jgi.p|Nanoce1779_2|582291, mRNA_3480 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582291
Unique Name	mRNA_3480
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1815
Alignment location	scaffold_6:460232..462422 -

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Properties


Property Name	Value
TranscriptId	582377
Track	FilteredModels2
ProteinId	582291

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:460232..462422 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582291	gene_3480	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582291	mRNA_3480-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3480	CDS_3480	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:460232..462422-
coding sequence from alignment at scaffold_6:460232..462422-

mRNA sequence

>mRNA_3480 ID=mRNA_3480|Name=jgi.p|Nanoce1779_2|582291|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
ACAGACAGATAGGCTGGTATTGAGTCCCAGTTAGGACCGAACACTTTCGG
CCCCCTCAAAGACAACACATACAACACATGGTCTCTTACAGTGCCGTCCG
ACATGTCCGTGGGTTAAAGATGGCATTCTCACGGTCGCAAGCCCTGCCAT
TTATGATTGCTGGCGTCGCTGTGGGTGTATGCATGCACTCCATGTTCAAG
CACGACTCCGCCGGTGGTAAGAAGACTGGTGGCCTTCTGACGTCGTTTAT
GGACCTTGGCGAGGCTGCGCAATATGATGACACTTGTCACAATTCCTGGG
TGCTGACGCATGTCAATGCCGAAATGCAACGAATTGTGGAGGAAAAGAAC
GCGGCCTGGTATGATGCCCTGCCCAAAATACTGGAGGGCGCGTATGACAA
AAACACGCTGACTAGGGCAGGAAACGGGGGCGACCCTATTGAACCCTTGA
ACTGGAACCGCTTCGACGTCATGATGCCCCCGGTAGAGGGTGCGTGCGAA
ATGCAGAGGATCGGGCTTAAGGACGGGGATGGTGGGAAGTTTGTTTGTGG
TATTCAAGACATCCCCGACAATAAGGATCGGCCTTGCATTATCTACTCCA
TTGGTATGTAACCTGCAAGATGATTTCGGAAGAGTCAGCAACAGTAAGAA
GCTTATCGTTATCTTTGACTTTCTCAGTTTTGAACGGTGGTGTTGTTGGA
CGAGCTTAAAAGACAAGCAACTCGTTCTATCAGTAACACGCCATCGACCC
CCCGGTATCTATTTCTCCGATTTCCTCTATTTAGGCTCCAATCACGTATG
GGACTTCGAGGAAGACGCTTACAACTCCACCCGCTGTACTATTCACACCT
TTGACTGTACCGTGCAGTCAAACTCCATGCCGGAATACATCCGCGATCGA
GCCACATTTCACAAAATCTGTATGGGCAGTTCCGAAAATAGCAGTGAAGG
AAAAATATTTATGAATTTAAAGGAGGTAATGGATATGCTGGGTCACTCGT
ACGTGACGTTACTCAAGGCCGACATCGAGGGCTTCGAGTTCGACCTTTTC
AACGAGATCTTGACCGTGGATGAAGTAGAGCTTCCCGAGCAGATCTCGTT
CGAACTCCACTACAGAACTATAATTAGTGAATTGCCCTGGATGCCCCGGC
AAAAGACCGCAGGGGAAATCGCCTTGTTGGGCACGCGTTTGTACGAGCAG
GGCTATAGAGTGCTGTCTCGCGAGGATAATGTGTTGTGTCCGCATTGTAC
GGAAATCACCATCGCGCGTTTCCGCTGCCCGAAAGGGCCCCGCAGCCAGA
CCAAGAAGCTAGCCTTGAGGATGCAGGAACGTCAGAGAGGCGCGGTGTCC
TATTTACAAGAGCAGCAACAGTAAGGATGATGAGGTGAATGAGACAGGGG
CTACAGGATGACGGAAAATTACGAAAAGGAAGGGACCGGGCTGTCTGATA
AAGTGTTTGCGGTGTGAGGGCGAGATGCATGTGGCCGGGGGCTGAAGCGT
TGGTGGAATATTACGAAAGGGAAGGGGCCGAAATATCTAATAGAATTTTC
TGGTTGGAAGATCACCATCAATAAATGAGGGAGGTGCACGGAGTAGCGAT
GATATCGGGGGTGGGGAGGACGGGAGAAGGGATGTTGGCGAGTGAGAATT
GTTCTTAACAAAGAGCTGGTCTTGGAAACCATATGGAATAAAACGTTAAT
TAAGACGTATGTACCTATACTTGAATTTTTTACCTACCTTCTGTCTTCCT
TATCACGGCTAAGCCGTGGAAAGAGGGAGCAAAGGGAACAGAGGATTAAT
CTTGCGTTGAGAAAT

