Properties
| Property Name | Value |
|---|
| TranscriptId | 539385 |
| Track | FilteredModels2 |
| ProteinId | 539299 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:389509..392250 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3463 ID=mRNA_3463|Name=jgi.p|Nanoce1779_2|539299|organism=Nannochloropsis oceanica|type=mRNA|length=2581bp
AACAGGCATCCGTGTTACCAGAGCACCATGTTGTCTCGTCTATCAGTTTC
AGCCAGGGGGATTTCGCCTTCGGCGGTTCTCCGTGCCGGCAGCCAAGCGG
GCGCCGTCCGCAACCTGACGCGAAGCGGGGCGGCCCGTCAAGCGCAGAAG
GACTTGGGAGACATCATCGGCATTGATCTCGGTACAACCAACTCATGTGT
GGCCATTATGGAGGGTCGCACGCCTCGTGTGATTGAGAATGCTGAAGGCG
CGCGGACCACACCGTCGGTGGTGGCCTTCTCGAATGACGGACAGCGTTTA
GTGGGGCTGCCGGCAAAGCGACAGGCCGTGACCAACCCAGAGAACACGCT
GTATGCGGTCAAGCGTTTGATTGGCCGCAAATTTACTGATAAGGAGGTGA
AAGGTGTGAAAAATCTAGTGCCGTACAAGATCATCAAGGCGGATACCTCG
GACGACGCATGGGTGGAGGCAGGGGGCAAGCGGTTGTCCCCGTCTCAGGT
GGGCTCTATGGTCCTGGGGAAGATGAAGGAGACGGCCGAGAGTTTTTTGG
GTCGACCGATCACAAAGGCGGTTGTGACCGTACCTGCTTACTTTAATGAC
TCGCAGCGGCAAGCGACAAAAGACGCGGGGAGGATCGCGGGGTTGGATGT
GCAGCGGATCATCAATGAACCGACGGCCGCGGCATTGGCATATGGGTTGG
ACCGTGCTGAGGGAAAGTTGATTGCGGTGTTTGACTTAGGGGGTGGGACT
TTCGACGTGTCGATTTTGGAGATTTCGGGAGGTGTATTTGAGGTAAAAGC
GACAAATGGCGATACGATGTTGGGGGGGGAAGACTTTGACGAGGAGCTGT
TGAAGCACTTGGCGCAGGAGTTTAGGAAGGATAGTGGCATCGACTTGAGC
AAGGACAGGTTGGCCATGCAGAGGCTGAGGGAGGCGGCGGAGAAGGCGAA
AAGAGAATTGGATGGCTTGGCCCAGACGGACGTGAGTCTGCCATTTATCA
CCGCGGACCAGACGGGGCCGAAGCATTTGAACGTCAAGATCTCGCGCGCG
CAGTTCGAGAAGCTGGTCGATGGGTTGGTGCAACGCACTATTCAGCCGTG
CAAAAGCTGTCTGAAGGACGCGAGTGTTGAGAAGAAGGACATAAACGAGG
TGTTGTTGGTGGGGGGCATGACGCGTATGCCAAAGGTCCAGACCGTCGTG
GAGGACTTTTATGGGAGGAAGCCGAGCAAGGGGGTTAATCCCGATGAGGT
GGTGGCGATGGGCGCTGCGATTCAGGGAGGGGTGTTGCGGGGGGATGTGA
AGGATGTACTCTTGTTGGATGTCACACCCTTGTCCTTGGGCATTGAGACG
TTGGGAGGCATGTTCACCCGGCTGATCAATAGGAACACCACCATCCCGAC
TAAGAAGGGACAGGTCTTCTCGACGGCCGCGGATAACCAAAGCCAGGTGC
AGATTAAGGTGCTGCAAGGCGAGCGTGAGTTGGCGGCGGACAACAAGATG
CTGGGGTCGTTTGACTTGGTTGGGATTCCTCCGGCCCCCCGGGGACTGCC
