jgi.p|Nanoce1779_2|582207, mRNA_3464 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582207
Unique NamemRNA_3464
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2168
Alignment locationscaffold_6:392647..394814 -

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Properties
Property NameValue
TranscriptId582293
TrackFilteredModels2
ProteinId582207
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:392647..394814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582207gene_3464Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582207mRNA_3464-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3464CDS_3464Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3464 ID=mRNA_3464|Name=jgi.p|Nanoce1779_2|582207|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp
CGGCCGCTGCCAGCCGCAGCAACTCCCGCATCTATATCCTGGCCCAGCGC
CTCGGTCTGACCACTTTAAACAACAGCAGCAGCAGCAGCAGCCGTGGCCT
GCACTATCAAGCCGCTCTTGGCTCAGACGCCGATGTCGCGCGTGTCGTCC
GCGAGCGTCAAACGGACCTCCTCGTCCTCGGATGTGGTGTGGCCGGATGC
GCCGCCGCGCTCAAGGCTGCCGAACAAGGGCTGAAGGTGACAATGGTCAC
CTCAGCAACCGATCCATTGGACTGCAATTCGTTTTGGGCCCAAGGTGGGA
TCATCTACAAGGCCACTGACGATAGCCCCTCGTTGCTGTCCTCCGATATC
ATGGTGGCAGGCGCAGGTGTGAATGATCCTTTGGCAGTGGAAAAGCTTGC
CATGAAAGGGCCTGGGTGCGTGGAGGACCTGCTTTTACGCCTGGCTCCTG
TCCCCTTCGATCGGAAGCCGGATGGCGGGCTGGCTTTGTGCTTGGAGGCC
TCCCACAACCGCGCGCGGATTATTCATTGGCGGGATCACACGGGGAGGGC
CATCACCGAAAGCTTGCAGCAAGCCGCGGCCTCCCACCTCAATATTCTCC
TTTTATCCGGTATGACAGCTGTCGATCTGGCCGTGACCGAGGATGGAGGG
AAGGTGTCTCGTGACTCGTTGGCAAACAAGCAGCAGCAACAGCGGCGTTG
TCTGGGAGCGCACCTCATGCGTGTCACTCCTGATGCGACCGAGCCCGTAG
CGTTGCGGGCGCCTGCTACGGTACTTGCTACTGGAGGGTTGGGCGAGCTC
TACCAGCATACCTCGAACCCTGCCTCTGCTCGGGGGGACGGTTTTGCCAT
GGCATTTCGGGCAGGCGCAGCATTGCAGAACATGGAATATGTGCAGTTCC
ATCCCACCACGTTGCACTTACCTGGCGAGAGGTCTTTCCTTCTGACTGAG
GCTTTGCGAGGGGAAGGGGCGCGGTTGATCAATTTAGAGGGGGAAGCGTT
TGCTACTCGATACCACCCTCAGGGGGAACTGGCCCCAAGGGATGTAGTCT
CGCGGATGATTGTCAGCGAGATGTCACGAACGGGGGCTAGCCATATGTTG
CTGGATATTTCACATCGGGAAAAAGGGTGGCTGAGGGGAAGGTTTCCGTC
GATCGATGCACACTGCCGTGCCCGGGGACTGGACATGACGCGACAGGCCT
TGCCAGTTGTCCCTGCTGCGCACTACTTCTGTGGGGGGGTGGTGACTGAC
