jgi.p|Nanoce1779_2|582328, mRNA_3485 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582328
Unique Name	mRNA_3485
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2510
Alignment location	scaffold_6:479114..481623 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582414
Track	FilteredModels2
ProteinId	582328

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:479114..481623 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582328	gene_3485	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582328	mRNA_3485-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3485	CDS_3485	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:479114..481623+
coding sequence from alignment at scaffold_6:479114..481623+

mRNA sequence

>mRNA_3485 ID=mRNA_3485|Name=jgi.p|Nanoce1779_2|582328|organism=Nannochloropsis oceanica|type=mRNA|length=2510bp
AGGGTTTGGGGTCTGGGAGAGGGAGAAAGCGTGTCACGGGGCGAACACCT
TCCACTCGTTTGAGTTGGGTACCCGGGCACAGCTTCGACACGACGACAAC
AGCAACGACGACAAAAACTGGTAGTCGCTAGCTACTAAATAAAATAAACC
AGAACCATGGGGACTCCTGACCTAAAGGCACTGACAATGGACTTCACGAT
GATTGGGGCCTTCGTGTTGGCAGTGAACGGATGCGCACTCTACACATTGC
AGCGAGTCATCAAAAGAATTATTCCTCGGATCTTCTGGGCATTAGTGATC
TTGTGCTTGCCCGTCCTGGGTGCATTGATCTTCTTCTTCATCCGGCCTCG
GGACCCGATGAAGTCTCTGGAGGATGACGAATTCGAAGAGCCAGAGTTCG
AAATAGTGTCCCCGAGGATCTGTACTTTGGGAGATAAAACAAGCTCGCCT
ACCACGCCTTGTATCATTCGTAACCTGTCTATACCGCCACTTAAAACCCC
TGAGGGCGCCTTCTCGTCGAGCGCGAACTTCATGTATGCGCCGTCAAGTT
AGAGAGGGGAGAATGAAAGAGTGGTCGGGAAGGGGAGGGAGTGGGAGTTA
GGATGACACTCTGACAGTGGATGGTCTTTGTGGTGGCATTAAGGACAAGT
AAAGGAGCAAGAAATGTTCGTGGGAAGGCGGATAGGTGGACAGGAAGGAT
GTTGGAAAGGCGGGTGGGTTGGGGTTTAATGCGGAGGAAGAGCTGATAAG
AAAACAAATGTAGCCCAGGTGGACAAAGAATCCTCCTGCTACTGCTCGTA
TGGCTGTTGCTCCGAGTGAGCTGAGGAGAAAAGGTGCTAGAAAGAGTAAG
GAAAAGGTAGTGGAATAGAGAATGAGAGGAAGAGATTAAGAGAGAAAAAG
CAGTATGAGATGTAGAGAGGAGGGAGGGAGGAGACAATAACGGCTCTATA
AGTTTGACTCACGAATATCTTCATGCACAAATATATATACACATGTATAT
GTATATACAAATGAAGATGTAAATATACATATAGATATGTATGTGTGTTC
GTGGCGTCGGGTGTATAGAGAGCACTGGACCGCGGACTCTGACTAGTCAA
TAAGGCTCAGAGAGCAAGAAGACAAAGAGAGAGAGCAGGAGGGGGAGAGA
GAGAATAATAAACCAACACGGTTCAGTCATCAAAATCGTTTGTTCCGCAG
TTAACCTTAAGAACTTTCGTATACAGAATTAAAGAAAAGAAATTACATAA
TTAGGCCTAGAAGAGCGTTACACCATACACCACATGTTTTGGTAGGGAGA
GGAGATGATTCGTTCTTCGTTCCCAAGGTATAGAAAAAGGAATATTAAGA
AAAAAAAATCATCGAGAGAAAGGGTAATGGACTAAGATGATGGCGAAATC
TCTGTCAAAGAGAACAAAAAACTGATTATGTTGACCTGTTCGTTGACCCG
TTCGACCCGTTGGACCCCCGGGCGGGCCATACTCAAAATGATGCTTCGCT
GCGCTTTTCACTGTCTTGACTTCGACCCTCAGAACTTACAGCTGCACGGG
TGCCTTTCACCAATACAACAATGCTAGCATCTCTCGACCACGAAGGCGGC
TTTTCTGCCCCTGATACTGCTTCTCATTTGGACTGGGCTCCTCAAATTGA
GAAAGAACAATTGACGCCCCCATTGCACCTACATCGCGAGATCGACAGAG
GATACATAAGTGCTCTAGGCCGGTCGTTGGAAGCTTTAACGGAAAAGGTT
GGCCGCCTTGAAAAGTCAGGCAATCAAGTCGCAAATGATGTGGCAGCGGG
AGAGCCGTGCTTAGTGGCACCTGGAGCTGCAGCGGCAGCAATAGCAGGCG
ACGACGACAGGCGCTGTCTTCCTTCTCTGCACCGATTTGTTCGAGAGTCA
GGGCATTGCATCACTCAGCTAGACTACCCTGCAGCGCAGGATGGTACGCG
TGCTCTCCTCTGTTTAATGCAGTATTCGCGGCAACATTGCAAGCCCATTT
ACCAGCAATATAGCTTGGACAAATTTCGTGCCCTGATTGACAGCAGATTG
CTCTTTCAGTCCATAGGATTGAGTAAAGAAGAGTCATTAGACATGCGCAT
GGCCGACTTGGAGAGTAGAGTGCGAGAATTGGAGAGACAGGTGGACAAGT
CGCTGCCGCCACCCTCCTGCCCTAAAATGCTACATTTGGAGCGTGCGCTT
AACAAGGTAAGTGATGATGCTAAAGAAAATTGGCTGCGGGAATTCGGCGC
TTTGCATGAGAGACTCATCAAAACGCGAAACAGATGGCTAGAGAGCATCA
TGCAATGCGGGCTGTCATGGCGAGCATGAGCTACTTAATCGAAGCCCTCA
GCGCCAGCGTCATGGTGGAGGACAAGCAAGACGTAAAATAAACGACAATT
CCTCCCAAAGATTCGCAGCACACAGACTAACGCGATGGAAAGGAAGAACA
TTCCTCTTTAATATTTTCGGCGTCCGTCCGTCCTCAGTGCCTCATCGATA
AAGTAAAGAC