protein sequence of jgi.p|Nanoce1779_2|582291

>mRNA_3480-protein ID=mRNA_3480-protein|Name=jgi.p|Nanoce1779_2|582291|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MVGSLFVVFKTSPTIRIGLALSTPLVCNLQDDFGRVSNSKKLIVIFDFLS
FERWCCWTSLKDKQLVLSVTRHRPPGIYFSDFLYLGSNHVWDFEEDAYNS
TRCTIHTFDCTVQSNSMPEYIRDRATFHKICMGSSENSSEGKIFMNLKEV
MDMLGHSYVTLLKADIEGFEFDLFNEILTVDEVELPEQISFELHYRTIIS
ELPWMPRQKTAGEIALLGTRLYEQGYRVLSREDNVLCPHCTEITIARFRC
PKGPRSQTKKLALRMQERQRGAVSYLQEQQQ*

mRNA from alignment at scaffold_6:460232..462422-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3480 ID=mRNA_3480|Name=jgi.p|Nanoce1779_2|582291|organism=Nannochloropsis oceanica|type=mRNA|length=2191bp|location=Sequence derived from alignment at scaffold_6:460232..462422- (Nannochloropsis oceanica)
ACAGACAGATAGGCTGGTATTGAGTCCCAGTTAGGACCGAACACTTTCGG
CCCCCTCAAAGACAACACATACAACACATGGTCTCTTACAGTGCCGTCCG
ACATGTCCGTGGGTTAAAGATGGCATTCTCACGGTCGCAAGCCCTGCCAT
TTATGATTGCTGGCGTCGCTGTGGGTGTATGCATGCACTCCATGTTCAAG
CACGACTCCGCCGGTGGTAAGAAGACTGGTGGCCTTCTGACGTCGTTTAT
GGACCTTGGCGAGGCTGCGCAATATGATGACACTTGTCACAATTCCTGGG
TGCTGACGCATGTCAATGCCGAAATGCAACGAATTGTGGAGGAAAAGAAC
GCGGCCTGGTATGATGCCCTGCCCAAAATACTGGAGGGCGCGTATGACAA
AAACACGCTGACTAGGGCAGGAAACGGGGGCGACCCTATTGAACCCTTGA
ACTGGAACCGCTTCGACGTCATGATGCCCCCGGTAGAGGGTGCGTGCGAA
ATGCAGAGGATCGGGCTTAAGGACGGGGATGGTGGGAAGTTTGTTTGTGG
TATTCAAGACATCCCCGACAATAAGGATCGGCCTTGCATTATCTACTCCA
TTGGTATGTAACCTGCAAGATGATTTCGGAAGAGTCAGCAACAGTAAGAA
GCTTATCGTTATCTTTGACTTTCTCAGTTTTGAACGGTGGTGTTGTTGGA
