jgi.p|Nanoce1779_2|582286, mRNA_3478 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582286
Unique Name	mRNA_3478
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2366
Alignment location	scaffold_6:455767..458132 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582372
Track	FilteredModels2
ProteinId	582286

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:455767..458132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582286	gene_3478	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582286	mRNA_3478-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3478	CDS_3478	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:455767..458132+
coding sequence from alignment at scaffold_6:455767..458132+

mRNA sequence

>mRNA_3478 ID=mRNA_3478|Name=jgi.p|Nanoce1779_2|582286|organism=Nannochloropsis oceanica|type=mRNA|length=2366bp
ACAGCCCACTCATAGAACTCCAAGACCATGCCCCTCTTCACCTTGCCGCA
GCGGGTTATAGATATGTGGCTGAATAATAAGCACGACCGGGTGGTGCTGG
TAGGAGCTGCCTTGTCGACGGCAGGCTTGCTGGCCTCGGCTTTGGCCTCG
TACCGCTTGCTCCACGACTGGAACCGTCACCGTTACCTGCATGAACTGGA
TCTGCACGAAGAGGAAGCCAGCAGTCAAAGAGCGCGCATCGGGGTGGCTG
TAGACATTGGCAGCTCTTCCGTGCGGTGCAGCGCCTACGTGTTACGACGG
GATGGCGGGGTGGCTTTCATTCCTGGCACCTTGGCTCAAGTGAAGCGGGA
CGCCATGCGCCCCGACGGCACAGTGGACGCAATATGCATCCTTCAAGACG
TCGAAAGCGTGCTGGACGCATGTTTATGCCTCGTACGGGGCAAGGGGCTG
GGGCCGTACGTGGCGGTGGTGGGGTTTGCAGCTTTTGTCATGAACTTGGT
GGGGGTGGACCGAGAGGGCTCGCCCATCACTCCGGTCTTGACTTATGCGG
ACCGGCATCCGACTACAGGGATGTACGTGGAGCGGTTAAGGAAGTTGATT
GCCACCAAAGCGCAGCAGCAACAGCAGCAACAAGAGCAAGGGCCACAACA
GCAGCAGGGGCAATCGCTGAACATTGCAACAGCGGGTATGACAAGTCGAT
ATTATCAGTACGTCAGGGAATCTAGCAGCAAGGCGACGAAAGGCGTGACA
AAGACATCCCGCCCAATTGCACCCGGCAGCGGCGATGAGCCGAGCAGTGG
TAGCAGTAACAGCAGTGGGACAGAGAACGACAGTGGAATCTACAACATGA
CCGGCGCACCCATCCATACGGCATATGCGGCCCCGCAGCTCTGTCGTTTG
GCGGAGGAAGAACCTGATGTCATGATCCGGGTGTTCAAATGGCAATCCTT
GGTGAGTTTCTGCTTAGCTCGGTGGACGGGTGCTACCCACCTACCCGTCA
GTTACTCGGAAGCCTCCTGGACGGGTCTGCTTGATTTTCGTAGGCTGGAG
TGGTGTGCGGAGCTCACGTCGATGCTGCCCATCCAGCCACTCACTCTTCC
AAGCCTGGCTGATTACCAGGACGGTCCGCACGGTCGAAAGCTGACTTCTG
TTTATGCTCGCCGCTGGCCCGAATTGACCCAAGCTCGCTTTTTCCTGGGA
GTGGGTGATGGGGCTTGCGCGAACATAGGTTCGGGCTGCCGAGATGCAGC
GCATCTGGCTGTCACCATTGGCACGAGCGCTGCTGCTCGTGTTGTAATCT
CGGAAAATGGTGCTGGCTCTGCGGAAAGGCTAAGCGTCCTCCCTGTCGTT
CCTCCGGGGTTGTGGTGTTATCGGATTGACAAGAGCCGGTTGTTGTTAGG
CGGGGCTCTGACGGATGGCGGTTCGTTGATCAAATGGATGATGGAAACTT
TCCGCGTTGGTACCACCACAGCCGCTGCTGAAGCAGAAGCAAGGCAGTGC
CAGGCAGGAGGGCATGGCCTGATGGTGCTGCCTTTTTTAAGCGGAGAGCG
GTCGCCGGGGTGGAATCCGGATGCGAAGGCGACGATCACGGGCTTGACTA
AACATACAACGGGCGCTGATATATATCGGGCGGGTTTGGAAAGTGTGGCT
TTGCGCTTGGCTGCGATTGTAAGCTTGATGGCCCCGCATTTGAGGGATGG
TGTTGTGGTGGGTGCGAGTGGGACGGCGCTTGAGTGCTCGCCTTTATGGC
GGCAGATTTTAGCGGATGTGCTAGGAATGGAAGTGAGACTAGGAAAACAA
AGCGAGGCAACTTCGTTGGGGGCAGCGATCTTGATGAGCGAAGGCTTCTT
TGGAAGACAGGAGGAGGGGGGAATGGAGGAAGGGGATGAGTGGGAGGAAG
AGGCGTTGCATCGTCATGTGCCGGCGGAAAAAGCGCACACGGTTTACATG
GAGATGTTGAAGCGACAGGATGAACTGTATGAAGCGATGTACCCGTCGGG
TCAGAGGTGCCGCGGGATAGATGATCGCGATCGGGACCAAATGTTGAATG
TGTACCAATATGTCTGCGGAAAAGTGTAGATTTTTGTGTATGTGTAAGCT
TTAGATCGAATGTCTCCTTCTTTACAAGAGAAATAGACGAACAAAAAAAT
GCAACAGACTACCGTTGAGCATGCTTCGCTTACTTGTAAAAAATATGCTT
TGCTGACGCATTCTCTGATCTACTTCTTTTTCAGATTATGCTCTAGACTT
GACGCGAGCATTTACGTTTTGTAAGTTTTCGGGACCTCTTTACAAGATTG
AGAAGGGGGGGAATATTGGATTTGGAATGGATTTGTTCACTCGTCGTCAT
CGTCGTCATCTTCCTC