GCAGATCGAGGTAACGTTTGACATCGACGCGGACGGGATTATGCATGTTA
GCGCCAAGGACAAGGGAACGGGGAAGGAACAGGCCATTGTGATCCAGTCA
TCAGGGGGATTGAACGAGGAGGAGATTCAGAACATGGTGAAGGATGCAGA
GTCTCACAAGGCGGCGGATGAGGAGCGAAAGAAGTTGATCGAGGCGCGGA
ATGAGGCCGATTCCCTAGTGTACTCGACGGAGAAGAGTCTGACTGAGCAC
GGGGCGAAGCTTGGGGAGGAAGTGAAGGAGGAGATCAACAAGACGATTGC
AGAGGCAAAGAAGGCATTGGAGGGGGAGAATGCGGAAGAGATCCAAGAGA
AGGTCAAGGCGCTGCAGCAGGCCGCCTTAAAAATTGGGGAGGCTATCTAT
GGAAAGGGCGGGGCAGGGGGAGGAGCGGCGGGAGGTGCGGCGGGAGGGGA
AGAAGGGAAGGAAGAGAACAAGGAGAATGTGCAAGATGCGGAGTTTAAGG
AGAAGGATGAGAAGGAGGAGAAGAAGTAAGATGGCGAATCTTGGTGAGAA
GGAAGGACGAGAGGTGAGGGTTATGTTGAGGGTGAGGTATCGGCGTGAAG
GAGGACGCAGACAAACAGACGTTGCCTGGTGTACAAGTGGGGCTGGGCAA
GCAAATCGATTTTGAGTCGCGTAAAGAGAGAGGAAAGAGGAGAAGAAAGC
ACTAAAATAACTACAAGAAGAAAAAGAGGAGGATGAGAGAGTAGAGGGTG
AGCGAGTTGTAAGGAAAAAGGGGGATTAGAGGAGGAGGAGGAGGAGGAAG
ATTGAGTGCAGATAGAATGCATGTGTTTTGTCTCACCTCCTTTTCGTGTG
TTGGGATGATGTGAGAGGAGTTGGTGGCGCGGTTAAAACTCAGGACACCA
GATGAAGAGGCTCAAGGACATGGCTGCGCCTTTTCGACCGCCTTCGGCTA
GCATTGCTTAAAGATGGAGGGCACAAAGAAAGAGGAAAATCGAAAAACGA
ATACTCATCCTTACTTTTCGCACTTCGTTTT back to topprotein sequence of jgi.p|Nanoce1779_2|539299 >mRNA_3463-protein ID=mRNA_3463-protein|Name=jgi.p|Nanoce1779_2|539299|organism=Nannochloropsis oceanica|type=polypeptide|length=684bp
MLSRLSVSARGISPSAVLRAGSQAGAVRNLTRSGAARQAQKDLGDIIGID
LGTTNSCVAIMEGRTPRVIENAEGARTTPSVVAFSNDGQRLVGLPAKRQA
VTNPENTLYAVKRLIGRKFTDKEVKGVKNLVPYKIIKADTSDDAWVEAGG
KRLSPSQVGSMVLGKMKETAESFLGRPITKAVVTVPAYFNDSQRQATKDA
GRIAGLDVQRIINEPTAAALAYGLDRAEGKLIAVFDLGGGTFDVSILEIS
GGVFEVKATNGDTMLGGEDFDEELLKHLAQEFRKDSGIDLSKDRLAMQRL
REAAEKAKRELDGLAQTDVSLPFITADQTGPKHLNVKISRAQFEKLVDGL
VQRTIQPCKSCLKDASVEKKDINEVLLVGGMTRMPKVQTVVEDFYGRKPS
KGVNPDEVVAMGAAIQGGVLRGDVKDVLLLDVTPLSLGIETLGGMFTRLI
NRNTTIPTKKGQVFSTAADNQSQVQIKVLQGERELAADNKMLGSFDLVGI
PPAPRGLPQIEVTFDIDADGIMHVSAKDKGTGKEQAIVIQSSGGLNEEEI
QNMVKDAESHKAADEERKKLIEARNEADSLVYSTEKSLTEHGAKLGEEVK
EEINKTIAEAKKALEGENAEEIQEKVKALQQAALKIGEAIYGKGGAGGGA
