jgi.p|Nanoce1779_2|582201, mRNA_3462 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582201
Unique NamemRNA_3462
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1038
Alignment locationscaffold_6:388114..389508 -

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Properties
Property NameValue
TranscriptId582287
TrackFilteredModels2
ProteinId582201
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:388114..389508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582201gene_3462Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582201mRNA_3462-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3462CDS_3462Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3462 ID=mRNA_3462|Name=jgi.p|Nanoce1779_2|582201|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
TGTTTGGATGTTGTTTTGTTGCTTTGTTTCTTGTGCTGTTATCAAAGTCT
AGCTTGCGAAATCGGGAAAGCCATTGTGTGGGGATCGAAGCGAAGGCGCG
CATCACAAGAGCTGCTGTTATCTTCCGTCATATTGCTTACTGCTGCCATC
TTTGTCGCTTTCATCCACTGTGCCACACACCCGACACCTAGCCTTAACAT
GCCCACAGTCATGGTGACATATCCTCTTGGTCGTGGTAGGCATGCTGTTG
CACCAGGGCGGGCTTATCTAACCGGTGCGGCAAGCCAAAGCAGACTTCTT
ACTCGTTATGATCTCCCCGTGACTCTGCGCAATGCTCACATGAGCACCAA
GCATACCGTACACATAACCAACCAGACTCTCAACCATCCCTCCATCATAT
ACAGGGCAATAACCATGGGCGGGGGTAGGTGGTTCTACTTCCCGACGCAC
ATCTGGACGCCCTCGGGCGGGTGGTTTGCCAGCCCCAAGAACTGGAAGGC
CAATACCTTGGTAGCCCTTGGCGGCATTGGCCTGGCCGCCTTGTCCACCT
TCTCCTTCTCTGCATCCTTGGAGCGGCGACCAATTGCACCAGCCTGGCAC
ATTCCCTCGCAGTCATGGTGCAAACACGCGGAGGAAGATGACGACTCCCT
TTAAGATTAAGCGACGGAGAAGAACGATGTATTTCATGAAGGAGAGCGTG
GAGGGAGGATCTCGATAAGCACGCACTATGAAGCTTTTCATGATGGCAGA
GAAGGATGTGTGCACGTTTGTGCGAGTGTGTCGTGCGTGTGAAGAACTTA
GAAATGTGTCGATGACCTGACCGATGGGAGAGTACTAAAAGAAGCAAAAC
GATGACTATCGATGAACATTCGAGTTGGACGCCGCGAAGGATCTTTAAAT
TGATTCCAATGAATGCATTTGCAATTTTGTGGGCCGTCCGGGGACTTTGC
CTGATGAAAAACCTGTCAAAGTCGCTAGTAAAACTCGGACAAAAATAAGG
GGCGAATAGGCAACAATTTTTTGTTGGAAGGCTCGCCC
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protein sequence of jgi.p|Nanoce1779_2|582201

