jgi.p|Nanoce1779_2|627827, mRNA_348 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627827
Unique Name	mRNA_348
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1185
Alignment location	scaffold_3:856868..858391 +

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Properties


Property Name	Value
TranscriptId	627913
Track	FilteredModels2
ProteinId	627827

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:856868..858391 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627827	gene_348	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627827	mRNA_348-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_348	CDS_348	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:856868..858391+
coding sequence from alignment at scaffold_3:856868..858391+

mRNA sequence

>mRNA_348 ID=mRNA_348|Name=jgi.p|Nanoce1779_2|627827|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
ATGAGAGAAAGGCTACTCCTACCAGACGCAGGCCTTTTTCTCGGTGCTGC
TGGTCTGTGTCTTTTAGAGATCGTGCGGTCAAAGGAGGATGTCGATGCGG
CCACTTCGAGTGCGGGGACTGAGATGAGACGACGGATCCACCTCTTGCTC
CTCGTGGCTAATGTGGCAAGATGCATCTGCCTCCTGGCGGAAACACTGCT
GTTCGCGGAATACAGCTGCCCTAGCTCGTGGACCTGTGCTCTGGTCCGCA
CAGTTCCTGATCTCTTCTTCCTTACCACCTACGGCTTGCTCATCCTTTTT
TGGGCCCAGCTCAGTCACACCGCCACTGGAGCCCCTTTCCCTCGGCTAAG
ACCTGCCTTTCTGATTAGTAATGGACTGTTGTATGTAGGTTTTCTGCTGA
TTGTGATCATGGGGGGGAGTCGAGTGTTGAGCGGTGGGCAAGTGCTGCAG
GCACTGTTTGTTCTGTTGGGAGTGTCGTATATACTGTGGACCTTGATTTG
GTTCAAGTACGCCTTTAGATTTTCCAAGATGGCCCTGCCTTATGTGGTGC
GACGACGGTTGATTGCATTGTGCGTCTTGTGTGGGCTGGCGTTTTTCGTG
CACGTGGCATATTATCTGGGAGTGGCGTCGGGGTTGTTGTCCACCTGGGT
AGCTGCCGCTGGTTACCCACCTCAAATAAACGCGGATACCTTCGATGCCC
TTCTCTACCCTCTCTGGGAGCTTCTACCCTCCATCGTCATTTTAGCGGTG
CTGCACAAGCGTAAGTCCGGCAGTGGCATGGCGTCACATCATCTCTCCTC
TGCCTACCCTTATTTAGACAGTGTACCCTACACTAAAATTGGGAGCGGGC
AGCCGGGAAACGGCCAAGGAGGCACAGGAGGTGGTGCTGGTAATGTGTAT
GACAGGGCCAGCCACTCTGCTGCCCTGGCCAGTGCATTTTATAAGTTGAA
TGGGAGCAGTGATGGAAGAGGAGGAGGAGGGAGGGGATTTGGGGCGGGAA
GAAAGGGAGGAAGGCAGCAGCAACAGCAGCATCCGTGGATGAATGTGGTG
GTGAAGGAGGGGAGGGATGCACAGGGAGGAAAGGGGGTATTGGGATTGAT
GGGGATTTATACGCCAATCGAAGCGGCGACCACGCCATCGACGAGCAGTG
AGAGCACGGCCTCAGCATACCAAGGTGCGATCTAA

protein sequence of jgi.p|Nanoce1779_2|627827

>mRNA_348-protein ID=mRNA_348-protein|Name=jgi.p|Nanoce1779_2|627827|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MRERLLLPDAGLFLGAAGLCLLEIVRSKEDVDAATSSAGTEMRRRIHLLL
LVANVARCICLLAETLLFAEYSCPSSWTCALVRTVPDLFFLTTYGLLILF
WAQLSHTATGAPFPRLRPAFLISNGLLYVGFLLIVIMGGSRVLSGGQVLQ
ALFVLLGVSYILWTLIWFKYAFRFSKMALPYVVRRRLIALCVLCGLAFFV
HVAYYLGVASGLLSTWVAAAGYPPQINADTFDALLYPLWELLPSIVILAV
LHKRKSGSGMASHHLSSAYPYLDSVPYTKIGSGQPGNGQGGTGGGAGNVY
DRASHSAALASAFYKLNGSSDGRGGGGRGFGAGRKGGRQQQQQHPWMNVV
VKEGRDAQGGKGVLGLMGIYTPIEAATTPSTSSESTASAYQGAI*

