jgi.p|Nanoce1779_2|564400, mRNA_3472 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|564400
Unique Name	mRNA_3472
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1830
Alignment location	scaffold_6:434069..436059 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	564486
Track	FilteredModels2
ProteinId	564400

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:434069..436059 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564400	gene_3472	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564400	mRNA_3472-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3472	CDS_3472	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:434069..436059+
coding sequence from alignment at scaffold_6:434069..436059+

mRNA sequence

>mRNA_3472 ID=mRNA_3472|Name=jgi.p|Nanoce1779_2|564400|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp
ATGGGCACCAAGAAGGGATTACAACCATCGTCTTCCCGGCATGCACGTCA
GGCGAATGGGAAAGATAGTGGTGTGGTCTCGGTGGGCATCCAACACTCAT
TAGAATGGAACGTGGAGGCATATCAGGTGCCGAGTGGTAAAAATGGCAAG
TTTCGCTGCATTCTGAACAATATTTCTGGGAAGACAGTGAGCGGAGAATT
GACAGCGATTATGGGGCCGTCAGGTTGTGGTAAGACGACGCTGTTGGAGT
GTATCTCGTTGCGGAACCGGCGGTTTCATGGGAGCGTCCATTTTGACGGA
AAGGCCCCAGGGGGGGATGCTTTCACTGTGTCAGTACTTGTGCATCAAAA
GGAGCTGTTGTTTGGCTTCATGACCCCGAGGGAGTATCTCATTTTTCACG
CCTTGGCACGGATGGAGCGCACACATACCAGGGCCGAGATCGATACAAGG
ATTGAGGAGGTATTGCTGGACATGAAGTTAGACAAATGTGCTGATACCTT
GGTGGGTGGCACGGATCCTTTTTTCCAGAAAAAAGGTCTATCGGGCGGAG
AGAGGAAGCGGCTGGCGATTGCGTATGAGATGCTGTTGGCACCGAGTATG
ATTTTTTTGGACGAGCCATCTTCAGGCTTGGATTCGGTCATGTCCGAGTC
GATATTCCAATCTCTCAAGGATCTCGCCGACGGCGGTCGCGTCGTCATGG
CATCTGTTCATTGCCCCTCTTCCGAAGCCTGCCAACTCTTTAGCCACCTC
ATGCTTCTGACATGCGACGGTCGCCTAGCCTACCACGGCCCAACCTTGCA
GGGGATCGAGTACTTCTCCTCCTTGACGTACTTGTGCCCCCAGCACTACA
ATCCGGCAGATTTTTACCTGAAGCTTATCTCGTTCACCCCCGGGGGAGAA
GTCGAAGCAGAGGGGGCAAGGATGAATTTGTTGAGTGCCTCCTTTCAGAA
GTCCGCGATGTGTGTAAGCAAGCCGTTGGCGGTGGACAACAAGCATAAGG
CGTTGGGAGGGGTGCGTGGGGTTAAAGCCAGTACCTGGATCTTGTTAAAG
TTGAATTTTTGGAGGGCAAGCCTGAGGTTGCGGAGGGACAGGACGTTTGT
GGTGCTTTGGGGTATGATTAGTGTGATCGTGGGATTCCTTTTGGGGATAA
TCTACTTGCAACAGGCGCCCAATTCGTGGCGGAACCTGTTGGGGCTGCTT
TTCTCGCTGGTGGTGGCAGACATCTTCATGGGTTCTTTGGGGGTGATCAT
GCGATTTCCGTCGGAATGGGCAATTATTGTGAGGGAGTGTTACAGTGGTG
TCAATGCTGTGGGACCGTACTTGTTCGCGTCGTTCTGGGGGATCTTACCG
ATGGCCTACGGGCCGTTTTTGCTCGTTACGGTTATGTACTGGATGACAGG
GATGGATGCTGATTTTGTGAGGTACTTGAGGTTTGCGGGGATTTATTTGA
GTTATGACATTGCGTGTTTGGGGCTTGGCCAGTTCGTGAGTAGCTTGAGT
GGGAACCCGATGATTGGGATGACGATTTTGCCGGCGTTTGTGGCGCCGAT
GATCATGTTTTCGGGGGTGTTGTATCAAAAGAGCACGGTGCCTGCATGGT
TGGGGTGGATGCACCATGTGAGCTTGGTGAACTATTCGTTTTCGGCCTTG
ATGGCGGAGCAGATTCACATTTTGCCGGGAAACCAAGCAGATATTTTGGC
GGCATTTATTGATTTGAATGAGAATTCTGCCGGGATCAATGTTGTGTATC
TGTGGGTGATGAGTGGGGCGTTGATGATCCTGACATATTTTGCCTTGAGT
CTGCGTTTGCGGAATGCGACAGCGAGTTAG

