYEAGLAGSDWSQFAYIL
LIVGIATAIAAAIAGLVEYSIIFDEETTQTANAHMTLNVMVLVLQVVNLS
FRGYAKDNHYWRHGWILSLVSVVLIAISSWLGSTLVYTHKMGFRNPVRPN
NF*
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mRNA from alignment at scaffold_6:485520..486539+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3488 ID=mRNA_3488|Name=jgi.p|Nanoce1779_2|582341|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp|location=Sequence derived from alignment at scaffold_6:485520..486539+ (Nannochloropsis oceanica)
ACAGAACGCCTAAGGAAAACATGCCGTCCAAAGCAAACATCTACGGCCAC
CCCATTCACCCAATGCTCATAGATTTCCCGATTGTCTGCTTCATTTTGGC
TTTTTCTGCTGATGTCGTGTACGAAGCTGGGTTGGCAGGCTCTGACTGGT
CCCAGTTTGCGTACATTTTGCTCATTGTCGGCATCGCGACGGCCATTGCA
GCGGCTATTGCGGGTCTGGTCGAATATTCCATTATTTTGTACGTATGAAA
GCGTATGGCTTCGAAGACTCTTGATTTGCGGTCCCAAGAGTCACTCAAAT
CATCCTTATGTCGCTTTTCCGAACACATTCCAAGCGACGAGGAGACCACG
CAGACGGCCAATGCACATATGACCTTAAACGTGATGGTCCTTGTCTTGCA
AGTAGTCAACCTTTCCTTTCGTGGATATGCCAAGGACAATCATTACTGGC
GGCACGGTTGGATCTTGAGCTTGGTAAGCGTCGTCCTCATTGCTATCAGC
TCGTGGCTCGGGAGCACGCTGGTATACACACACAAGATGGGCGTAAGTAT
GAAGTGGGACGGACCATCGGCCACATCCATTCTCTTTCATATGTAACTGT
ATGTTTAGTGATTGTATTTCATATTTTACTCGTGATTAAAAAAGCGTCAA
ATCTATTCTTCCCCATCCATCCCGCCACTGCCTCTTTTTTTCTGTCGGGT
ATTCAACCTTTCGAAAACCTCATCTTATTCTTGACAGTTCCGCAACCCGG
TCCGTCCAAATAACTTCTGAAATTACACTCGACAGAGTGCCATGCCTCGC
CCGCCGTTGGCTGGTCAGCGACGAGGAGGTTTGGTACCGATTTGAGGATG
GATGGTGGTAGAGGGGTAGGAAGGGAGGAAGGGAGAGGAATGAGAGAAGG
ATGAAATGCGATACCTTTCAAGGAAAGATATGCACGGACGTGCAGGTGAT
AATTAAGAGCAGATTATGGAAAAGGGGGATAGAACGGACATGCACAGACG
GACACAGAATCAAAAACCAC
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Coding sequence (CDS) from alignment at scaffold_6:485520..486539+

>mRNA_3488 ID=mRNA_3488|Name=jgi.p|Nanoce1779_2|582341|organism=Nannochloropsis oceanica|type=CDS|length=1377bp|location=Sequence derived from alignment at scaffold_6:485520..486539+ (Nannochloropsis oceanica)
ATGCCGTCCAAAGCAAACATCTACGGCCACCCCATTCACCCAATGCTCAT
AGATTTCCCGATTGTCTGCTTCATTTTGGCTTTTTCTGCTGATGTCGTGT
ACGAAGCTGGGTTGGCAGGCTCTGACTGGTCCCAGTTTGCGTACATTTTG
CTCATTGTCGGCATCGCGACGGCCATTGCAGCGGCTATTGCGGGTCTGGT
CGAATATTCCATTATTTTCGACGAGGAGACCACGCAGACGGCCAATGCAC
ATATGACCTTAAACGTGATGGTCCTTGTCTTGCAAGTAGTCAACCTTTCC
TTTCGTGGATATGCCAAGGACAATCATTACTGGCGGCACGGTTGGATCTT
GAGCTTGGTAAGCGTCGTCCTCATTGCTATCAGCTCGTGGCTCGGGAGCA
CGCTGGTATACACACACAAGATGGGCTTCCGCAACCCGGTCCGTCCAAAT
AACTTCTGAATGCCGTCCAAAGCAAACATCTACGGCCACCCCATTCACCC
AATGCTCATAGATTTCCCGATTGTCTGCTTCATTTTGGCTTTTTCTGCTG
ATGTCGTGTACGAAGCTGGGTTGGCAGGCTCTGACTGGTCCCAGTTTGCG
TACATTTTGCTCATTGTCGGCATCGCGACGGCCATTGCAGCGGCTATTGC
GGGTCTGGTCGAATATTCCATTATTTTCGACGAGGAGACCACGCAGACGG
CCAATGCACATATGACCTTAAACGTGATGGTCCTTGTCTTGCAAGTAGTC
AACCTTTCCTTTCGTGGATATGCCAAGGACAATCATTACTGGCGGCACGG
TTGGATCTTGAGCTTGGTAAGCGTCGTCCTCATTGCTATCAGCTCGTGGC
TCGGGAGCACGCTGGTATACACACACAAGATGGGCTTCCGCAACCCGGTC
CGTCCAAATAACTTCTGAATGCCGTCCAAAGCAAACATCTACGGCCACCC
CATTCACCCAATGCTCATAGATTTCCCGATTGTCTGCTTCATTTTGGCTT
TTTCTGCTGATGTCGTGTACGAAGCTGGGTTGGCAGGCTCTGACTGGTCC
CAGTTTGCGTACATTTTGCTCATTGTCGGCATCGCGACGGCCATTGCAGC
GGCTATTGCGGGTCTGGTCGAATATTCCATTATTTTCGACGAGGAGACCA
CGCAGACGGCCAATGCACATATGACCTTAAACGTGATGGTCCTTGTCTTG
CAAGTAGTCAACCTTTCCTTTCGTGGATATGCCAAGGACAATCATTACTG
GCGGCACGGTTGGATCTTGAGCTTGGTAAGCGTCGTCCTCATTGCTATCA
GCTCGTGGCTCGGGAGCACGCTGGTATACACACACAAGATGGGCTTCCGC
AACCCGGTCCGTCCAAATAACTTCTGA
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Synonyms
Publications