mRNA from alignment at scaffold_3:856868..858391+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_348 ID=mRNA_348|Name=jgi.p|Nanoce1779_2|627827|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp|location=Sequence derived from alignment at scaffold_3:856868..858391+ (Nannochloropsis oceanica)
ATGAGAGAAAGGCTACTCCTACCAGACGCAGGCCTTTTTCTCGGTGCTGC
TGGTCTGTGTCTTTTAGAGATCGTGCGGTCAAAGGAGGATGTCGATGCGG
CCACTTCGAGTGCGGGGACTGAGATGAGACGACGGATCCACCTCTTGCTC
CTCGTGGCTAATGTGGCAAGGTAAGGCGGAAAAAAGGCGAGGATGCGCAG
GGTTGAAGGGATTGTGGAAAGTGCAGACGTGTCGTCGAAGCTGCTGGAGA
GCGGTGGGAGCAGCGTTGTATATGTCCTTGTAAAACAGAGTGATGCCTCC
TGAGTGGTGTTTGGGGCTTTGGCTTGCTTGTGTTTGTGTGTGCTCTATAA
TGCCCTCGTTCTTATTGTAATTCCGTCACGTTGAAATCATCATGGCTGAT
CTGGAATGTCGCGCAATTTGCCCTGCTTCTTTCGTGGCTTTTGAACATGC
TCACCTACCTCCCCCTCCCTTCCCCCCCGCGACCACCCACTCCCCTCACC
CCCAACCAGATGCATCTGCCTCCTGGCGGAAACACTGCTGTTCGCGGAAT
ACAGCTGCCCTAGCTCGTGGACCTGTGCTCTGGTCCGCACAGTTCCTGAT
CTCTTCTTCCTTACCACCTACGGCTTGCTCATCCTTTTTTGGGCCCAGCT
CAGTCACACCGCCACTGGAGCCCCTTTCCCTCGGCTAAGACCTGCCTTTC
TGATTAGTAATGGACTGTTGTATGTAGGTTTTCTGCTGATTGTGATCATG
GGGGGGAGTCGAGTGTTGAGCGGTGGGCAAGTGCTGCAGGCACTGTTTGT
TCTGTTGGGAGTGTCGTATATACTGTGGACCTTGATTTGGTTCAAGTACG
CCTTTAGATTTTCCAAGATGGCCCTGCCTTATGTGGTGCGACGACGGTTG
ATTGCATTGTGCGTCTTGTGTGGGCTGGCGTTTTTCGTGCACGTGGCATA
TTATCTGGGAGTGGCGTCGGGGTTGTTGTCCACCTGGGTAGCTGCCGCTG
GTTACCCACCTCAAATAAACGCGGATACCTTCGATGCCCTTCTCTACCCT
CTCTGGGAGCTTCTACCCTCCATCGTCATTTTAGCGGTGCTGCACAAGCG
TAAGTCCGGCAGTGGCATGGCGTCACATCATCTCTCCTCTGCCTACCCTT
ATTTAGACAGTGTACCCTACACTAAAATTGGGAGCGGGCAGCCGGGAAAC
GGCCAAGGAGGCACAGGAGGTGGTGCTGGTAATGTGTATGACAGGGCCAG
CCACTCTGCTGCCCTGGCCAGTGCATTTTATAAGTTGAATGGGAGCAGTG
ATGGAAGAGGAGGAGGAGGGAGGGGATTTGGGGCGGGAAGAAAGGGAGGA
AGGCAGCAGCAACAGCAGCATCCGTGGATGAATGTGGTGGTGAAGGAGGG
GAGGGATGCACAGGGAGGAAAGGGGGTATTGGGATTGATGGGGATTTATA
CGCCAATCGAAGCGGCGACCACGCCATCGACGAGCAGTGAGAGCACGGCC
TCAGCATACCAAGGTGCGATCTAA

