jgi.p|Nanoce1779_2|582331, mRNA_3486 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582331
Unique NamemRNA_3486
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length981
Alignment locationscaffold_6:480643..481623 +

Link to JBrowse

Properties
Property NameValue
TranscriptId582417
TrackFilteredModels2
ProteinId582331
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:480643..481623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582331gene_3486Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582331mRNA_3486-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3486CDS_3486Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3486 ID=mRNA_3486|Name=jgi.p|Nanoce1779_2|582331|organism=Nannochloropsis oceanica|type=mRNA|length=981bp
CAGAACTTACAGCTGCACGGGTGCCTTTCACCAATACAACAATGCTAGCA
TCTCTCGACCACGAAGGCGGCTTTTCTGCCCCTGATACTGCTTCTCATTT
GGACTGGGCTCCTCAAATTGAGAAAGAACAATTGACGCCCCCATTGCACC
TACATCGCGAGATCGACAGAGGATACATAAGTGCTCTAGGCCGGTCGTTG
GAAGCTTTAACGGAAAAGGTTGGCCGCCTTGAAAAGTCAGGCAATCAAGT
CGCAAATGATGTGGCAGCGGGAGAGCCGTGCTTAGTGGCACCTGGAGCTG
CAGCGGCAGCAATAGCAGGCGACGACGACAGGCGCTGTCTTCCTTCTCTG
CACCGATTTGTTCGAGAGTCAGGGCATTGCATCACTCAGCTAGACTACCC
TGCAGCGCAGGATGGTACGCGTGCTCTCCTCTGTTTAATGCAGTATTCGC
GGCAACATTGCAAGCCCATTTACCAGCAATATAGCTTGGACAAATTTCGT
GCCCTGATTGACAGCAGATTGCTCTTTCAGTCCATAGGATTGAGTAAAGA
AGAGTCATTAGACATGCGCATGGCCGACTTGGAGAGTAGAGTGCGAGAAT
TGGAGAGACAGGTGGACAAGTCGCTGCCGCCACCCTCCTGCCCTAAAATG
CTACATTTGGAGCGTGCGCTTAACAAGGTAAGTGATGATGCTAAAGAAAA
TTGGCTGCGGGAATTCGGCGCTTTGCATGAGAGACTCATCAAAACGCGAA
ACAGATGGCTAGAGAGCATCATGCAATGCGGGCTGTCATGGCGAGCATGA
GCTACTTAATCGAAGCCCTCAGCGCCAGCGTCATGGTGGAGGACAAGCAA
GACGTAAAATAAACGACAATTCCTCCCAAAGATTCGCAGCACACAGACTA
ACGCGATGGAAAGGAAGAACATTCCTCTTTAATATTTTCGGCGTCCGTCC
GTCCTCAGTGCCTCATCGATAAAGTAAAGAC
back to top

protein sequence of jgi.p|Nanoce1779_2|582331

>mRNA_3486-protein ID=mRNA_3486-protein|Name=jgi.p|Nanoce1779_2|582331|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MLASLDHEGGFSAPDTASHLDWAPQIEKEQLTPPLHLHREIDRGYISALG
RSLEALTEKVGRLEKSGNQVANDVAAGEPCLVAPGAAAAAIAGDDDRRCL
PSLHRFVRESGHCITQLDYPAAQDGTRALLCLMQYSRQHCKPIYQQYSLD
KFRALIDSRLLFQSIGLSKEESLDMRMADLESRVRELERQVDKSLPPPSC
PKMLHLERALNKVSDDAKENWLREFGALHERLIKTRNRWLESIMQCGLSW
RA*
back to top

