jgi.p|Nanoce1779_2|582240, mRNA_3466 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582240
Unique Name	mRNA_3466
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2221
Alignment location	scaffold_6:404722..406942 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582326
Track	FilteredModels2
ProteinId	582240

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:404722..406942 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582240	gene_3466	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582240	mRNA_3466-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3466	CDS_3466	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:404722..406942+
coding sequence from alignment at scaffold_6:404722..406942+

mRNA sequence

>mRNA_3466 ID=mRNA_3466|Name=jgi.p|Nanoce1779_2|582240|organism=Nannochloropsis oceanica|type=mRNA|length=2221bp
CAGGCATCTCTTCGTTCATCGAGCATCCCGCGGGTTTTTTTATGGATCAA
GAAGGACGTCGCGCCAAAAAGGTCATGGGCCTCGAAAGTTGCCGGATTTC
TTGCGGTGAAGGGGGCGCAACTTTGGAGTTTGGGCTCAGCTTGACTGCGC
TGTGGGTGGGATATTATCGCATAAGGGAAGCGAGCGTCCCTTCCCCGCTG
TTCTTCGACCCCTTGGCCAAGGCCTTGATGAAGGAGGAGAACGCGGAGTG
GGCATTTCAACGCATGCAAGACGCTTTGGAAGATACTTTGTTCATGAGCA
AAGCTGCCTATACACGCACTGAACAGGGCTTCTTTCCAGTGCGCACACGT
TTCATTGATGACCACGTGGACCGATCCCTCTACAACCATGCCCTGCTGGC
CGAGCGCGGGTCGGGCGGGCAGTCTCGTCGGCAGCTCCAAGTCGTGGATA
TTGCCTGCGGATTCGATGCTCGGGCCTTTCGCCTCAACTTCCCTGATAAC
ACCGTGTTCTTCGAGGTGGATCGCGCGGAGGTGATTGCCCTCAAGACCGA
CCGCCTTGCCCATATTTCCCCCCCCCCCTCCCTCACCTGTGCTAAGCGGG
TCTGCATCCCCGCGGACATACTTTTGGACGATTGGGAGGCCGATTTGGTG
GCCAAGGGGTTTGAAGCGAGCTTGCCCACTGTCTGGATTTGCGAAGGCAT
CTTGACTTACCTCCCCGAACCACAGGCACTGGCGTTCTTGGCACGTGTGC
GTGACGTCTCTGCGCCCGGCTCCACACTGGTGTGTGATGTCGTGAATGAC
ATGATCCGGAACGCTGCTCCAATGCGAAAGCGAATGGATTTGCTGCGCAA
GGACGGGGCGCAGTATAATCTTTTCATTTCTAACCCGGTAGCGTTTTGGA
AAAGCAAGGCTAATTTCTCTGACGTCAAGTACCACTTGCCTGGTGAAGGG
ACGGCGAGCTATGGACGCATCCCTCCCCACCCTTTTCTCAGAGCCATGCG
ATTGACCATCCGTGTGGTCATTTCAACTTTATTGTTGAGCGGGGCTTTTC
TGTGTGGATATTACTTGTCACTGTGGGTAGCAGTGCCGGTCATGCTTGGC
CTCATCGTCGTTGGCGAGGGATGGGCACTCCTCTTTCAGGAGTGGTTGGC
CCTGCGGTTGACGATGACCTTATATCCTGTCGCTTACTTTACAGAAGTGT
CGGTGTAAAAGTGGGGGGAGGGGAAAAGCGGGAAAGCGGAACAGAGGGGA
TGCTTCTTGGAATTGCGTGTGATGTTGCCCTTGTTGCGCAAATGAATCAT
CTGAAGGGAGAATGCAACAGAAGTAAATGAATGAGTAGAGAGAACGACGG
GCGTCTCGTAGTCCGCTTCAGTCGCACGCAAGTAAAGGGACGAATGGTTT
TGAATTTTGACGTCTGTAGTGCTCTTCGCCTTTTGTGGCTGGAGACTACT
AGAACCTCGTTGTGAATCGTATTGTTTCAGTTGACTTGTCCCTCTCATGT
AATCCATGTTTTTACCTATTCTTGCCTAGCGTACTAACTACTTGGATCTT
GAATGCTGCTTCTAACCGTATCTCGTGGAAGAACATAAATTGTGTCACCA
CAACCTCCGCAGATCAGACCAAGCGTCCGCACGTCCTGGACAAAACATGA
CACCTACAAGGTAGGATGGAAAACTCTTGTGCGCTGCTTACCGATCATTT
GTGAGAAAAGAAGCACAACTAGCGCGCTCTCTCTCTTTTTTGTTGTCTAC
TGCATCACTATGTCTGCTTTTCTTGGAGCATGGCGTTTGTAGCGCTGGCG
GCAACGAATATTTACGAGAAGAGAACTTCAAAGCACTAGTAGAATACTTG
GGGGGTGTTCAGCTCCCCCCAAAACCCTTGAATAGGCTATTTAAGGGTTT
TAAGTCCTTAAGTAATTAATTAGGTTCTCCAATTTAAGGGCTTACTTCCC
ACGCCGTGCCAACCCCGCGGCCATGTTCAAGTCAAGTTTCGTCGCCGTTG
CTTTTCTCCAACAGCTACCAACAACAGCGACCTGGAGACCCATCCCGAGC
AAGCAACAAACGAGTTGTGACACGATAGCACGCAAAGAATCCTGACGTTC
TTAAAAAGCCCATCTCACTTGCGGCCTTCTTGTACTTGTACTTATCATTT
GCCCGCACCAAAACAGATTTATGCTGCCCGCCGAAGACTCGCCGCCGCCC
CTAACCATGCCTCCTTCCACA