protein sequence of jgi.p|Nanoce1779_2|582328

>mRNA_3485-protein ID=mRNA_3485-protein|Name=jgi.p|Nanoce1779_2|582328|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MGTPDLKALTMDFTMIGAFVLAVNGCALYTLQRVIKRIIPRIFWALVILC
LPVLGALIFFFIRPRDPMKSLEDDEFEEPEFEIVSPRICTLGDKTSSPTT
PCIIRNLSIPPLKTPEGAFSSSANFMYAPSS*

mRNA from alignment at scaffold_6:479114..481623+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3485 ID=mRNA_3485|Name=jgi.p|Nanoce1779_2|582328|organism=Nannochloropsis oceanica|type=mRNA|length=2510bp|location=Sequence derived from alignment at scaffold_6:479114..481623+ (Nannochloropsis oceanica)
AGGGTTTGGGGTCTGGGAGAGGGAGAAAGCGTGTCACGGGGCGAACACCT
TCCACTCGTTTGAGTTGGGTACCCGGGCACAGCTTCGACACGACGACAAC
AGCAACGACGACAAAAACTGGTAGTCGCTAGCTACTAAATAAAATAAACC
AGAACCATGGGGACTCCTGACCTAAAGGCACTGACAATGGACTTCACGAT
GATTGGGGCCTTCGTGTTGGCAGTGAACGGATGCGCACTCTACACATTGC
AGCGAGTCATCAAAAGAATTATTCCTCGGATCTTCTGGGCATTAGTGATC
TTGTGCTTGCCCGTCCTGGGTGCATTGATCTTCTTCTTCATCCGGCCTCG
GGACCCGATGAAGTCTCTGGAGGATGACGAATTCGAAGAGCCAGAGTTCG
AAATAGTGTCCCCGAGGATCTGTACTTTGGGAGATAAAACAAGCTCGCCT
ACCACGCCTTGTATCATTCGTAACCTGTCTATACCGCCACTTAAAACCCC
TGAGGGCGCCTTCTCGTCGAGCGCGAACTTCATGTATGCGCCGTCAAGTT
AGAGAGGGGAGAATGAAAGAGTGGTCGGGAAGGGGAGGGAGTGGGAGTTA
GGATGACACTCTGACAGTGGATGGTCTTTGTGGTGGCATTAAGGACAAGT
AAAGGAGCAAGAAATGTTCGTGGGAAGGCGGATAGGTGGACAGGAAGGAT
GTTGGAAAGGCGGGTGGGTTGGGGTTTAATGCGGAGGAAGAGCTGATAAG
AAAACAAATGTAGCCCAGGTGGACAAAGAATCCTCCTGCTACTGCTCGTA
TGGCTGTTGCTCCGAGTGAGCTGAGGAGAAAAGGTGCTAGAAAGAGTAAG
GAAAAGGTAGTGGAATAGAGAATGAGAGGAAGAGATTAAGAGAGAAAAAG
CAGTATGAGATGTAGAGAGGAGGGAGGGAGGAGACAATAACGGCTCTATA
AGTTTGACTCACGAATATCTTCATGCACAAATATATATACACATGTATAT
GTATATACAAATGAAGATGTAAATATACATATAGATATGTATGTGTGTTC
GTGGCGTCGGGTGTATAGAGAGCACTGGACCGCGGACTCTGACTAGTCAA
TAAGGCTCAGAGAGCAAGAAGACAAAGAGAGAGAGCAGGAGGGGGAGAGA
GAGAATAATAAACCAACACGGTTCAGTCATCAAAATCGTTTGTTCCGCAG
TTAACCTTAAGAACTTTCGTATACAGAATTAAAGAAAAGAAATTACATAA