TTGGAGGGGCAGACGAGTCTGCCTGGTTTGTTTGCTGCTGGGGAAGTGGC
ATGCACGGGGCTGCACGGCGCGAACCGACTTGCCTCGACGTCACTGTTGG
AGGGACTAGTTTGGGGGGTAGCGATTGCTGAGCAACTCAAGACGGCACGT
GCGGGCAAGGATGGGGAGAAGGCTGCCATAGCCATTTCTAATATGGCCCA
GAAAGCGGAATTGGCACCGTTGGGGCATTCGGTGAATGGGGCGAACCAAT
CGTTACCTGCAGCGAAGCCGGAGCAAGTTGATGCTTACATGGCCGAGATC
CGTCGAACACTCTGGGAGAATGTGGGAGTGGTGAGGCGCCCGGAGGGCCT
GGAGCATGCTAGTTGCTATCTGCGACGGATTGAAGCAGAGGTGTTGCGGT
TTTATGCCTCCACGCGGTTGAGCAAAGAGACGGTGTCGTTACGGAACGCG
GCGGAGACTGCTCGGCTGATTGCGAGGGCGGCGGCAAGGAACACGCAGAG
CATCGGCACTCACTACGTTGAAAGTGATGAAGGAGAAGAAGCGGATGAGG
AAGAGCAAGAGCGCAAGCTTATGCTTTAGGGGCAAATAGAAAGTATGGAG
ACTTTCCCTCATTCCGTTTAATCCACATTTTTTAAACGAAGTCACCGATC
CGAGAGAAGAGGAAAAGGAGCAGCAGCTGGTGCAAGTGAGGGAGAATTTA
CTCGTACACCTGAATTGACATGGGAAAAAAGGACGCAGCATCATGGAGGT
CAATCAACGGTCAGAGATGTCAGTCGAGCAAATGGTAACGCAGGAGGAAG
GGGAGGTTTTTTATCGGCAAGGAAGAATTAAAGTCAAGCGAGAATTAGGG
AGCGGATACCTCAGTGGGGTATCGTAGACGACAATTAGAAGTGAAAGAAT
TAGAACTATTACTTAGTA
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protein sequence of jgi.p|Nanoce1779_2|582207

>mRNA_3464-protein ID=mRNA_3464-protein|Name=jgi.p|Nanoce1779_2|582207|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MVTSATDPLDCNSFWAQGGIIYKATDDSPSLLSSDIMVAGAGVNDPLAVE
KLAMKGPGCVEDLLLRLAPVPFDRKPDGGLALCLEASHNRARIIHWRDHT
GRAITESLQQAAASHLNILLLSGMTAVDLAVTEDGGKVSRDSLANKQQQQ
RRCLGAHLMRVTPDATEPVALRAPATVLATGGLGELYQHTSNPASARGDG
FAMAFRAGAALQNMEYVQFHPTTLHLPGERSFLLTEALRGEGARLINLEG
EAFATRYHPQGELAPRDVVSRMIVSEMSRTGASHMLLDISHREKGWLRGR
FPSIDAHCRARGLDMTRQALPVVPAAHYFCGGVVTDLEGQTSLPGLFAAG
EVACTGLHGANRLASTSLLEGLVWGVAIAEQLKTARAGKDGEKAAIAISN
MAQKAELAPLGHSVNGANQSLPAAKPEQVDAYMAEIRRTLWENVGVVRRP
EGLEHASCYLRRIEAEVLRFYASTRLSKETVSLRNAAETARLIARAAARN
TQSIGTHYVESDEGEEADEEEQERKLML*
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mRNA from alignment at scaffold_6:392647..394814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3464 ID=mRNA_3464|Name=jgi.p|Nanoce1779_2|582207|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp|location=Sequence derived from alignment at scaffold_6:392647..394814- (Nannochloropsis oceanica)
CGGCCGCTGCCAGCCGCAGCAACTCCCGCATCTATATCCTGGCCCAGCGC