protein sequence of jgi.p|Nanoce1779_2|564400

>mRNA_3472-protein ID=mRNA_3472-protein|Name=jgi.p|Nanoce1779_2|564400|organism=Nannochloropsis oceanica|type=polypeptide|length=610bp
MGTKKGLQPSSSRHARQANGKDSGVVSVGIQHSLEWNVEAYQVPSGKNGK
FRCILNNISGKTVSGELTAIMGPSGCGKTTLLECISLRNRRFHGSVHFDG
KAPGGDAFTVSVLVHQKELLFGFMTPREYLIFHALARMERTHTRAEIDTR
IEEVLLDMKLDKCADTLVGGTDPFFQKKGLSGGERKRLAIAYEMLLAPSM
IFLDEPSSGLDSVMSESIFQSLKDLADGGRVVMASVHCPSSEACQLFSHL
MLLTCDGRLAYHGPTLQGIEYFSSLTYLCPQHYNPADFYLKLISFTPGGE
VEAEGARMNLLSASFQKSAMCVSKPLAVDNKHKALGGVRGVKASTWILLK
LNFWRASLRLRRDRTFVVLWGMISVIVGFLLGIIYLQQAPNSWRNLLGLL
FSLVVADIFMGSLGVIMRFPSEWAIIVRECYSGVNAVGPYLFASFWGILP
MAYGPFLLVTVMYWMTGMDADFVRYLRFAGIYLSYDIACLGLGQFVSSLS
GNPMIGMTILPAFVAPMIMFSGVLYQKSTVPAWLGWMHHVSLVNYSFSAL
MAEQIHILPGNQADILAAFIDLNENSAGINVVYLWVMSGALMILTYFALS
LRLRNATAS*