AGGAAGGEEGKEENKENVQDAEFKEKDEKEEKK* back to topmRNA from alignment at scaffold_6:389509..392250- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3463 ID=mRNA_3463|Name=jgi.p|Nanoce1779_2|539299|organism=Nannochloropsis oceanica|type=mRNA|length=2742bp|location=Sequence derived from alignment at scaffold_6:389509..392250- (Nannochloropsis oceanica)
AACAGGCATCCGTGTTACCAGAGCACCATGTTGTCTCGTCTATCAGTTTC
AGCCAGGGGGATTTCGGTACGTGCATAACACATCATCCCCGCTCATCATA
TCGTGGGATTCTCCTCCTTCCCCACCTCCCCTCCTCCCTCCCTCCGCGCT
ACCGCGCTTTCTCCAACCCCGCTCTCCGTGTCACTCACAATGTGTCCCAT
TCTCTCTCTTAACTCTCCGCTACACAGCCTTCGGCGGTTCTCCGTGCCGG
CAGCCAAGCGGGCGCCGTCCGCAACCTGACGCGAAGCGGGGCGGCCCGTC
AAGCGCAGAAGGACTTGGGAGACATCATCGGCATTGATCTCGGTACAACC
AACTCATGTGTGGCCATTATGGAGGGTCGCACGCCTCGTGTGATTGAGAA
TGCTGAAGGCGCGCGGACCACACCGTCGGTGGTGGCCTTCTCGAATGACG
GACAGCGTTTAGTGGGGCTGCCGGCAAAGCGACAGGCCGTGACCAACCCA
GAGAACACGCTGTATGCGGTCAAGCGTTTGATTGGCCGCAAATTTACTGA
TAAGGAGGTGAAAGGTGTGAAAAATCTAGTGCCGTACAAGATCATCAAGG
CGGATACCTCGGACGACGCATGGGTGGAGGCAGGGGGCAAGCGGTTGTCC
CCGTCTCAGGTGGGCTCTATGGTCCTGGGGAAGATGAAGGAGACGGCCGA
GAGTTTTTTGGGTCGACCGATCACAAAGGCGGTTGTGACCGTACCTGCTT
ACTTTAATGACTCGCAGCGGCAAGCGACAAAAGACGCGGGGAGGATCGCG
GGGTTGGATGTGCAGCGGATCATCAATGAACCGACGGCCGCGGCATTGGC
ATATGGGTTGGACCGTGCTGAGGGAAAGTTGATTGCGGTGTTTGACTTAG
GGGGTGGGACTTTCGACGTGTCGATTTTGGAGATTTCGGGAGGTGTATTT
GAGGTAAAAGCGACAAATGGCGATACGATGTTGGGGGGGGAAGACTTTGA
CGAGGAGCTGTTGAAGCACTTGGCGCAGGAGTTTAGGAAGGATAGTGGCA
TCGACTTGAGCAAGGACAGGTTGGCCATGCAGAGGCTGAGGGAGGCGGCG
GAGAAGGCGAAAAGAGAATTGGATGGCTTGGCCCAGACGGACGTGAGTCT
GCCATTTATCACCGCGGACCAGACGGGGCCGAAGCATTTGAACGTCAAGA
TCTCGCGCGCGCAGTTCGAGAAGCTGGTCGATGGGTTGGTGCAACGCACT
ATTCAGCCGTGCAAAAGCTGTCTGAAGGACGCGAGTGTTGAGAAGAAGGA
CATAAACGAGGTGTTGTTGGTGGGGGGCATGACGCGTATGCCAAAGGTCC
AGACCGTCGTGGAGGACTTTTATGGGAGGAAGCCGAGCAAGGGGGTTAAT
CCCGATGAGGTGGTGGCGATGGGCGCTGCGATTCAGGGAGGGGTGTTGCG
GGGGGATGTGAAGGATGTACTCTTGTTGGATGTCACACCCTTGTCCTTGG
GCATTGAGACGTTGGGAGGCATGTTCACCCGGCTGATCAATAGGAACACC