CTCGGTCTGACCACTTTAAACAACAGCAGCAGCAGCAGCAGCCGTGGCCT
GCACTATCAAGCCGCTCTTGGCTCAGACGCCGATGTCGCGCGTGTCGTCC
GCGAGCGTCAAACGGACCTCCTCGTCCTCGGATGTGGTGTGGCCGGATGC
GCCGCCGCGCTCAAGGCTGCCGAACAAGGGCTGAAGGTGACAATGGTCAC
CTCAGCAACCGATCCATTGGACTGCAATTCGTTTTGGGCCCAAGGTGGGA
TCATCTACAAGGCCACTGACGATAGCCCCTCGTTGCTGTCCTCCGATATC
ATGGTGGCAGGCGCAGGTGTGAATGATCCTTTGGCAGTGGAAAAGCTTGC
CATGAAAGGGCCTGGGTGCGTGGAGGACCTGCTTTTACGCCTGGCTCCTG
TCCCCTTCGATCGGAAGCCGGATGGCGGGCTGGCTTTGTGCTTGGAGGCC
TCCCACAACCGCGCGCGGATTATTCATTGGCGGGATCACACGGGGAGGGC
CATCACCGAAAGCTTGCAGCAAGCCGCGGCCTCCCACCTCAATATTCTCC
TTTTATCCGGTATGACAGCTGTCGATCTGGCCGTGACCGAGGATGGAGGG
AAGGTGTCTCGTGACTCGTTGGCAAACAAGCAGCAGCAACAGCGGCGTTG
TCTGGGAGCGCACCTCATGCGTGTCACTCCTGATGCGACCGAGCCCGTAG
CGTTGCGGGCGCCTGCTACGGTACTTGCTACTGGAGGGTTGGGCGAGCTC
TACCAGCATACCTCGAACCCTGCCTCTGCTCGGGGGGACGGTTTTGCCAT
GGCATTTCGGGCAGGCGCAGCATTGCAGAACATGGAATATGTGCAGTTCC
ATCCCACCACGTTGCACTTACCTGGCGAGAGGTCTTTCCTTCTGACTGAG
GCTTTGCGAGGGGAAGGGGCGCGGTTGATCAATTTAGAGGGGGAAGCGTT
TGCTACTCGATACCACCCTCAGGGGGAACTGGCCCCAAGGGATGTAGTCT
CGCGGATGATTGTCAGCGAGATGTCACGAACGGGGGCTAGCCATATGTTG
CTGGATATTTCACATCGGGAAAAAGGGTGGCTGAGGGGAAGGTTTCCGTC
GATCGATGCACACTGCCGTGCCCGGGGACTGGACATGACGCGACAGGCCT
TGCCAGTTGTCCCTGCTGCGCACTACTTCTGTGGGGGGGTGGTGACTGAC
TTGGAGGGGCAGACGAGTCTGCCTGGTTTGTTTGCTGCTGGGGAAGTGGC
ATGCACGGGGCTGCACGGCGCGAACCGACTTGCCTCGACGTCACTGTTGG
AGGGACTAGTTTGGGGGGTAGCGATTGCTGAGCAACTCAAGACGGCACGT
GCGGGCAAGGATGGGGAGAAGGCTGCCATAGCCATTTCTAATATGGCCCA
GAAAGCGGAATTGGCACCGTTGGGGCATTCGGTGAATGGGGCGAACCAAT
CGTTACCTGCAGCGAAGCCGGAGCAAGTTGATGCTTACATGGCCGAGATC
CGTCGAACACTCTGGGAGAATGTGGGAGTGGTGAGGCGCCCGGAGGGCCT
GGAGCATGCTAGTTGCTATCTGCGACGGATTGAAGCAGAGGTGTTGCGGT
TTTATGCCTCCACGCGGTTGAGCAAAGAGACGGTGTCGTTACGGAACGCG
GCGGAGACTGCTCGGCTGATTGCGAGGGCGGCGGCAAGGAACACGCAGAG
CATCGGCACTCACTACGTTGAAAGTGATGAAGGAGAAGAAGCGGATGAGG
AAGAGCAAGAGCGCAAGCTTATGCTTTAGGGGCAAATAGAAAGTATGGAG
ACTTTCCCTCATTCCGTTTAATCCACATTTTTTAAACGAAGTCACCGATC
CGAGAGAAGAGGAAAAGGAGCAGCAGCTGGTGCAAGTGAGGGAGAATTTA
CTCGTACACCTGAATTGACATGGGAAAAAAGGACGCAGCATCATGGAGGT
CAATCAACGGTCAGAGATGTCAGTCGAGCAAATGGTAACGCAGGAGGAAG
GGGAGGTTTTTTATCGGCAAGGAAGAATTAAAGTCAAGCGAGAATTAGGG