TTAGGCCTAGAAGAGCGTTACACCATACACCACATGTTTTGGTAGGGAGA
GGAGATGATTCGTTCTTCGTTCCCAAGGTATAGAAAAAGGAATATTAAGA
AAAAAAAATCATCGAGAGAAAGGGTAATGGACTAAGATGATGGCGAAATC
TCTGTCAAAGAGAACAAAAAACTGATTATGTTGACCTGTTCGTTGACCCG
TTCGACCCGTTGGACCCCCGGGCGGGCCATACTCAAAATGATGCTTCGCT
GCGCTTTTCACTGTCTTGACTTCGACCCTCAGAACTTACAGCTGCACGGG
TGCCTTTCACCAATACAACAATGCTAGCATCTCTCGACCACGAAGGCGGC
TTTTCTGCCCCTGATACTGCTTCTCATTTGGACTGGGCTCCTCAAATTGA
GAAAGAACAATTGACGCCCCCATTGCACCTACATCGCGAGATCGACAGAG
GATACATAAGTGCTCTAGGCCGGTCGTTGGAAGCTTTAACGGAAAAGGTT
GGCCGCCTTGAAAAGTCAGGCAATCAAGTCGCAAATGATGTGGCAGCGGG
AGAGCCGTGCTTAGTGGCACCTGGAGCTGCAGCGGCAGCAATAGCAGGCG
ACGACGACAGGCGCTGTCTTCCTTCTCTGCACCGATTTGTTCGAGAGTCA
GGGCATTGCATCACTCAGCTAGACTACCCTGCAGCGCAGGATGGTACGCG
TGCTCTCCTCTGTTTAATGCAGTATTCGCGGCAACATTGCAAGCCCATTT
ACCAGCAATATAGCTTGGACAAATTTCGTGCCCTGATTGACAGCAGATTG
CTCTTTCAGTCCATAGGATTGAGTAAAGAAGAGTCATTAGACATGCGCAT
GGCCGACTTGGAGAGTAGAGTGCGAGAATTGGAGAGACAGGTGGACAAGT
CGCTGCCGCCACCCTCCTGCCCTAAAATGCTACATTTGGAGCGTGCGCTT
AACAAGGTAAGTGATGATGCTAAAGAAAATTGGCTGCGGGAATTCGGCGC
TTTGCATGAGAGACTCATCAAAACGCGAAACAGATGGCTAGAGAGCATCA
TGCAATGCGGGCTGTCATGGCGAGCATGAGCTACTTAATCGAAGCCCTCA
GCGCCAGCGTCATGGTGGAGGACAAGCAAGACGTAAAATAAACGACAATT
CCTCCCAAAGATTCGCAGCACACAGACTAACGCGATGGAAAGGAAGAACA
TTCCTCTTTAATATTTTCGGCGTCCGTCCGTCCTCAGTGCCTCATCGATA
AAGTAAAGAC

Coding sequence (CDS) from alignment at scaffold_6:479114..481623+

>mRNA_3485 ID=mRNA_3485|Name=jgi.p|Nanoce1779_2|582328|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_6:479114..481623+ (Nannochloropsis oceanica)
ATGGGGACTCCTGACCTAAAGGCACTGACAATGGACTTCACGATGATTGG
GGCCTTCGTGTTGGCAGTGAACGGATGCGCACTCTACACATTGCAGCGAG
TCATCAAAAGAATTATTCCTCGGATCTTCTGGGCATTAGTGATCTTGTGC
TTGCCCGTCCTGGGTGCATTGATCTTCTTCTTCATCCGGCCTCGGGACCC
GATGAAGTCTCTGGAGGATGACGAATTCGAAGAGCCAGAGTTCGAAATAG
TGTCCCCGAGGATCTGTACTTTGGGAGATAAAACAAGCTCGCCTACCACG
CCTTGTATCATTCGTAACCTGTCTATACCGCCACTTAAAACCCCTGAGGG
CGCCTTCTCGTCGAGCGCGAACTTCATGTATGCGCCGTCAAGTTAG

Synonyms

Publications