ACCATCCCGACTAAGAAGGGACAGGTCTTCTCGACGGCCGCGGATAACCA
AAGCCAGGTGCAGATTAAGGTGCTGCAAGGCGAGCGTGAGTTGGCGGCGG
ACAACAAGATGCTGGGGTCGTTTGACTTGGTTGGGATTCCTCCGGCCCCC
CGGGGACTGCCGCAGATCGAGGTAACGTTTGACATCGACGCGGACGGGAT
TATGCATGTTAGCGCCAAGGACAAGGGAACGGGGAAGGAACAGGCCATTG
TGATCCAGTCATCAGGGGGATTGAACGAGGAGGAGATTCAGAACATGGTG
AAGGATGCAGAGTCTCACAAGGCGGCGGATGAGGAGCGAAAGAAGTTGAT
CGAGGCGCGGAATGAGGCCGATTCCCTAGTGTACTCGACGGAGAAGAGTC
TGACTGAGCACGGGGCGAAGCTTGGGGAGGAAGTGAAGGAGGAGATCAAC
AAGACGATTGCAGAGGCAAAGAAGGCATTGGAGGGGGAGAATGCGGAAGA
GATCCAAGAGAAGGTCAAGGCGCTGCAGCAGGCCGCCTTAAAAATTGGGG
AGGCTATCTATGGAAAGGGCGGGGCAGGGGGAGGAGCGGCGGGAGGTGCG
GCGGGAGGGGAAGAAGGGAAGGAAGAGAACAAGGAGAATGTGCAAGATGC
GGAGTTTAAGGAGAAGGATGAGAAGGAGGAGAAGAAGTAAGATGGCGAAT
CTTGGTGAGAAGGAAGGACGAGAGGTGAGGGTTATGTTGAGGGTGAGGTA
TCGGCGTGAAGGAGGACGCAGACAAACAGACGTTGCCTGGTGTACAAGTG
GGGCTGGGCAAGCAAATCGATTTTGAGTCGCGTAAAGAGAGAGGAAAGAG
GAGAAGAAAGCACTAAAATAACTACAAGAAGAAAAAGAGGAGGATGAGAG
AGTAGAGGGTGAGCGAGTTGTAAGGAAAAAGGGGGATTAGAGGAGGAGGA
GGAGGAGGAAGATTGAGTGCAGATAGAATGCATGTGTTTTGTCTCACCTC
CTTTTCGTGTGTTGGGATGATGTGAGAGGAGTTGGTGGCGCGGTTAAAAC
TCAGGACACCAGATGAAGAGGCTCAAGGACATGGCTGCGCCTTTTCGACC
GCCTTCGGCTAGCATTGCTTAAAGATGGAGGGCACAAAGAAAGAGGAAAA
TCGAAAAACGAATACTCATCCTTACTTTTCGCACTTCGTTTT back to topCoding sequence (CDS) from alignment at scaffold_6:389509..392250- >mRNA_3463 ID=mRNA_3463|Name=jgi.p|Nanoce1779_2|539299|organism=Nannochloropsis oceanica|type=CDS|length=4104bp|location=Sequence derived from alignment at scaffold_6:389509..392250- (Nannochloropsis oceanica)
CCTTCGGCGGTTCTCCGTGCCGGCAGCCAAGCGGGCGCCGTCCGCAACCT
GACGCGAAGCGGGGCGGCCCGTCAAGCGCAGAAGGACTTGGGAGACATCA
TCGGCATTGATCTCGGTACAACCAACTCATGTGTGGCCATTATGGAGGGT
CGCACGCCTCGTGTGATTGAGAATGCTGAAGGCGCGCGGACCACACCGTC
GGTGGTGGCCTTCTCGAATGACGGACAGCGTTTAGTGGGGCTGCCGGCAA
AGCGACAGGCCGTGACCAACCCAGAGAACACGCTGTATGCGGTCAAGCGT
TTGATTGGCCGCAAATTTACTGATAAGGAGGTGAAAGGTGTGAAAAATCT
AGTGCCGTACAAGATCATCAAGGCGGATACCTCGGACGACGCATGGGTGG
