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Properties
| Property Name | Value |
|---|
| TranscriptId | 582284 |
| Track | FilteredModels2 |
| ProteinId | 582198 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:385418..388099 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3461 ID=mRNA_3461|Name=jgi.p|Nanoce1779_2|582198|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp
TAGAGGAGGTCAGGTTGCATGCGATAGTTCTAGAGGGATGTAGGAACAGC
AGAAAAAAAGAACCAAACGAGGCAAAGTTGTGATTGATTGATGTGATTGT
GATTGTGATTTTGTGATTTTGTGATGTGATCACCTCTGTGATGTGACGTG
ATGTGATGTGATGTGATGTGCTCTCATCATTAAATGCGCAAGATGGTCAG
AATGAGTGCTCACAAACCATTTCCTCACGCCTAGACACTTGCGCCCGACC
CACCAGCCACTACATACATCATCTACATCATAGTAACAACAAGGACAATA
GTTCCCTCTTGCAACCAAGGAGCCACTCCCTGATCGTCTACGCATCCTCA
ACATATCAGTATATCAGTATCAGTTAGAGCTTTGTACAATTACAAATTAG
CACCATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAA
TTAGCGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGC
TTTTCTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCC
AAACAAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCG
CTGGTACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCAC
TCCAACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCAGTTTTCGA
CAAACTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAG
GACACGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAG
GGCGACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCAT
GCTGTCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGC
TAGCCACAGGCGCTGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCCGTG
GCCTCCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTTGTT
CTGCGCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAACGGG
CGTTTGAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCGCTG
GATTGGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGCCGA
GGTCTTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGATTG
CAATGGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATTGCG
GGGGCATACGACATGGCCGATTATGTAATGAGCGCGAACATGACCGAGGC
TGACACAGAGGAGGGCATCGCAGCCTTTGTCGAGAAGCGACCGCCGGCGT
GGGATTTGTAGAAGTTGAGAAGCGTGGTAAAATGACGGCTATGTTTTGTG
GTAGATCATCGATCGTGTGTGTGCCTGTATACAGGATGTACAAGGGGGAG
GAGGTTATAGTTTGTAGGGGGCGGGGGGGATCCGCTGAGTTTTTTGTAGA
TAATGAAAGCATGCGAATAGAAATTATGCACGGGGTTATGGCCAGGATGA
TGAAGACGATCGTGGCGATGTGGCCGTGTATTAATTTTACGTGCTTTGGC
TCGTGAAGAAGAAACAAGTCCCGAAACCAAGCTAGCTGCCGCCTTGGGCC
TTGTTTTGTTGTGCCATTTTTGCAATTGTAGTCATATGCTGGATACAAGT
GTTTGAAACCCCCTACAAGTAGTGCCTTCCTCTACTATAGGTACAGTATA
TGCCAAGCTCTGACCTGTACTGCGGCATTTCCC back to topprotein sequence of jgi.p|Nanoce1779_2|582198 >mRNA_3461-protein ID=mRNA_3461-protein|Name=jgi.p|Nanoce1779_2|582198|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MLLMPRIFRTAASSTISVIHRPTTPLLPLLPRFSLSLSSSAASSPSHDPN
KEPDAPPVLVERRSVAGTHGGYLVVTLNRPRHSNAMSTAILHDLQAVFDK
LPTDKWVRAVVLTGTGHAFCGGHDLYQMHDSQGDKKYFERMFAKCSRFML
SIQRVPQPVVAAVNGLATGAGCQLVAACDLAVASSRAEFGTSGVKLGLFC
ATPSVPLSRNLSRKRAFEMLVTGEYINADKALDWGLVNKVCDHEKLDAEV
LRLVTEIVKNPAVAIAMGKRLFYSQLEKSSIAGAYDMADYVMSANMTEAD
TEEGIAAFVEKRPPAWDL* back to topmRNA from alignment at scaffold_6:385418..388099- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3461 ID=mRNA_3461|Name=jgi.p|Nanoce1779_2|582198|organism=Nannochloropsis oceanica|type=mRNA|length=2682bp|location=Sequence derived from alignment at scaffold_6:385418..388099- (Nannochloropsis oceanica)
TAGAGGAGGTCAGGTTGCATGCGATAGTTCTAGAGGGATGTAGGAACAGC
AGAAAAAAAGAACCAAACGAGGCAAAGTTGTGATTGATTGATGTGATTGT
GATTGTGATTTTGTGATTTTGTGATGTGATCACCTCTGTGATGTGACGTG
ATGTGATGTGATGTGATGTGCTCTCATCATTAAATGCGCAAGATGGTCAG
AATGAGTGCTCACAAACCATTTCCTCACGCCTAGACACTTGCGCCCGACC
CACCAGCCACTACATACATCATCTACATCATAGTAACAACAAGGACAATA
GTTCCCTCTTGCAACCAAGGAGCCACTCCCTGATCGTCTACGCATCCTCA
ACATATCAGTATATCAGTATCAGTGTAAGTGGAGAGCTAACGTCTCTGAC
CCCTATCCCCCCCTTTGAAGCATCGAGACATGTTATGTCTATCCCACGCA
CGTGCACCCCCAAGAATTCGTAATGGGGTATCGCGTTATATGCTGCGTCG