mRNA from alignment at scaffold_6:434069..436059+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3472 ID=mRNA_3472|Name=jgi.p|Nanoce1779_2|564400|organism=Nannochloropsis oceanica|type=mRNA|length=1991bp|location=Sequence derived from alignment at scaffold_6:434069..436059+ (Nannochloropsis oceanica)
ATGGGCACCAAGAAGGGATTACAACCATCGTCTTCCCGGCATGCACGTCA
GGCGAATGGGAAAGATAGTGGTGTGGTCTCGGTGGGCATCCAACACTCAT
TAGAATGGAACGTGGAGGCATATCAGGTGCCGAGTGGTAAAAATGGCAAG
TTTCGCTGCATTCTGAACAATATTTCTGGGAAGACAGTGAGCGGAGAATT
GACAGCGATTATGGGGCCGTCAGGTTGTGGTAAGACGACGCTGTTGGAGT
GTATCTCGTTGCGGAACCGGCGGTTTCATGGGAGCGTCCATTTTGACGGA
AAGGCCCCAGGGGGGGATGCTTTCACTGTGTCAGTACTTGTGCATCAAAA
GGAGCTGTTGTTTGGCTTCATGACCCCGAGGGAGTATCTCATTTTTCACG
CCTTGGCACGGATGGAGCGCACACATACCAGGGCCGAGATCGATACAAGG
ATTGAGGAGGTATTGCTGGACATGAAGTTAGACAAATGTGCTGATACCTT
GGTGGGTGGCACGGATCCTTTTTTCCAGAAAAAAGGTCTATCGGGCGGAG
AGAGGAAGCGGCTGGCGATTGCGTATGAGATGCTGTTGGCACCGAGTATG
ATTTTTTTGGACGAGCCATCTTCAGGCTTGGATTCGGTCATGTCCGAGTC
GGTGAGTGTCTTTTCGGGAAAGGAACGGAGAGAAAAATGAAGGGAGAGGG
AGCGAGGGATAGCTGAGAATCGAAAATTGTTGCTGGCATCAGATCTGATT
TCATTTTCCCCTTCCTTTCTCTTCCCTTTTTCCCATCCCACCCACCCCAT
TCCCAAACAAAGATATTCCAATCTCTCAAGGATCTCGCCGACGGCGGTCG
CGTCGTCATGGCATCTGTTCATTGCCCCTCTTCCGAAGCCTGCCAACTCT
TTAGCCACCTCATGCTTCTGACATGCGACGGTCGCCTAGCCTACCACGGC
CCAACCTTGCAGGGGATCGAGTACTTCTCCTCCTTGACGTACTTGTGCCC
CCAGCACTACAATCCGGCAGATTTTTACCTGAAGCTTATCTCGTTCACCC
CCGGGGGAGAAGTCGAAGCAGAGGGGGCAAGGATGAATTTGTTGAGTGCC
TCCTTTCAGAAGTCCGCGATGTGTGTAAGCAAGCCGTTGGCGGTGGACAA
CAAGCATAAGGCGTTGGGAGGGGTGCGTGGGGTTAAAGCCAGTACCTGGA
TCTTGTTAAAGTTGAATTTTTGGAGGGCAAGCCTGAGGTTGCGGAGGGAC
AGGACGTTTGTGGTGCTTTGGGGTATGATTAGTGTGATCGTGGGATTCCT
TTTGGGGATAATCTACTTGCAACAGGCGCCCAATTCGTGGCGGAACCTGT
TGGGGCTGCTTTTCTCGCTGGTGGTGGCAGACATCTTCATGGGTTCTTTG
GGGGTGATCATGCGATTTCCGTCGGAATGGGCAATTATTGTGAGGGAGTG
TTACAGTGGTGTCAATGCTGTGGGACCGTACTTGTTCGCGTCGTTCTGGG
GGATCTTACCGATGGCCTACGGGCCGTTTTTGCTCGTTACGGTTATGTAC
TGGATGACAGGGATGGATGCTGATTTTGTGAGGTACTTGAGGTTTGCGGG
GATTTATTTGAGTTATGACATTGCGTGTTTGGGGCTTGGCCAGTTCGTGA
GTAGCTTGAGTGGGAACCCGATGATTGGGATGACGATTTTGCCGGCGTTT
GTGGCGCCGATGATCATGTTTTCGGGGGTGTTGTATCAAAAGAGCACGGT
GCCTGCATGGTTGGGGTGGATGCACCATGTGAGCTTGGTGAACTATTCGT
TTTCGGCCTTGATGGCGGAGCAGATTCACATTTTGCCGGGAAACCAAGCA
GATATTTTGGCGGCATTTATTGATTTGAATGAGAATTCTGCCGGGATCAA
TGTTGTGTATCTGTGGGTGATGAGTGGGGCGTTGATGATCCTGACATATT
TTGCCTTGAGTCTGCGTTTGCGGAATGCGACAGCGAGTTAG