AGGCAGGGGGCAAGCGGTTGTCCCCGTCTCAGGTGGGCTCTATGGTCCTG
GGGAAGATGAAGGAGACGGCCGAGAGTTTTTTGGGTCGACCGATCACAAA
GGCGGTTGTGACCGTACCTGCTTACTTTAATGACTCGCAGCGGCAAGCGA
CAAAAGACGCGGGGAGGATCGCGGGGTTGGATGTGCAGCGGATCATCAAT
GAACCGACGGCCGCGGCATTGGCATATGGGTTGGACCGTGCTGAGGGAAA
GTTGATTGCGGTGTTTGACTTAGGGGGTGGGACTTTCGACGTGTCGATTT
TGGAGATTTCGGGAGGTGTATTTGAGGTAAAAGCGACAAATGGCGATACG
ATGTTGGGGGGGGAAGACTTTGACGAGGAGCTGTTGAAGCACTTGGCGCA
GGAGTTTAGGAAGGATAGTGGCATCGACTTGAGCAAGGACAGGTTGGCCA
TGCAGAGGCTGAGGGAGGCGGCGGAGAAGGCGAAAAGAGAATTGGATGGC
TTGGCCCAGACGGACGTGAGTCTGCCATTTATCACCGCGGACCAGACGGG
GCCGAAGCATTTGAACGTCAAGATCTCGCGCGCGCAGTTCGAGAAGCTGG
TCGATGGGTTGGTGCAACGCACTATTCAGCCGTGCAAAAGCTGTCTGAAG
GACGCGAGTGTTGAGAAGAAGGACATAAACGAGGTGTTGTTGGTGGGGGG
CATGACGCGTATGCCAAAGGTCCAGACCGTCGTGGAGGACTTTTATGGGA
GGAAGCCGAGCAAGGGGGTTAATCCCGATGAGGTGGTGGCGATGGGCGCT
GCGATTCAGGGAGGGGTGTTGCGGGGGGATGTGAAGGATGTACTCTTGTT
GGATGTCACACCCTTGTCCTTGGGCATTGAGACGTTGGGAGGCATGTTCA
CCCGGCTGATCAATAGGAACACCACCATCCCGACTAAGAAGGGACAGGTC
TTCTCGACGGCCGCGGATAACCAAAGCCAGGTGCAGATTAAGGTGCTGCA
AGGCGAGCGTGAGTTGGCGGCGGACAACAAGATGCTGGGGTCGTTTGACT
TGGTTGGGATTCCTCCGGCCCCCCGGGGACTGCCGCAGATCGAGGTAACG
TTTGACATCGACGCGGACGGGATTATGCATGTTAGCGCCAAGGACAAGGG
AACGGGGAAGGAACAGGCCATTGTGATCCAGTCATCAGGGGGATTGAACG
AGGAGGAGATTCAGAACATGGTGAAGGATGCAGAGTCTCACAAGGCGGCG
GATGAGGAGCGAAAGAAGTTGATCGAGGCGCGGAATGAGGCCGATTCCCT
AGTGTACTCGACGGAGAAGAGTCTGACTGAGCACGGGGCGAAGCTTGGGG
AGGAAGTGAAGGAGGAGATCAACAAGACGATTGCAGAGGCAAAGAAGGCA
TTGGAGGGGGAGAATGCGGAAGAGATCCAAGAGAAGGTCAAGGCGCTGCA
GCAGGCCGCCTTAAAAATTGGGGAGGCTATCTATGGAAAGGGCGGGGCAG
GGGGAGGAGCGGCGGGAGGTGCGGCGGGAGGGGAAGAAGGGAAGGAAGAG
AACAAGGAGAATGTGCAAGATGCGGAGTTTAAGGAGAAGGATGAGAAGGA
GGAGAAGAAGTAAATGTTGTCTCGTCTATCAGTTTCAGCCAGGGGGATTT
CGCCTTCGGCGGTTCTCCGTGCCGGCAGCCAAGCGGGCGCCGTCCGCAAC
CTGACGCGAAGCGGGGCGGCCCGTCAAGCGCAGAAGGACTTGGGAGACAT
CATCGGCATTGATCTCGGTACAACCAACTCATGTGTGGCCATTATGGAGG
GTCGCACGCCTCGTGTGATTGAGAATGCTGAAGGCGCGCGGACCACACCG
TCGGTGGTGGCCTTCTCGAATGACGGACAGCGTTTAGTGGGGCTGCCGGC
