jgi.p|Nanoce1779_2|582309, mRNA_3482 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582309
Unique NamemRNA_3482
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length720
Alignment locationscaffold_6:466609..467562 -

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Properties
Property NameValue
TranscriptId582395
TrackFilteredModels2
ProteinId582309
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:466609..467562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582309gene_3482Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582309mRNA_3482-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3482CDS_3482Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3482 ID=mRNA_3482|Name=jgi.p|Nanoce1779_2|582309|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
GCATACCGCAGAACAAGCAACAGCAACAGTCACGCTCTATACCAGCCCAG
TCTTACTTTCACACAAGAAGCTTCTCGACATCTTGAAATGGCGTCGAGCA
AAGCTACCTCCAGCAAAGGCAAAGCCATTCAAGCCCTGAGTGAAGAGCAG
CGACAAGAAATTAAGGAGGCTTTTGACTTATTTGACACAGAGGGCACGGG
GCATATTGACAGCAAGGAATTGCGCATAGCCATGCGCGCCTTAGGTTTTG
AGCCCAGAAAGGAGGAGGTCGCCCGGTTGGTGGCATCGGCAGTGGACGGA
GACGAAAGTGGCAGCATCTCATACAAACATTTTGTGGAAATTATGGCAGT
CAAACTGGGAGAGAAGGACGGTCGAGAGGAGATGGCCAAGGCCTTTCGAT
TATTTGATGCGGGCGAGAAGGGCGTGATAAGTTTTCAGGATTTGAAGCGA
GTGGCCCGGGAATTGGGCGAGTCAATGACGGACGAGGAGTTGCAGGAGAT
GATTGATGAGGCGGACCGGGACGGCGACGGGCTCATCAACGAGGAGGAAT
TTATGCGGATCATGAAGAAGTCAAGCTTGTTTTAAAAGTAGGAAGGAAGG
AGGGAGATGAGACGGTCGGCCCCCAAGGGGACGTTTGGACAGACAGCGGG
AAATCCATTTACAAACAGCATGTGTATATGTCTTTTCAATCAATAAAGAA
GAATGCTGATTCAGGGACCA
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protein sequence of jgi.p|Nanoce1779_2|582309

>mRNA_3482-protein ID=mRNA_3482-protein|Name=jgi.p|Nanoce1779_2|582309|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MASSKATSSKGKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMR
ALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMA
KAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLI
NEEEFMRIMKKSSLF*
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mRNA from alignment at scaffold_6:466609..467562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3482 ID=mRNA_3482|Name=jgi.p|Nanoce1779_2|582309|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at scaffold_6:466609..467562- (Nannochloropsis oceanica)
GCATACCGCAGAACAAGCAACAGCAACAGTCACGCTCTATACCAGCCCAG
TCTTACTTTCACACAAGAAGCTTCTCGACATCTTGAAATGGCGTCGAGCA
AAGCTACCTCCAGCAAAGGCAAAGCCATTCAAGCCCTGAGTGAAGAGCAG
CGACAAGAAATTAAGGAGGCTTTTGACTTATTTGACACAGAGGGCACGGG
GCATATTGACAGCAAGGAATTGCGCATAGCCATGCGCGCCTTAGGTTTTG
AGCCCAGAAAGGAGGAGGTCGCCCGGTTGGTGGCATCGGCAGTGGACGGA
GACGAAAGTGGCAGCATCTCATACAAACATTTTGTGGAAATTATGGCAGT
CAAACTGGGAGAGAAGGACGGTCGAGAGGAGATGGCCAAGGCCTTTCGAT
TATTTGATGCGGGCGAGAAGGGCGTGATAAGTTTTCAGGATTTGAAGCGA
GTGGCCCGGGAATTGGGCGAGTCAATGACGGACGAGGAGTTGCAGGAGAT
GATTGGTACGTTTGAAGGGAAGGATGGGAGAAAGTTGGGGTATGAACGGA
TTTTTTGTAAAAGCGCTAGGTAGGGTTCGAGGAACATACATGAATTTTCC
TTTTCGACGAATGAAATTAAGCATGGCTTTGTGATGAATGAGAGAGGAGA
GGAATGACATTTCTATCTTCATTTTACTTCATACATTTTCTTACCTTTTT
CTTCCCCTCCTGTTTTTCCTTTCCCTTTTCTCTTACCAGATGAGGCGGAC
CGGGACGGCGACGGGCTCATCAACGAGGAGGAATTTATGCGGATCATGAA
GAAGTCAAGCTTGTTTTAAAAGTAGGAAGGAAGGAGGGAGATGAGACGGT
CGGCCCCCAAGGGGACGTTTGGACAGACAGCGGGAAATCCATTTACAAAC
AGCATGTGTATATGTCTTTTCAATCAATAAAGAAGAATGCTGATTCAGGG
ACCA
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Coding sequence (CDS) from alignment at scaffold_6:466609..467562-

>mRNA_3482 ID=mRNA_3482|Name=jgi.p|Nanoce1779_2|582309|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_6:466609..467562- (Nannochloropsis oceanica)
ATGAGGCGGACCGGGACGGCGACGGGCTCATCAACGAGGAGGAATTTATG
CGGATCATGAAGAAGTCAAGCTTGTTTTAAATGGCGTCGAGCAAAGCTAC
CTCCAGCAAAGGCAAAGCCATTCAAGCCCTGAGTGAAGAGCAGCGACAAG
AAATTAAGGAGGCTTTTGACTTATTTGACACAGAGGGCACGGGGCATATT
GACAGCAAGGAATTGCGCATAGCCATGCGCGCCTTAGGTTTTGAGCCCAG
AAAGGAGGAGGTCGCCCGGTTGGTGGCATCGGCAGTGGACGGAGACGAAA
GTGGCAGCATCTCATACAAACATTTTGTGGAAATTATGGCAGTCAAACTG
GGAGAGAAGGACGGTCGAGAGGAGATGGCCAAGGCCTTTCGATTATTTGA
TGCGGGCGAGAAGGGCGTGATAAGTTTTCAGGATTTGAAGCGAGTGGCCC
GGGAATTGGGCGAGTCAATGACGGACGAGGAGTTGCAGGAGATGATTGAT
GAGGCGGACCGGGACGGCGACGGGCTCATCAACGAGGAGGAATTTATGCG
GATCATGAAGAAGTCAAGCTTGTTTTAAATGGCGTCGAGCAAAGCTACCT
CCAGCAAAGGCAAAGCCATTCAAGCCCTGAGTGAAGAGCAGCGACAAGAA
ATTAAGGAGGCTTTTGACTTATTTGACACAGAGGGCACGGGGCATATTGA
CAGCAAGGAATTGCGCATAGCCATGCGCGCCTTAGGTTTTGAGCCCAGAA
AGGAGGAGGTCGCCCGGTTGGTGGCATCGGCAGTGGACGGAGACGAAAGT
GGCAGCATCTCATACAAACATTTTGTGGAAATTATGGCAGTCAAACTGGG
AGAGAAGGACGGTCGAGAGGAGATGGCCAAGGCCTTTCGATTATTTGATG
CGGGCGAGAAGGGCGTGATAAGTTTTCAGGATTTGAAGCGAGTGGCCCGG
GAATTGGGCGAGTCAATGACGGACGAGGAGTTGCAGGAGATGATTG
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Synonyms
Publications