CGAGCTTAAAAGACAAGCAACTCGTTCTATCAGTAACACGCCATCGACCC
CCCGGTATCTATTTCTCCGATTTCCTCTATTTAGGCTCCAATCACGTATG
GGACTTCGAGGAAGACGCTTACAACTCCACCCGCTGTACTATTCACACCT
TTGACTGTACCGTGCAGTCAAACTCCATGCCGGAATACATCCGCGATCGA
GCCACATTTCACAAAATCTGTATGGGCAGTTCCGAAAATAGCAGTGAAGG
AAAAATATTTATGAATTTAAAGGAGGTAATGGATATGCTGGGTCACTCGT
ACGTGACGTTACTCAAGGTAAGGAGAAAGTGACGGATGGAAGGAGAGAAA
AGAGACAGAACTTTTGCATTTGCATGTGTTTTCTAATGAATGTGCCCACT
CATTCATTATTCCATTTTCTCACCTTCCCTCTCCCTCCCGCCCCCCGCAC
ACACACATCCATTATCAGGCCGACATCGAGGGCTTCGAGTTCGACCTTTT
CAACGAGATCTTGACCGTGGATGAAGTAGAGCTTCCCGAGCAGATCTCGT
TCGAACTCCACTACAGAACTATAATTAGTGAATTGCCCTGGATGCCCCGG
CAAAAGACCGCAGGGGAAATCGCCTTGTTGGGCACGCGTTTGTACGAGCA
GGGCTATAGAGTGCTGTCTCGCGAGGATAATGTGTACGTACCTGTGTAAT
CGAGAATGAAGGTGGCTACGTTATGATTGTTTTTCCCCTTAAAGAGTTTT
GGTAATGAAAGGATTGTATGGAGTTTGCTTTCTCCATCAACGGAAATGTC
TCCGGCATGCTTTCTCCCACCCCCCTTTCTTTCCCTCCCTGGAAATATCA
AGGACATGTCTAAGTTTGCCATAATGTAATTGCACCTTCCCCACTGCCTT
GTGCACAGGTTGTGTCCGCATTGTACGGAAATCACCATCGCGCGTTTCCG
CTGCCCGAAAGGGCCCCGCAGCCAGACCAAGAAGCTAGCCTTGAGGATGC
AGGAACGTCAGAGAGGCGCGGTGTCCTATTTACAAGAGCAGCAACAGTAA
GGATGATGAGGTGAATGAGACAGGGGCTACAGGATGACGGAAAATTACGA
AAAGGAAGGGACCGGGCTGTCTGATAAAGTGTTTGCGGTGTGAGGGCGAG
ATGCATGTGGCCGGGGGCTGAAGCGTTGGTGGAATATTACGAAAGGGAAG
GGGCCGAAATATCTAATAGAATTTTCTGGTTGGAAGATCACCATCAATAA
ATGAGGGAGGTGCACGGAGTAGCGATGATATCGGGGGTGGGGAGGACGGG
AGAAGGGATGTTGGCGAGTGAGAATTGTTCTTAACAAAGAGCTGGTCTTG
GAAACCATATGGAATAAAACGTTAATTAAGACGTATGTACCTATACTTGA
ATTTTTTACCTACCTTCTGTCTTCCTTATCACGGCTAAGCCGTGGAAAGA
GGGAGCAAAGGGAACAGAGGATTAATCTTGCGTTGAGAAAT