AGCGGATACCTCAGTGGGGTATCGTAGACGACAATTAGAAGTGAAAGAAT
TAGAACTATTACTTAGTA
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Coding sequence (CDS) from alignment at scaffold_6:392647..394814-

>mRNA_3464 ID=mRNA_3464|Name=jgi.p|Nanoce1779_2|582207|organism=Nannochloropsis oceanica|type=CDS|length=1587bp|location=Sequence derived from alignment at scaffold_6:392647..394814- (Nannochloropsis oceanica)
ATGGTCACCTCAGCAACCGATCCATTGGACTGCAATTCGTTTTGGGCCCA
AGGTGGGATCATCTACAAGGCCACTGACGATAGCCCCTCGTTGCTGTCCT
CCGATATCATGGTGGCAGGCGCAGGTGTGAATGATCCTTTGGCAGTGGAA
AAGCTTGCCATGAAAGGGCCTGGGTGCGTGGAGGACCTGCTTTTACGCCT
GGCTCCTGTCCCCTTCGATCGGAAGCCGGATGGCGGGCTGGCTTTGTGCT
TGGAGGCCTCCCACAACCGCGCGCGGATTATTCATTGGCGGGATCACACG
GGGAGGGCCATCACCGAAAGCTTGCAGCAAGCCGCGGCCTCCCACCTCAA
TATTCTCCTTTTATCCGGTATGACAGCTGTCGATCTGGCCGTGACCGAGG
ATGGAGGGAAGGTGTCTCGTGACTCGTTGGCAAACAAGCAGCAGCAACAG
CGGCGTTGTCTGGGAGCGCACCTCATGCGTGTCACTCCTGATGCGACCGA
GCCCGTAGCGTTGCGGGCGCCTGCTACGGTACTTGCTACTGGAGGGTTGG
GCGAGCTCTACCAGCATACCTCGAACCCTGCCTCTGCTCGGGGGGACGGT
TTTGCCATGGCATTTCGGGCAGGCGCAGCATTGCAGAACATGGAATATGT
GCAGTTCCATCCCACCACGTTGCACTTACCTGGCGAGAGGTCTTTCCTTC
TGACTGAGGCTTTGCGAGGGGAAGGGGCGCGGTTGATCAATTTAGAGGGG
GAAGCGTTTGCTACTCGATACCACCCTCAGGGGGAACTGGCCCCAAGGGA
TGTAGTCTCGCGGATGATTGTCAGCGAGATGTCACGAACGGGGGCTAGCC
ATATGTTGCTGGATATTTCACATCGGGAAAAAGGGTGGCTGAGGGGAAGG
TTTCCGTCGATCGATGCACACTGCCGTGCCCGGGGACTGGACATGACGCG
ACAGGCCTTGCCAGTTGTCCCTGCTGCGCACTACTTCTGTGGGGGGGTGG
TGACTGACTTGGAGGGGCAGACGAGTCTGCCTGGTTTGTTTGCTGCTGGG
GAAGTGGCATGCACGGGGCTGCACGGCGCGAACCGACTTGCCTCGACGTC
ACTGTTGGAGGGACTAGTTTGGGGGGTAGCGATTGCTGAGCAACTCAAGA
CGGCACGTGCGGGCAAGGATGGGGAGAAGGCTGCCATAGCCATTTCTAAT
ATGGCCCAGAAAGCGGAATTGGCACCGTTGGGGCATTCGGTGAATGGGGC
GAACCAATCGTTACCTGCAGCGAAGCCGGAGCAAGTTGATGCTTACATGG
CCGAGATCCGTCGAACACTCTGGGAGAATGTGGGAGTGGTGAGGCGCCCG
GAGGGCCTGGAGCATGCTAGTTGCTATCTGCGACGGATTGAAGCAGAGGT
GTTGCGGTTTTATGCCTCCACGCGGTTGAGCAAAGAGACGGTGTCGTTAC
GGAACGCGGCGGAGACTGCTCGGCTGATTGCGAGGGCGGCGGCAAGGAAC
ACGCAGAGCATCGGCACTCACTACGTTGAAAGTGATGAAGGAGAAGAAGC
GGATGAGGAAGAGCAAGAGCGCAAGCTTATGCTTTAG
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Synonyms
Publications