mRNA from alignment at scaffold_6:480643..481623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3486 ID=mRNA_3486|Name=jgi.p|Nanoce1779_2|582331|organism=Nannochloropsis oceanica|type=mRNA|length=981bp|location=Sequence derived from alignment at scaffold_6:480643..481623+ (Nannochloropsis oceanica)
CAGAACTTACAGCTGCACGGGTGCCTTTCACCAATACAACAATGCTAGCA
TCTCTCGACCACGAAGGCGGCTTTTCTGCCCCTGATACTGCTTCTCATTT
GGACTGGGCTCCTCAAATTGAGAAAGAACAATTGACGCCCCCATTGCACC
TACATCGCGAGATCGACAGAGGATACATAAGTGCTCTAGGCCGGTCGTTG
GAAGCTTTAACGGAAAAGGTTGGCCGCCTTGAAAAGTCAGGCAATCAAGT
CGCAAATGATGTGGCAGCGGGAGAGCCGTGCTTAGTGGCACCTGGAGCTG
CAGCGGCAGCAATAGCAGGCGACGACGACAGGCGCTGTCTTCCTTCTCTG
CACCGATTTGTTCGAGAGTCAGGGCATTGCATCACTCAGCTAGACTACCC
TGCAGCGCAGGATGGTACGCGTGCTCTCCTCTGTTTAATGCAGTATTCGC
GGCAACATTGCAAGCCCATTTACCAGCAATATAGCTTGGACAAATTTCGT
GCCCTGATTGACAGCAGATTGCTCTTTCAGTCCATAGGATTGAGTAAAGA
AGAGTCATTAGACATGCGCATGGCCGACTTGGAGAGTAGAGTGCGAGAAT
TGGAGAGACAGGTGGACAAGTCGCTGCCGCCACCCTCCTGCCCTAAAATG
CTACATTTGGAGCGTGCGCTTAACAAGGTAAGTGATGATGCTAAAGAAAA
TTGGCTGCGGGAATTCGGCGCTTTGCATGAGAGACTCATCAAAACGCGAA
ACAGATGGCTAGAGAGCATCATGCAATGCGGGCTGTCATGGCGAGCATGA
GCTACTTAATCGAAGCCCTCAGCGCCAGCGTCATGGTGGAGGACAAGCAA
GACGTAAAATAAACGACAATTCCTCCCAAAGATTCGCAGCACACAGACTA
ACGCGATGGAAAGGAAGAACATTCCTCTTTAATATTTTCGGCGTCCGTCC
GTCCTCAGTGCCTCATCGATAAAGTAAAGAC
back to top

Coding sequence (CDS) from alignment at scaffold_6:480643..481623+

>mRNA_3486 ID=mRNA_3486|Name=jgi.p|Nanoce1779_2|582331|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_6:480643..481623+ (Nannochloropsis oceanica)
ATGCTAGCATCTCTCGACCACGAAGGCGGCTTTTCTGCCCCTGATACTGC
TTCTCATTTGGACTGGGCTCCTCAAATTGAGAAAGAACAATTGACGCCCC
CATTGCACCTACATCGCGAGATCGACAGAGGATACATAAGTGCTCTAGGC
CGGTCGTTGGAAGCTTTAACGGAAAAGGTTGGCCGCCTTGAAAAGTCAGG
CAATCAAGTCGCAAATGATGTGGCAGCGGGAGAGCCGTGCTTAGTGGCAC
CTGGAGCTGCAGCGGCAGCAATAGCAGGCGACGACGACAGGCGCTGTCTT
CCTTCTCTGCACCGATTTGTTCGAGAGTCAGGGCATTGCATCACTCAGCT
AGACTACCCTGCAGCGCAGGATGGTACGCGTGCTCTCCTCTGTTTAATGC
AGTATTCGCGGCAACATTGCAAGCCCATTTACCAGCAATATAGCTTGGAC
AAATTTCGTGCCCTGATTGACAGCAGATTGCTCTTTCAGTCCATAGGATT
GAGTAAAGAAGAGTCATTAGACATGCGCATGGCCGACTTGGAGAGTAGAG
TGCGAGAATTGGAGAGACAGGTGGACAAGTCGCTGCCGCCACCCTCCTGC
CCTAAAATGCTACATTTGGAGCGTGCGCTTAACAAGGTAAGTGATGATGC
TAAAGAAAATTGGCTGCGGGAATTCGGCGCTTTGCATGAGAGACTCATCA
AAACGCGAAACAGATGGCTAGAGAGCATCATGCAATGCGGGCTGTCATGG
CGAGCATGA
back to top
Synonyms
Publications