Coding sequence (CDS) from alignment at scaffold_3:856868..858391+

>mRNA_348 ID=mRNA_348|Name=jgi.p|Nanoce1779_2|627827|organism=Nannochloropsis oceanica|type=CDS|length=2370bp|location=Sequence derived from alignment at scaffold_3:856868..858391+ (Nannochloropsis oceanica)
ATGAGAGAAAGGCTACTCCTACCAGACGCAGGCCTTTTTCTCGGTGCTGC
TGGTCTGTGTCTTTTAGAGATCGTGCGGTCAAAGGAGGATGTCGATGCGG
CCACTTCGAGTGCGGGGACTGAGATGAGACGACGGATCCACCTCTTGCTC
CTCGTGGCTAATGTGGCAAGATGCATCTGCCTCCTGGCGGAAACACTGCT
GTTCGCGGAATACAGCTGCCCTAGCTCGTGGACCTGTGCTCTGGTCCGCA
CAGTTCCTGATCTCTTCTTCCTTACCACCTACGGCTTGCTCATCCTTTTT
TGGGCCCAGCTCAGTCACACCGCCACTGGAGCCCCTTTCCCTCGGCTAAG
ACCTGCCTTTCTGATTAGTAATGGACTGTTGTATGTAGGTTTTCTGCTGA
TTGTGATCATGGGGGGGAGTCGAGTGTTGAGCGGTGGGCAAGTGCTGCAG
GCACTGTTTGTTCTGTTGGGAGTGTCGTATATACTGTGGACCTTGATTTG
GTTCAAGTACGCCTTTAGATTTTCCAAGATGGCCCTGCCTTATGTGGTGC
GACGACGGTTGATTGCATTGTGCGTCTTGTGTGGGCTGGCGTTTTTCGTG
CACGTGGCATATTATCTGGGAGTGGCGTCGGGGTTGTTGTCCACCTGGGT
AGCTGCCGCTGGTTACCCACCTCAAATAAACGCGGATACCTTCGATGCCC
TTCTCTACCCTCTCTGGGAGCTTCTACCCTCCATCGTCATTTTAGCGGTG
CTGCACAAGCGTAAGTCCGGCAGTGGCATGGCGTCACATCATCTCTCCTC
TGCCTACCCTTATTTAGACAGTGTACCCTACACTAAAATTGGGAGCGGGC
AGCCGGGAAACGGCCAAGGAGGCACAGGAGGTGGTGCTGGTAATGTGTAT
GACAGGGCCAGCCACTCTGCTGCCCTGGCCAGTGCATTTTATAAGTTGAA
TGGGAGCAGTGATGGAAGAGGAGGAGGAGGGAGGGGATTTGGGGCGGGAA
GAAAGGGAGGAAGGCAGCAGCAACAGCAGCATCCGTGGATGAATGTGGTG
GTGAAGGAGGGGAGGGATGCACAGGGAGGAAAGGGGGTATTGGGATTGAT
GGGGATTTATACGCCAATCGAAGCGGCGACCACGCCATCGACGAGCAGTG
AGAGCACGGCCTCAGCATACCAAGGTGCGATCTAAATGAGAGAAAGGCTA
CTCCTACCAGACGCAGGCCTTTTTCTCGGTGCTGCTGGTCTGTGTCTTTT
AGAGATCGTGCGGTCAAAGGAGGATGTCGATGCGGCCACTTCGAGTGCGG
GGACTGAGATGAGACGACGGATCCACCTCTTGCTCCTCGTGGCTAATGTG
GCAAGATGCATCTGCCTCCTGGCGGAAACACTGCTGTTCGCGGAATACAG
CTGCCCTAGCTCGTGGACCTGTGCTCTGGTCCGCACAGTTCCTGATCTCT
TCTTCCTTACCACCTACGGCTTGCTCATCCTTTTTTGGGCCCAGCTCAGT
CACACCGCCACTGGAGCCCCTTTCCCTCGGCTAAGACCTGCCTTTCTGAT
TAGTAATGGACTGTTGTATGTAGGTTTTCTGCTGATTGTGATCATGGGGG
GGAGTCGAGTGTTGAGCGGTGGGCAAGTGCTGCAGGCACTGTTTGTTCTG
TTGGGAGTGTCGTATATACTGTGGACCTTGATTTGGTTCAAGTACGCCTT
TAGATTTTCCAAGATGGCCCTGCCTTATGTGGTGCGACGACGGTTGATTG
CATTGTGCGTCTTGTGTGGGCTGGCGTTTTTCGTGCACGTGGCATATTAT
CTGGGAGTGGCGTCGGGGTTGTTGTCCACCTGGGTAGCTGCCGCTGGTTA
CCCACCTCAAATAAACGCGGATACCTTCGATGCCCTTCTCTACCCTCTCT
GGGAGCTTCTACCCTCCATCGTCATTTTAGCGGTGCTGCACAAGCGTAAG
TCCGGCAGTGGCATGGCGTCACATCATCTCTCCTCTGCCTACCCTTATTT
AGACAGTGTACCCTACACTAAAATTGGGAGCGGGCAGCCGGGAAACGGCC
AAGGAGGCACAGGAGGTGGTGCTGGTAATGTGTATGACAGGGCCAGCCAC
TCTGCTGCCCTGGCCAGTGCATTTTATAAGTTGAATGGGAGCAGTGATGG
AAGAGGAGGAGGAGGGAGGGGATTTGGGGCGGGAAGAAAGGGAGGAAGGC
AGCAGCAACAGCAGCATCCGTGGATGAATGTGGTGGTGAAGGAGGGGAGG
GATGCACAGGGAGGAAAGGGGGTATTGGGATTGATGGGGATTTATACGCC
AATCGAAGCGGCGACCACGCCATCGACGAGCAGTGAGAGCACGGCCTCAG
CATACCAAGGTGCGATCTAA

Synonyms

Publications