jgi.p|Nanoce1779_2|582258, mRNA_3471 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582258
Unique NamemRNA_3471
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length550
Alignment locationscaffold_6:428470..429019 +

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Properties
Property NameValue
TranscriptId582344
TrackFilteredModels2
ProteinId582258
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:428470..429019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582258gene_3471Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582258mRNA_3471-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3471CDS_3471Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3471 ID=mRNA_3471|Name=jgi.p|Nanoce1779_2|582258|organism=Nannochloropsis oceanica|type=mRNA|length=550bp
CCTGAACCGGTTACGTTGCCGGATGGCGTTCTCTCAAAGCCAAGTGGAGC
CCCGAGGAATCTTGGGGACTCAAATGTTCGTGAACCCAATCAGCGCGCAC
ATTCCCTATTACTCTGTATCATAGTATGATGTACATGGCGATGCCATGGG
ATTCATTTGTTTGCTATTCTCGTTTGTACTTTTGTACTTTATATAGAGGA
TGGCCTTCAAACTCTCCATTCAAAGTCATAATTTCTTGGCTTCACTTTGT
GTTCTATTAACGCGGACTTTCTCATTGTTTCGCGTCCTCGGAGACTCAAC
TCCCACACACAAATGCACTCACACCACACAGTCTGAGTTTGATAATGGGC
GAGAGCAGTGCGAGAGACTTTGTATGGAAAATTTGGAAGGCAGCAGACAG
CAGCAGCGACGACAATCGGCTAACCTTCGGCGACCGCCATCACAAACTCC
TCCTCAAGGAGGCCTTATTCATGACATCTCGGGGGAAGTACGGATAAAGA
ATGGGTGGGCATCTTGAAGGAGGATCGAGGATGGCAAGGTGAGGAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|582258

>mRNA_3471-protein ID=mRNA_3471-protein|Name=jgi.p|Nanoce1779_2|582258|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MAFKLSIQSHNFLASLCVLLTRTFSLFRVLGDSTPTHKCTHTTQSEFDNG
REQCERLCMENLEGSRQQQRRQSANLRRPPSQTPPQGGLIHDISGEVRIK
NGWAS*
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mRNA from alignment at scaffold_6:428470..429019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3471 ID=mRNA_3471|Name=jgi.p|Nanoce1779_2|582258|organism=Nannochloropsis oceanica|type=mRNA|length=550bp|location=Sequence derived from alignment at scaffold_6:428470..429019+ (Nannochloropsis oceanica)
CCTGAACCGGTTACGTTGCCGGATGGCGTTCTCTCAAAGCCAAGTGGAGC
CCCGAGGAATCTTGGGGACTCAAATGTTCGTGAACCCAATCAGCGCGCAC
ATTCCCTATTACTCTGTATCATAGTATGATGTACATGGCGATGCCATGGG
ATTCATTTGTTTGCTATTCTCGTTTGTACTTTTGTACTTTATATAGAGGA
TGGCCTTCAAACTCTCCATTCAAAGTCATAATTTCTTGGCTTCACTTTGT
GTTCTATTAACGCGGACTTTCTCATTGTTTCGCGTCCTCGGAGACTCAAC
TCCCACACACAAATGCACTCACACCACACAGTCTGAGTTTGATAATGGGC
GAGAGCAGTGCGAGAGACTTTGTATGGAAAATTTGGAAGGCAGCAGACAG
CAGCAGCGACGACAATCGGCTAACCTTCGGCGACCGCCATCACAAACTCC
TCCTCAAGGAGGCCTTATTCATGACATCTCGGGGGAAGTACGGATAAAGA
ATGGGTGGGCATCTTGAAGGAGGATCGAGGATGGCAAGGTGAGGAGGAGG
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Coding sequence (CDS) from alignment at scaffold_6:428470..429019+

>mRNA_3471 ID=mRNA_3471|Name=jgi.p|Nanoce1779_2|582258|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_6:428470..429019+ (Nannochloropsis oceanica)
ATGGCCTTCAAACTCTCCATTCAAAGTCATAATTTCTTGGCTTCACTTTG
TGTTCTATTAACGCGGACTTTCTCATTGTTTCGCGTCCTCGGAGACTCAA
CTCCCACACACAAATGCACTCACACCACACAGTCTGAGTTTGATAATGGG
CGAGAGCAGTGCGAGAGACTTTGTATGGAAAATTTGGAAGGCAGCAGACA
GCAGCAGCGACGACAATCGGCTAACCTTCGGCGACCGCCATCACAAACTC
CTCCTCAAGGAGGCCTTATTCATGACATCTCGGGGGAAGTACGGATAAAG
AATGGGTGGGCATCTTGA
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Synonyms
Publications