AAAGCGACAGGCCGTGACCAACCCAGAGAACACGCTGTATGCGGTCAAGC
GTTTGATTGGCCGCAAATTTACTGATAAGGAGGTGAAAGGTGTGAAAAAT
CTAGTGCCGTACAAGATCATCAAGGCGGATACCTCGGACGACGCATGGGT
GGAGGCAGGGGGCAAGCGGTTGTCCCCGTCTCAGGTGGGCTCTATGGTCC
TGGGGAAGATGAAGGAGACGGCCGAGAGTTTTTTGGGTCGACCGATCACA
AAGGCGGTTGTGACCGTACCTGCTTACTTTAATGACTCGCAGCGGCAAGC
GACAAAAGACGCGGGGAGGATCGCGGGGTTGGATGTGCAGCGGATCATCA
ATGAACCGACGGCCGCGGCATTGGCATATGGGTTGGACCGTGCTGAGGGA
AAGTTGATTGCGGTGTTTGACTTAGGGGGTGGGACTTTCGACGTGTCGAT
TTTGGAGATTTCGGGAGGTGTATTTGAGGTAAAAGCGACAAATGGCGATA
CGATGTTGGGGGGGGAAGACTTTGACGAGGAGCTGTTGAAGCACTTGGCG
CAGGAGTTTAGGAAGGATAGTGGCATCGACTTGAGCAAGGACAGGTTGGC
CATGCAGAGGCTGAGGGAGGCGGCGGAGAAGGCGAAAAGAGAATTGGATG
GCTTGGCCCAGACGGACGTGAGTCTGCCATTTATCACCGCGGACCAGACG
GGGCCGAAGCATTTGAACGTCAAGATCTCGCGCGCGCAGTTCGAGAAGCT
GGTCGATGGGTTGGTGCAACGCACTATTCAGCCGTGCAAAAGCTGTCTGA
AGGACGCGAGTGTTGAGAAGAAGGACATAAACGAGGTGTTGTTGGTGGGG
GGCATGACGCGTATGCCAAAGGTCCAGACCGTCGTGGAGGACTTTTATGG
GAGGAAGCCGAGCAAGGGGGTTAATCCCGATGAGGTGGTGGCGATGGGCG
CTGCGATTCAGGGAGGGGTGTTGCGGGGGGATGTGAAGGATGTACTCTTG
TTGGATGTCACACCCTTGTCCTTGGGCATTGAGACGTTGGGAGGCATGTT
CACCCGGCTGATCAATAGGAACACCACCATCCCGACTAAGAAGGGACAGG
TCTTCTCGACGGCCGCGGATAACCAAAGCCAGGTGCAGATTAAGGTGCTG
CAAGGCGAGCGTGAGTTGGCGGCGGACAACAAGATGCTGGGGTCGTTTGA
CTTGGTTGGGATTCCTCCGGCCCCCCGGGGACTGCCGCAGATCGAGGTAA
CGTTTGACATCGACGCGGACGGGATTATGCATGTTAGCGCCAAGGACAAG
GGAACGGGGAAGGAACAGGCCATTGTGATCCAGTCATCAGGGGGATTGAA
CGAGGAGGAGATTCAGAACATGGTGAAGGATGCAGAGTCTCACAAGGCGG
CGGATGAGGAGCGAAAGAAGTTGATCGAGGCGCGGAATGAGGCCGATTCC
CTAGTGTACTCGACGGAGAAGAGTCTGACTGAGCACGGGGCGAAGCTTGG
GGAGGAAGTGAAGGAGGAGATCAACAAGACGATTGCAGAGGCAAAGAAGG
CATTGGAGGGGGAGAATGCGGAAGAGATCCAAGAGAAGGTCAAGGCGCTG
CAGCAGGCCGCCTTAAAAATTGGGGAGGCTATCTATGGAAAGGGCGGGGC
AGGGGGAGGAGCGGCGGGAGGTGCGGCGGGAGGGGAAGAAGGGAAGGAAG
AGAACAAGGAGAATGTGCAAGATGCGGAGTTTAAGGAGAAGGATGAGAAG
GAGGAGAAGAAGTAAATGTTGTCTCGTCTATCAGTTTCAGCCAGGGGGAT
TTCG back to top
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