Coding sequence (CDS) from alignment at scaffold_6:460232..462422-

>mRNA_3480 ID=mRNA_3480|Name=jgi.p|Nanoce1779_2|582291|organism=Nannochloropsis oceanica|type=CDS|length=2538bp|location=Sequence derived from alignment at scaffold_6:460232..462422- (Nannochloropsis oceanica)
GTTGTGTCCGCATTGTACGGAAATCACCATCGCGCGTTTCCGCTGCCCGA
AAGGGCCCCGCAGCCAGACCAAGAAGCTAGCCTTGAGGATGCAGGAACGT
CAGAGAGGCGCGGTGTCCTATTTACAAGAGCAGCAACAGTAAGCCGACAT
CGAGGGCTTCGAGTTCGACCTTTTCAACGAGATCTTGACCGTGGATGAAG
TAGAGCTTCCCGAGCAGATCTCGTTCGAACTCCACTACAGAACTATAATT
AGTGAATTGCCCTGGATGCCCCGGCAAAAGACCGCAGGGGAAATCGCCTT
GTTGGGCACGCGTTTGTACGAGCAGGGCTATAGAGTGCTGTCTCGCGAGG
ATAATGTATGGTGGGAAGTTTGTTTGTGGTATTCAAGACATCCCCGACAA
TAAGGATCGGCCTTGCATTATCTACTCCATTGGTATGTAACCTGCAAGAT
GATTTCGGAAGAGTCAGCAACAGTAAGAAGCTTATCGTTATCTTTGACTT
TCTCAGTTTTGAACGGTGGTGTTGTTGGACGAGCTTAAAAGACAAGCAAC
TCGTTCTATCAGTAACACGCCATCGACCCCCCGGTATCTATTTCTCCGAT
TTCCTCTATTTAGGCTCCAATCACGTATGGGACTTCGAGGAAGACGCTTA
CAACTCCACCCGCTGTACTATTCACACCTTTGACTGTACCGTGCAGTCAA
ACTCCATGCCGGAATACATCCGCGATCGAGCCACATTTCACAAAATCTGT
ATGGGCAGTTCCGAAAATAGCAGTGAAGGAAAAATATTTATGAATTTAAA
GGAGGTAATGGATATGCTGGGTCACTCGTACGTGACGTTACTCAAGGTTG
TGTCCGCATTGTACGGAAATCACCATCGCGCGTTTCCGCTGCCCGAAAGG
GCCCCGCAGCCAGACCAAGAAGCTAGCCTTGAGGATGCAGGAACGTCAGA
GAGGCGCGGTGTCCTATTTACAAGAGCAGCAACAGTAAGCCGACATCGAG
GGCTTCGAGTTCGACCTTTTCAACGAGATCTTGACCGTGGATGAAGTAGA
GCTTCCCGAGCAGATCTCGTTCGAACTCCACTACAGAACTATAATTAGTG
AATTGCCCTGGATGCCCCGGCAAAAGACCGCAGGGGAAATCGCCTTGTTG
GGCACGCGTTTGTACGAGCAGGGCTATAGAGTGCTGTCTCGCGAGGATAA
TGTATGGTGGGAAGTTTGTTTGTGGTATTCAAGACATCCCCGACAATAAG
GATCGGCCTTGCATTATCTACTCCATTGGTATGTAACCTGCAAGATGATT
TCGGAAGAGTCAGCAACAGTAAGAAGCTTATCGTTATCTTTGACTTTCTC
AGTTTTGAACGGTGGTGTTGTTGGACGAGCTTAAAAGACAAGCAACTCGT
TCTATCAGTAACACGCCATCGACCCCCCGGTATCTATTTCTCCGATTTCC
TCTATTTAGGCTCCAATCACGTATGGGACTTCGAGGAAGACGCTTACAAC
TCCACCCGCTGTACTATTCACACCTTTGACTGTACCGTGCAGTCAAACTC
CATGCCGGAATACATCCGCGATCGAGCCACATTTCACAAAATCTGTATGG
GCAGTTCCGAAAATAGCAGTGAAGGAAAAATATTTATGAATTTAAAGGAG
GTAATGGATATGCTGGGTCACTCGTACGTGACGTTACTCAAGGTTGTGTC
CGCATTGTACGGAAATCACCATCGCGCGTTTCCGCTGCCCGAAAGGGCCC
CGCAGCCAGACCAAGAAGCTAGCCTTGAGGATGCAGGAACGTCAGAGAGG
CGCGGTGTCCTATTTACAAGAGCAGCAACAGTAAGCCGACATCGAGGGCT
TCGAGTTCGACCTTTTCAACGAGATCTTGACCGTGGATGAAGTAGAGCTT
CCCGAGCAGATCTCGTTCGAACTCCACTACAGAACTATAATTAGTGAATT
GCCCTGGATGCCCCGGCAAAAGACCGCAGGGGAAATCGCCTTGTTGGGCA
CGCGTTTGTACGAGCAGGGCTATAGAGTGCTGTCTCGCGAGGATAATGTA
TGGTGGGAAGTTTGTTTGTGGTATTCAAGACATCCCCGACAATAAGGATC
GGCCTTGCATTATCTACTCCATTGGTATGTAACCTGCAAGATGATTTCGG
AAGAGTCAGCAACAGTAAGAAGCTTATCGTTATCTTTGACTTTCTCAGTT
TTGAACGGTGGTGTTGTTGGACGAGCTTAAAAGACAAGCAACTCGTTCTA
TCAGTAACACGCCATCGACCCCCCGGTATCTATTTCTCCGATTTCCTCTA
TTTAGGCTCCAATCACGTATGGGACTTCGAGGAAGACGCTTACAACTCCA
CCCGCTGTACTATTCACACCTTTGACTGTACCGTGCAGTCAAACTCCATG
CCGGAATACATCCGCGATCGAGCCACATTTCACAAAATCTGTATGGGCAG
TTCCGAAAATAGCAGTGAAGGAAAAATATTTATGAATTTAAAGGAGGTAA
TGGATATGCTGGGTCACTCGTACGTGACGTTACTCAAG

Synonyms

Publications