Coding sequence (CDS) from alignment at scaffold_6:434069..436059+

>mRNA_3472 ID=mRNA_3472|Name=jgi.p|Nanoce1779_2|564400|organism=Nannochloropsis oceanica|type=CDS|length=3660bp|location=Sequence derived from alignment at scaffold_6:434069..436059+ (Nannochloropsis oceanica)
ATGGGCACCAAGAAGGGATTACAACCATCGTCTTCCCGGCATGCACGTCA
GGCGAATGGGAAAGATAGTGGTGTGGTCTCGGTGGGCATCCAACACTCAT
TAGAATGGAACGTGGAGGCATATCAGGTGCCGAGTGGTAAAAATGGCAAG
TTTCGCTGCATTCTGAACAATATTTCTGGGAAGACAGTGAGCGGAGAATT
GACAGCGATTATGGGGCCGTCAGGTTGTGGTAAGACGACGCTGTTGGAGT
GTATCTCGTTGCGGAACCGGCGGTTTCATGGGAGCGTCCATTTTGACGGA
AAGGCCCCAGGGGGGGATGCTTTCACTGTGTCAGTACTTGTGCATCAAAA
GGAGCTGTTGTTTGGCTTCATGACCCCGAGGGAGTATCTCATTTTTCACG
CCTTGGCACGGATGGAGCGCACACATACCAGGGCCGAGATCGATACAAGG
ATTGAGGAGGTATTGCTGGACATGAAGTTAGACAAATGTGCTGATACCTT
GGTGGGTGGCACGGATCCTTTTTTCCAGAAAAAAGGTCTATCGGGCGGAG
AGAGGAAGCGGCTGGCGATTGCGTATGAGATGCTGTTGGCACCGAGTATG
ATTTTTTTGGACGAGCCATCTTCAGGCTTGGATTCGGTCATGTCCGAGTC
GATATTCCAATCTCTCAAGGATCTCGCCGACGGCGGTCGCGTCGTCATGG
CATCTGTTCATTGCCCCTCTTCCGAAGCCTGCCAACTCTTTAGCCACCTC
ATGCTTCTGACATGCGACGGTCGCCTAGCCTACCACGGCCCAACCTTGCA
GGGGATCGAGTACTTCTCCTCCTTGACGTACTTGTGCCCCCAGCACTACA
ATCCGGCAGATTTTTACCTGAAGCTTATCTCGTTCACCCCCGGGGGAGAA
GTCGAAGCAGAGGGGGCAAGGATGAATTTGTTGAGTGCCTCCTTTCAGAA
GTCCGCGATGTGTGTAAGCAAGCCGTTGGCGGTGGACAACAAGCATAAGG
CGTTGGGAGGGGTGCGTGGGGTTAAAGCCAGTACCTGGATCTTGTTAAAG
TTGAATTTTTGGAGGGCAAGCCTGAGGTTGCGGAGGGACAGGACGTTTGT
GGTGCTTTGGGGTATGATTAGTGTGATCGTGGGATTCCTTTTGGGGATAA
TCTACTTGCAACAGGCGCCCAATTCGTGGCGGAACCTGTTGGGGCTGCTT
TTCTCGCTGGTGGTGGCAGACATCTTCATGGGTTCTTTGGGGGTGATCAT
GCGATTTCCGTCGGAATGGGCAATTATTGTGAGGGAGTGTTACAGTGGTG
TCAATGCTGTGGGACCGTACTTGTTCGCGTCGTTCTGGGGGATCTTACCG
ATGGCCTACGGGCCGTTTTTGCTCGTTACGGTTATGTACTGGATGACAGG
GATGGATGCTGATTTTGTGAGGTACTTGAGGTTTGCGGGGATTTATTTGA
GTTATGACATTGCGTGTTTGGGGCTTGGCCAGTTCGTGAGTAGCTTGAGT
GGGAACCCGATGATTGGGATGACGATTTTGCCGGCGTTTGTGGCGCCGAT
GATCATGTTTTCGGGGGTGTTGTATCAAAAGAGCACGGTGCCTGCATGGT
TGGGGTGGATGCACCATGTGAGCTTGGTGAACTATTCGTTTTCGGCCTTG
ATGGCGGAGCAGATTCACATTTTGCCGGGAAACCAAGCAGATATTTTGGC