>mRNA_3462-protein ID=mRNA_3462-protein|Name=jgi.p|Nanoce1779_2|582201|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MPTVMVTYPLGRGRHAVAPGRAYLTGAASQSRLLTRYDLPVTLRNAHMST
KHTVHITNQTLNHPSIIYRAITMGGGRWFYFPTHIWTPSGGWFASPKNWK
ANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEEDDDS
L*
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mRNA from alignment at scaffold_6:388114..389508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3462 ID=mRNA_3462|Name=jgi.p|Nanoce1779_2|582201|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp|location=Sequence derived from alignment at scaffold_6:388114..389508- (Nannochloropsis oceanica)
TGTTTGGATGTTGTTTTGTTGCTTTGTTTCTTGTGCTGTTATCAAAGTCT
AGCTTGCGAAATCGGGAAAGCCATTGTGTGGGGATCGAAGCGAAGGCGCG
CATCACAAGAGCTGCTGTTATCTTCCGTCATATTGCTTACTGCTGCCATC
TTTGTCGCTTTCATCCACTGTGCCACACACCCGACACCTAGCCTTAACAT
GCCCACAGTCATGGTGACATATCCTCTTGGTCGTGGTAGGCATGCTGTTG
CACCAGGGCGGGCTTATCTAACCGGTGCGGCAAGCCAAAGCAGACTTCTT
ACTCGTTATGATCTCCCCGTGACTCTGCGCAATGCTCACATGAGCACCAA
GCATACCGTACACATAACCAACCAGACTCTCAACCATCCCTCCATCATAT
ACAGGGCAATAACCATGGGCGGGGGTAGGTGGTTCTACTTCCCGACGCAC
ATCTGGACGCCCTCGGGCGGGTGGTTTGCCAGCCCCAAGAACTGGAAGGC
CAATACCTTGGTAGCCCTTGGCGGCATTGGCCTGGCCGCCTTGTCCACCT
TCTCCTTCTCTGCATCCTTGGAGGTAAGCAGTTTGAATGGGATGAATTGA
TTGGCGTGCGGGGGTAGCGAAAGCAGGGCTGAGAGTGAGTGCGCGCGATC
GCGTGTGAGCCGGGCTTCCCCGCGAGGGTGGCGAGAGAGAAGAATGATGA
GGAAATGGTTACGGCTTTTTTGAGAGAATGGGATCGGCGAGACCTATCCC
TTCGTTTGAGTGCAAGTCATGGTAATACGTTCTCTTAGGACCCATTTTGT
GATACGCCGCATGCATCACTGCACGTGAGAAGACGGAGGACGCAGGAAGA
GAGGTGAAAGACGATACACGTAAGCACACAACATAAACTCAATCCGCTTC
GACGACCCACACAAAAACACACGACCACAGCGGCGACCAATTGCACCAGC
CTGGCACATTCCCTCGCAGTCATGGTGCAAACACGCGGAGGAAGATGACG
ACTCCCTTTAAGATTAAGCGACGGAGAAGAACGATGTATTTCATGAAGGA
GAGCGTGGAGGGAGGATCTCGATAAGCACGCACTATGAAGCTTTTCATGA
TGGCAGAGAAGGATGTGTGCACGTTTGTGCGAGTGTGTCGTGCGTGTGAA
GAACTTAGAAATGTGTCGATGACCTGACCGATGGGAGAGTACTAAAAGAA
GCAAAACGATGACTATCGATGAACATTCGAGTTGGACGCCGCGAAGGATC
TTTAAATTGATTCCAATGAATGCATTTGCAATTTTGTGGGCCGTCCGGGG
ACTTTGCCTGATGAAAAACCTGTCAAAGTCGCTAGTAAAACTCGGACAAA
AATAAGGGGCGAATAGGCAACAATTTTTTGTTGGAAGGCTCGCCC
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Coding sequence (CDS) from alignment at scaffold_6:388114..389508-

>mRNA_3462 ID=mRNA_3462|Name=jgi.p|Nanoce1779_2|582201|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_6:388114..389508- (Nannochloropsis oceanica)
CGGCGACCAATTGCACCAGCCTGGCACATTCCCTCGCAGTCATGGTGCAA
ACACGCGGAGGAAGATGACGACTCCCTTTAAATGCCCACAGTCATGGTGA
CATATCCTCTTGGTCGTGGTAGGCATGCTGTTGCACCAGGGCGGGCTTAT
CTAACCGGTGCGGCAAGCCAAAGCAGACTTCTTACTCGTTATGATCTCCC
CGTGACTCTGCGCAATGCTCACATGAGCACCAAGCATACCGTACACATAA
CCAACCAGACTCTCAACCATCCCTCCATCATATACAGGGCAATAACCATG
GGCGGGGGTAGGTGGTTCTACTTCCCGACGCACATCTGGACGCCCTCGGG
CGGGTGGTTTGCCAGCCCCAAGAACTGGAAGGCCAATACCTTGGTAGCCC
TTGGCGGCATTGGCCTGGCCGCCTTGTCCACCTTCTCCTTCTCTGCATCC
TTGGAGCGGCGACCAATTGCACCAGCCTGGCACATTCCCTCGCAGTCATG
GTGCAAACACGCGGAGGAAGATGACGACTCCCTTTAAATGCCCACAGTCA
TGGTGACATATCCTCTTGGTCGTGGTAGGCATGCTGTTGCACCAGGGCGG
GCTTATCTAACCGGTGCGGCAAGCCAAAGCAGACTTCTTACTCGTTATGA
TCTCCCCGTGACTCTGCGCAATGCTCACATGAGCACCAAGCATACCGTAC
ACATAACCAACCAGACTCTCAACCATCCCTCCATCATATACAGGGCAATA
ACCATGGGCGGGGGTAGGTGGTTCTACTTCCCGACGCACATCTGGACGCC
CTCGGGCGGGTGGTTTGCCAGCCCCAAGAACTGGAAGGCCAATACCTTGG
TAGCCCTTGGCGGCATTGGCCTGGCCGCCTTGTCCACCTTCTCCTTCTCT
GCATCCTTGGAG
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Synonyms
Publications