protein sequence of jgi.p|Nanoce1779_2|582240

>mRNA_3466-protein ID=mRNA_3466-protein|Name=jgi.p|Nanoce1779_2|582240|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MDQEGRRAKKVMGLESCRISCGEGGATLEFGLSLTALWVGYYRIREASVP
SPLFFDPLAKALMKEENAEWAFQRMQDALEDTLFMSKAAYTRTEQGFFPV
RTRFIDDHVDRSLYNHALLAERGSGGQSRRQLQVVDIACGFDARAFRLNF
PDNTVFFEVDRAEVIALKTDRLAHISPPPSLTCAKRVCIPADILLDDWEA
DLVAKGFEASLPTVWICEGILTYLPEPQALAFLARVRDVSAPGSTLVCDV
VNDMIRNAAPMRKRMDLLRKDGAQYNLFISNPVAFWKSKANFSDVKYHLP
GEGTASYGRIPPHPFLRAMRLTIRVVISTLLLSGAFLCGYYLSLWVAVPV
MLGLIVVGEGWALLFQEWLALRLTMTLYPVAYFTEVSV*

mRNA from alignment at scaffold_6:404722..406942+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3466 ID=mRNA_3466|Name=jgi.p|Nanoce1779_2|582240|organism=Nannochloropsis oceanica|type=mRNA|length=2221bp|location=Sequence derived from alignment at scaffold_6:404722..406942+ (Nannochloropsis oceanica)
CAGGCATCTCTTCGTTCATCGAGCATCCCGCGGGTTTTTTTATGGATCAA
GAAGGACGTCGCGCCAAAAAGGTCATGGGCCTCGAAAGTTGCCGGATTTC
TTGCGGTGAAGGGGGCGCAACTTTGGAGTTTGGGCTCAGCTTGACTGCGC
TGTGGGTGGGATATTATCGCATAAGGGAAGCGAGCGTCCCTTCCCCGCTG
TTCTTCGACCCCTTGGCCAAGGCCTTGATGAAGGAGGAGAACGCGGAGTG
GGCATTTCAACGCATGCAAGACGCTTTGGAAGATACTTTGTTCATGAGCA
AAGCTGCCTATACACGCACTGAACAGGGCTTCTTTCCAGTGCGCACACGT
TTCATTGATGACCACGTGGACCGATCCCTCTACAACCATGCCCTGCTGGC
CGAGCGCGGGTCGGGCGGGCAGTCTCGTCGGCAGCTCCAAGTCGTGGATA
TTGCCTGCGGATTCGATGCTCGGGCCTTTCGCCTCAACTTCCCTGATAAC
ACCGTGTTCTTCGAGGTGGATCGCGCGGAGGTGATTGCCCTCAAGACCGA
CCGCCTTGCCCATATTTCCCCCCCCCCCTCCCTCACCTGTGCTAAGCGGG
TCTGCATCCCCGCGGACATACTTTTGGACGATTGGGAGGCCGATTTGGTG
GCCAAGGGGTTTGAAGCGAGCTTGCCCACTGTCTGGATTTGCGAAGGCAT
CTTGACTTACCTCCCCGAACCACAGGCACTGGCGTTCTTGGCACGTGTGC
GTGACGTCTCTGCGCCCGGCTCCACACTGGTGTGTGATGTCGTGAATGAC
ATGATCCGGAACGCTGCTCCAATGCGAAAGCGAATGGATTTGCTGCGCAA
GGACGGGGCGCAGTATAATCTTTTCATTTCTAACCCGGTAGCGTTTTGGA
AAAGCAAGGCTAATTTCTCTGACGTCAAGTACCACTTGCCTGGTGAAGGG
ACGGCGAGCTATGGACGCATCCCTCCCCACCCTTTTCTCAGAGCCATGCG
ATTGACCATCCGTGTGGTCATTTCAACTTTATTGTTGAGCGGGGCTTTTC
TGTGTGGATATTACTTGTCACTGTGGGTAGCAGTGCCGGTCATGCTTGGC
CTCATCGTCGTTGGCGAGGGATGGGCACTCCTCTTTCAGGAGTGGTTGGC
CCTGCGGTTGACGATGACCTTATATCCTGTCGCTTACTTTACAGAAGTGT
CGGTGTAAAAGTGGGGGGAGGGGAAAAGCGGGAAAGCGGAACAGAGGGGA
TGCTTCTTGGAATTGCGTGTGATGTTGCCCTTGTTGCGCAAATGAATCAT
CTGAAGGGAGAATGCAACAGAAGTAAATGAATGAGTAGAGAGAACGACGG
GCGTCTCGTAGTCCGCTTCAGTCGCACGCAAGTAAAGGGACGAATGGTTT
TGAATTTTGACGTCTGTAGTGCTCTTCGCCTTTTGTGGCTGGAGACTACT
AGAACCTCGTTGTGAATCGTATTGTTTCAGTTGACTTGTCCCTCTCATGT
AATCCATGTTTTTACCTATTCTTGCCTAGCGTACTAACTACTTGGATCTT
GAATGCTGCTTCTAACCGTATCTCGTGGAAGAACATAAATTGTGTCACCA
CAACCTCCGCAGATCAGACCAAGCGTCCGCACGTCCTGGACAAAACATGA
CACCTACAAGGTAGGATGGAAAACTCTTGTGCGCTGCTTACCGATCATTT
GTGAGAAAAGAAGCACAACTAGCGCGCTCTCTCTCTTTTTTGTTGTCTAC
TGCATCACTATGTCTGCTTTTCTTGGAGCATGGCGTTTGTAGCGCTGGCG
GCAACGAATATTTACGAGAAGAGAACTTCAAAGCACTAGTAGAATACTTG
GGGGGTGTTCAGCTCCCCCCAAAACCCTTGAATAGGCTATTTAAGGGTTT
TAAGTCCTTAAGTAATTAATTAGGTTCTCCAATTTAAGGGCTTACTTCCC
ACGCCGTGCCAACCCCGCGGCCATGTTCAAGTCAAGTTTCGTCGCCGTTG
CTTTTCTCCAACAGCTACCAACAACAGCGACCTGGAGACCCATCCCGAGC
AAGCAACAAACGAGTTGTGACACGATAGCACGCAAAGAATCCTGACGTTC
TTAAAAAGCCCATCTCACTTGCGGCCTTCTTGTACTTGTACTTATCATTT
GCCCGCACCAAAACAGATTTATGCTGCCCGCCGAAGACTCGCCGCCGCCC
CTAACCATGCCTCCTTCCACA