protein sequence of jgi.p|Nanoce1779_2|582286

>mRNA_3478-protein ID=mRNA_3478-protein|Name=jgi.p|Nanoce1779_2|582286|organism=Nannochloropsis oceanica|type=polypeptide|length=684bp
MPLFTLPQRVIDMWLNNKHDRVVLVGAALSTAGLLASALASYRLLHDWNR
HRYLHELDLHEEEASSQRARIGVAVDIGSSSVRCSAYVLRRDGGVAFIPG
TLAQVKRDAMRPDGTVDAICILQDVESVLDACLCLVRGKGLGPYVAVVGF
AAFVMNLVGVDREGSPITPVLTYADRHPTTGMYVERLRKLIATKAQQQQQ
QQEQGPQQQQGQSLNIATAGMTSRYYQYVRESSSKATKGVTKTSRPIAPG
SGDEPSSGSSNSSGTENDSGIYNMTGAPIHTAYAAPQLCRLAEEEPDVMI
RVFKWQSLVSFCLARWTGATHLPVSYSEASWTGLLDFRRLEWCAELTSML
PIQPLTLPSLADYQDGPHGRKLTSVYARRWPELTQARFFLGVGDGACANI
GSGCRDAAHLAVTIGTSAAARVVISENGAGSAERLSVLPVVPPGLWCYRI
DKSRLLLGGALTDGGSLIKWMMETFRVGTTTAAAEAEARQCQAGGHGLMV
LPFLSGERSPGWNPDAKATITGLTKHTTGADIYRAGLESVALRLAAIVSL
MAPHLRDGVVVGASGTALECSPLWRQILADVLGMEVRLGKQSEATSLGAA
ILMSEGFFGRQEEGGMEEGDEWEEEALHRHVPAEKAHTVYMEMLKRQDEL
YEAMYPSGQRCRGIDDRDRDQMLNVYQYVCGKV*