GGCATTTATTGATTTGAATGAGAATTCTGCCGGGATCAATGTTGTGTATC
TGTGGGTGATGAGTGGGGCGTTGATGATCCTGACATATTTTGCCTTGAGT
CTGCGTTTGCGGAATGCGACAGCGAGTTAGATGGGCACCAAGAAGGGATT
ACAACCATCGTCTTCCCGGCATGCACGTCAGGCGAATGGGAAAGATAGTG
GTGTGGTCTCGGTGGGCATCCAACACTCATTAGAATGGAACGTGGAGGCA
TATCAGGTGCCGAGTGGTAAAAATGGCAAGTTTCGCTGCATTCTGAACAA
TATTTCTGGGAAGACAGTGAGCGGAGAATTGACAGCGATTATGGGGCCGT
CAGGTTGTGGTAAGACGACGCTGTTGGAGTGTATCTCGTTGCGGAACCGG
CGGTTTCATGGGAGCGTCCATTTTGACGGAAAGGCCCCAGGGGGGGATGC
TTTCACTGTGTCAGTACTTGTGCATCAAAAGGAGCTGTTGTTTGGCTTCA
TGACCCCGAGGGAGTATCTCATTTTTCACGCCTTGGCACGGATGGAGCGC
ACACATACCAGGGCCGAGATCGATACAAGGATTGAGGAGGTATTGCTGGA
CATGAAGTTAGACAAATGTGCTGATACCTTGGTGGGTGGCACGGATCCTT
TTTTCCAGAAAAAAGGTCTATCGGGCGGAGAGAGGAAGCGGCTGGCGATT
GCGTATGAGATGCTGTTGGCACCGAGTATGATTTTTTTGGACGAGCCATC
TTCAGGCTTGGATTCGGTCATGTCCGAGTCGATATTCCAATCTCTCAAGG
ATCTCGCCGACGGCGGTCGCGTCGTCATGGCATCTGTTCATTGCCCCTCT
TCCGAAGCCTGCCAACTCTTTAGCCACCTCATGCTTCTGACATGCGACGG
TCGCCTAGCCTACCACGGCCCAACCTTGCAGGGGATCGAGTACTTCTCCT
CCTTGACGTACTTGTGCCCCCAGCACTACAATCCGGCAGATTTTTACCTG
AAGCTTATCTCGTTCACCCCCGGGGGAGAAGTCGAAGCAGAGGGGGCAAG
GATGAATTTGTTGAGTGCCTCCTTTCAGAAGTCCGCGATGTGTGTAAGCA
AGCCGTTGGCGGTGGACAACAAGCATAAGGCGTTGGGAGGGGTGCGTGGG
GTTAAAGCCAGTACCTGGATCTTGTTAAAGTTGAATTTTTGGAGGGCAAG
CCTGAGGTTGCGGAGGGACAGGACGTTTGTGGTGCTTTGGGGTATGATTA
GTGTGATCGTGGGATTCCTTTTGGGGATAATCTACTTGCAACAGGCGCCC
AATTCGTGGCGGAACCTGTTGGGGCTGCTTTTCTCGCTGGTGGTGGCAGA
CATCTTCATGGGTTCTTTGGGGGTGATCATGCGATTTCCGTCGGAATGGG
CAATTATTGTGAGGGAGTGTTACAGTGGTGTCAATGCTGTGGGACCGTAC
TTGTTCGCGTCGTTCTGGGGGATCTTACCGATGGCCTACGGGCCGTTTTT
GCTCGTTACGGTTATGTACTGGATGACAGGGATGGATGCTGATTTTGTGA
GGTACTTGAGGTTTGCGGGGATTTATTTGAGTTATGACATTGCGTGTTTG
GGGCTTGGCCAGTTCGTGAGTAGCTTGAGTGGGAACCCGATGATTGGGAT
GACGATTTTGCCGGCGTTTGTGGCGCCGATGATCATGTTTTCGGGGGTGT
TGTATCAAAAGAGCACGGTGCCTGCATGGTTGGGGTGGATGCACCATGTG
AGCTTGGTGAACTATTCGTTTTCGGCCTTGATGGCGGAGCAGATTCACAT
TTTGCCGGGAAACCAAGCAGATATTTTGGCGGCATTTATTGATTTGAATG
AGAATTCTGCCGGGATCAATGTTGTGTATCTGTGGGTGATGAGTGGGGCG
TTGATGATCCTGACATATTTTGCCTTGAGTCTGCGTTTGCGGAATGCGAC
AGCGAGTTAG

Synonyms

Publications