Coding sequence (CDS) from alignment at scaffold_6:404722..406942+

>mRNA_3466 ID=mRNA_3466|Name=jgi.p|Nanoce1779_2|582240|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at scaffold_6:404722..406942+ (Nannochloropsis oceanica)
ATGGATCAAGAAGGACGTCGCGCCAAAAAGGTCATGGGCCTCGAAAGTTG
CCGGATTTCTTGCGGTGAAGGGGGCGCAACTTTGGAGTTTGGGCTCAGCT
TGACTGCGCTGTGGGTGGGATATTATCGCATAAGGGAAGCGAGCGTCCCT
TCCCCGCTGTTCTTCGACCCCTTGGCCAAGGCCTTGATGAAGGAGGAGAA
CGCGGAGTGGGCATTTCAACGCATGCAAGACGCTTTGGAAGATACTTTGT
TCATGAGCAAAGCTGCCTATACACGCACTGAACAGGGCTTCTTTCCAGTG
CGCACACGTTTCATTGATGACCACGTGGACCGATCCCTCTACAACCATGC
CCTGCTGGCCGAGCGCGGGTCGGGCGGGCAGTCTCGTCGGCAGCTCCAAG
TCGTGGATATTGCCTGCGGATTCGATGCTCGGGCCTTTCGCCTCAACTTC
CCTGATAACACCGTGTTCTTCGAGGTGGATCGCGCGGAGGTGATTGCCCT
CAAGACCGACCGCCTTGCCCATATTTCCCCCCCCCCCTCCCTCACCTGTG
CTAAGCGGGTCTGCATCCCCGCGGACATACTTTTGGACGATTGGGAGGCC
GATTTGGTGGCCAAGGGGTTTGAAGCGAGCTTGCCCACTGTCTGGATTTG
CGAAGGCATCTTGACTTACCTCCCCGAACCACAGGCACTGGCGTTCTTGG
CACGTGTGCGTGACGTCTCTGCGCCCGGCTCCACACTGGTGTGTGATGTC
GTGAATGACATGATCCGGAACGCTGCTCCAATGCGAAAGCGAATGGATTT
GCTGCGCAAGGACGGGGCGCAGTATAATCTTTTCATTTCTAACCCGGTAG
CGTTTTGGAAAAGCAAGGCTAATTTCTCTGACGTCAAGTACCACTTGCCT
GGTGAAGGGACGGCGAGCTATGGACGCATCCCTCCCCACCCTTTTCTCAG
AGCCATGCGATTGACCATCCGTGTGGTCATTTCAACTTTATTGTTGAGCG
GGGCTTTTCTGTGTGGATATTACTTGTCACTGTGGGTAGCAGTGCCGGTC
ATGCTTGGCCTCATCGTCGTTGGCGAGGGATGGGCACTCCTCTTTCAGGA
GTGGTTGGCCCTGCGGTTGACGATGACCTTATATCCTGTCGCTTACTTTA
CAGAAGTGTCGGTGTAA

Synonyms

Publications