mRNA from alignment at scaffold_6:455767..458132+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3478 ID=mRNA_3478|Name=jgi.p|Nanoce1779_2|582286|organism=Nannochloropsis oceanica|type=mRNA|length=2366bp|location=Sequence derived from alignment at scaffold_6:455767..458132+ (Nannochloropsis oceanica)
ACAGCCCACTCATAGAACTCCAAGACCATGCCCCTCTTCACCTTGCCGCA
GCGGGTTATAGATATGTGGCTGAATAATAAGCACGACCGGGTGGTGCTGG
TAGGAGCTGCCTTGTCGACGGCAGGCTTGCTGGCCTCGGCTTTGGCCTCG
TACCGCTTGCTCCACGACTGGAACCGTCACCGTTACCTGCATGAACTGGA
TCTGCACGAAGAGGAAGCCAGCAGTCAAAGAGCGCGCATCGGGGTGGCTG
TAGACATTGGCAGCTCTTCCGTGCGGTGCAGCGCCTACGTGTTACGACGG
GATGGCGGGGTGGCTTTCATTCCTGGCACCTTGGCTCAAGTGAAGCGGGA
CGCCATGCGCCCCGACGGCACAGTGGACGCAATATGCATCCTTCAAGACG
TCGAAAGCGTGCTGGACGCATGTTTATGCCTCGTACGGGGCAAGGGGCTG
GGGCCGTACGTGGCGGTGGTGGGGTTTGCAGCTTTTGTCATGAACTTGGT
GGGGGTGGACCGAGAGGGCTCGCCCATCACTCCGGTCTTGACTTATGCGG
ACCGGCATCCGACTACAGGGATGTACGTGGAGCGGTTAAGGAAGTTGATT
GCCACCAAAGCGCAGCAGCAACAGCAGCAACAAGAGCAAGGGCCACAACA
GCAGCAGGGGCAATCGCTGAACATTGCAACAGCGGGTATGACAAGTCGAT
ATTATCAGTACGTCAGGGAATCTAGCAGCAAGGCGACGAAAGGCGTGACA
AAGACATCCCGCCCAATTGCACCCGGCAGCGGCGATGAGCCGAGCAGTGG
TAGCAGTAACAGCAGTGGGACAGAGAACGACAGTGGAATCTACAACATGA
CCGGCGCACCCATCCATACGGCATATGCGGCCCCGCAGCTCTGTCGTTTG
GCGGAGGAAGAACCTGATGTCATGATCCGGGTGTTCAAATGGCAATCCTT
GGTGAGTTTCTGCTTAGCTCGGTGGACGGGTGCTACCCACCTACCCGTCA
GTTACTCGGAAGCCTCCTGGACGGGTCTGCTTGATTTTCGTAGGCTGGAG
TGGTGTGCGGAGCTCACGTCGATGCTGCCCATCCAGCCACTCACTCTTCC
AAGCCTGGCTGATTACCAGGACGGTCCGCACGGTCGAAAGCTGACTTCTG
TTTATGCTCGCCGCTGGCCCGAATTGACCCAAGCTCGCTTTTTCCTGGGA
GTGGGTGATGGGGCTTGCGCGAACATAGGTTCGGGCTGCCGAGATGCAGC
GCATCTGGCTGTCACCATTGGCACGAGCGCTGCTGCTCGTGTTGTAATCT
CGGAAAATGGTGCTGGCTCTGCGGAAAGGCTAAGCGTCCTCCCTGTCGTT
CCTCCGGGGTTGTGGTGTTATCGGATTGACAAGAGCCGGTTGTTGTTAGG
CGGGGCTCTGACGGATGGCGGTTCGTTGATCAAATGGATGATGGAAACTT
TCCGCGTTGGTACCACCACAGCCGCTGCTGAAGCAGAAGCAAGGCAGTGC
CAGGCAGGAGGGCATGGCCTGATGGTGCTGCCTTTTTTAAGCGGAGAGCG
GTCGCCGGGGTGGAATCCGGATGCGAAGGCGACGATCACGGGCTTGACTA
AACATACAACGGGCGCTGATATATATCGGGCGGGTTTGGAAAGTGTGGCT
TTGCGCTTGGCTGCGATTGTAAGCTTGATGGCCCCGCATTTGAGGGATGG
TGTTGTGGTGGGTGCGAGTGGGACGGCGCTTGAGTGCTCGCCTTTATGGC
GGCAGATTTTAGCGGATGTGCTAGGAATGGAAGTGAGACTAGGAAAACAA
AGCGAGGCAACTTCGTTGGGGGCAGCGATCTTGATGAGCGAAGGCTTCTT
TGGAAGACAGGAGGAGGGGGGAATGGAGGAAGGGGATGAGTGGGAGGAAG
AGGCGTTGCATCGTCATGTGCCGGCGGAAAAAGCGCACACGGTTTACATG
GAGATGTTGAAGCGACAGGATGAACTGTATGAAGCGATGTACCCGTCGGG
TCAGAGGTGCCGCGGGATAGATGATCGCGATCGGGACCAAATGTTGAATG
TGTACCAATATGTCTGCGGAAAAGTGTAGATTTTTGTGTATGTGTAAGCT
TTAGATCGAATGTCTCCTTCTTTACAAGAGAAATAGACGAACAAAAAAAT
GCAACAGACTACCGTTGAGCATGCTTCGCTTACTTGTAAAAAATATGCTT
TGCTGACGCATTCTCTGATCTACTTCTTTTTCAGATTATGCTCTAGACTT
GACGCGAGCATTTACGTTTTGTAAGTTTTCGGGACCTCTTTACAAGATTG
AGAAGGGGGGGAATATTGGATTTGGAATGGATTTGTTCACTCGTCGTCAT
CGTCGTCATCTTCCTC

Coding sequence (CDS) from alignment at scaffold_6:455767..458132+

>mRNA_3478 ID=mRNA_3478|Name=jgi.p|Nanoce1779_2|582286|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_6:455767..458132+ (Nannochloropsis oceanica)
ATGCCCCTCTTCACCTTGCCGCAGCGGGTTATAGATATGTGGCTGAATAA
TAAGCACGACCGGGTGGTGCTGGTAGGAGCTGCCTTGTCGACGGCAGGCT
TGCTGGCCTCGGCTTTGGCCTCGTACCGCTTGCTCCACGACTGGAACCGT
CACCGTTACCTGCATGAACTGGATCTGCACGAAGAGGAAGCCAGCAGTCA
AAGAGCGCGCATCGGGGTGGCTGTAGACATTGGCAGCTCTTCCGTGCGGT
GCAGCGCCTACGTGTTACGACGGGATGGCGGGGTGGCTTTCATTCCTGGC
ACCTTGGCTCAAGTGAAGCGGGACGCCATGCGCCCCGACGGCACAGTGGA
CGCAATATGCATCCTTCAAGACGTCGAAAGCGTGCTGGACGCATGTTTAT
GCCTCGTACGGGGCAAGGGGCTGGGGCCGTACGTGGCGGTGGTGGGGTTT
GCAGCTTTTGTCATGAACTTGGTGGGGGTGGACCGAGAGGGCTCGCCCAT
CACTCCGGTCTTGACTTATGCGGACCGGCATCCGACTACAGGGATGTACG
TGGAGCGGTTAAGGAAGTTGATTGCCACCAAAGCGCAGCAGCAACAGCAG
CAACAAGAGCAAGGGCCACAACAGCAGCAGGGGCAATCGCTGAACATTGC
AACAGCGGGTATGACAAGTCGATATTATCAGTACGTCAGGGAATCTAGCA
GCAAGGCGACGAAAGGCGTGACAAAGACATCCCGCCCAATTGCACCCGGC
AGCGGCGATGAGCCGAGCAGTGGTAGCAGTAACAGCAGTGGGACAGAGAA
CGACAGTGGAATCTACAACATGACCGGCGCACCCATCCATACGGCATATG
CGGCCCCGCAGCTCTGTCGTTTGGCGGAGGAAGAACCTGATGTCATGATC
CGGGTGTTCAAATGGCAATCCTTGGTGAGTTTCTGCTTAGCTCGGTGGAC
GGGTGCTACCCACCTACCCGTCAGTTACTCGGAAGCCTCCTGGACGGGTC
TGCTTGATTTTCGTAGGCTGGAGTGGTGTGCGGAGCTCACGTCGATGCTG
CCCATCCAGCCACTCACTCTTCCAAGCCTGGCTGATTACCAGGACGGTCC
GCACGGTCGAAAGCTGACTTCTGTTTATGCTCGCCGCTGGCCCGAATTGA
CCCAAGCTCGCTTTTTCCTGGGAGTGGGTGATGGGGCTTGCGCGAACATA
GGTTCGGGCTGCCGAGATGCAGCGCATCTGGCTGTCACCATTGGCACGAG
CGCTGCTGCTCGTGTTGTAATCTCGGAAAATGGTGCTGGCTCTGCGGAAA
GGCTAAGCGTCCTCCCTGTCGTTCCTCCGGGGTTGTGGTGTTATCGGATT
GACAAGAGCCGGTTGTTGTTAGGCGGGGCTCTGACGGATGGCGGTTCGTT
GATCAAATGGATGATGGAAACTTTCCGCGTTGGTACCACCACAGCCGCTG
CTGAAGCAGAAGCAAGGCAGTGCCAGGCAGGAGGGCATGGCCTGATGGTG
CTGCCTTTTTTAAGCGGAGAGCGGTCGCCGGGGTGGAATCCGGATGCGAA
GGCGACGATCACGGGCTTGACTAAACATACAACGGGCGCTGATATATATC
GGGCGGGTTTGGAAAGTGTGGCTTTGCGCTTGGCTGCGATTGTAAGCTTG
ATGGCCCCGCATTTGAGGGATGGTGTTGTGGTGGGTGCGAGTGGGACGGC
GCTTGAGTGCTCGCCTTTATGGCGGCAGATTTTAGCGGATGTGCTAGGAA
TGGAAGTGAGACTAGGAAAACAAAGCGAGGCAACTTCGTTGGGGGCAGCG
ATCTTGATGAGCGAAGGCTTCTTTGGAAGACAGGAGGAGGGGGGAATGGA
GGAAGGGGATGAGTGGGAGGAAGAGGCGTTGCATCGTCATGTGCCGGCGG
AAAAAGCGCACACGGTTTACATGGAGATGTTGAAGCGACAGGATGAACTG
TATGAAGCGATGTACCCGTCGGGTCAGAGGTGCCGCGGGATAGATGATCG
CGATCGGGACCAAATGTTGAATGTGTACCAATATGTCTGCGGAAAAGTGT
AG

Synonyms

Publications