GTTATATGCCAATCACCGCGCCTCCCGTCCCCCTGACACCCCCTACCCTC
CCCTTGACTCCCCCGGACACCTTGATGCCCCTCTCCTAGTCCTCCTGTCC
TCTGTCCTTCCTGCCTCCCACTCGCGCATCTCCAACAGCCCGATGCCAGG
CATGATTTTCTATCCTGCGTCGGGTATAGAGAGATTGCAACAGAAACTCT
CTACATGACTGCTTCTGACCTCCGCAAATGCTTTGCGCCACTATAAGCTG
ACGGGGGATTGATGCAGTCACACATTCCCATTCTTACAACGAGGCAGGCA
CGACTTACTTTGCCTCTATCATCTTTTTTCTGTTCTTGACTGTCATTATC
TGCCTCATTTATGATCACGATGTACAACACCATATAGGTATTAATACTCC
CTTCTTTTTTTCAACTTCAATCCAGTCCTCATCCTCGCTCCTCTCCACCC
CTCCATCTCTCCAAAGTAGAGCTTTGTACAATTACAAATTAGCACCATGC
TACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAATTAGCGTG
ATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGCTTTTCTCT
CTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCCAAACAAAG
AACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCGCTGGTACC
CACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCACTCCAACGC
CATGAGCACAGCGATCCTTCACGACCTCCAAGCAGTTTTCGACAAACTCC
CGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAGGACACGCC
TTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAGGGCGACAA
GAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCATGCTGTCGA
TCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGCTAGCCACA
GGCGCTGGTAAGTCTCGGCGTGTGTCTTCGTTTCATTTGTTTAGTAAAAT
ATTGCAGGTATTTGACTGTCACCTACCATATAATCACTTCGTATCTCACC
TCTTGAAACGTCTGTCCTTTTCTCACTCCCTCCCAACCATGCCTCCCTCC
CCTCCACCAGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCCGTGGCCTC
CTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTTGTTCTGCG
CCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAACGGGCGTTT
GAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCGCTGGATTG
GGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGCCGAGGTCT
TGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGATTGCAATG
GGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATTGCGGGGGC
ATGTAAGCACTTGCTTGAAGGGAGGCAGAGGGTGGCTGAGAGGACGGGAA
GAGGGATAGAAGACAGGAAGATGCTGCCAAGCTTGTCTGTGCTGTCATTT
TTATATGTTCATTTTCCTTTTGCTCCTCTTCCTTCCACCCGACACTTAAT
TCCCAGACGACATGGCCGATTATGTAATGAGCGCGAACATGACCGAGGCT
GACACAGAGGAGGGCATCGCAGCCTTTGTCGAGAAGCGACCGCCGGCGTG
GGATTTGTAGAAGTTGAGAAGCGTGGTAAAATGACGGCTATGTTTTGTGG
TAGATCATCGATCGTGTGTGTGCCTGTATACAGGATGTACAAGGGGGAGG
AGGTTATAGTTTGTAGGGGGCGGGGGGGATCCGCTGAGTTTTTTGTAGAT
AATGAAAGCATGCGAATAGAAATTATGCACGGGGTTATGGCCAGGATGAT
GAAGACGATCGTGGCGATGTGGCCGTGTATTAATTTTACGTGCTTTGGCT
CGTGAAGAAGAAACAAGTCCCGAAACCAAGCTAGCTGCCGCCTTGGGCCT
TGTTTTGTTGTGCCATTTTTGCAATTGTAGTCATATGCTGGATACAAGTG
TTTGAAACCCCCTACAAGTAGTGCCTTCCTCTACTATAGGTACAGTATAT
GCCAAGCTCTGACCTGTACTGCGGCATTTCCC back to topCoding sequence (CDS) from alignment at scaffold_6:385418..388099- >mRNA_3461 ID=mRNA_3461|Name=jgi.p|Nanoce1779_2|582198|organism=Nannochloropsis oceanica|type=CDS|length=2871bp|location=Sequence derived from alignment at scaffold_6:385418..388099- (Nannochloropsis oceanica)
ACGACATGGCCGATTATGTAATGAGCGCGAACATGACCGAGGCTGACACA
GAGGAGGGCATCGCAGCCTTTGTCGAGAAGCGACCGCCGGCGTGGGATTT
GTAGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCCGTGGCCTCCTCGCG
GGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTTGTTCTGCGCCACCC
CCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAACGGGCGTTTGAAATG
CTCGTTACGGGAGAGTACATCAATGCGGACAAGGCGCTGGATTGGGGTTT
GGTGAACAAAGTGTGTGACCATGAGAAATTGGATGCCGAGGTCTTGAGGC
TCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGATTGCAATGGGCAAG
CGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATTGCGGGGGCATATGC
TACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAATTAGCGTG
ATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGCTTTTCTCT
CTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCCAAACAAAG
AACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCGCTGGTACC
CACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCACTCCAACGC
CATGAGCACAGCGATCCTTCACGACCTCCAAGCAGTTTTCGACAAACTCC
CGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAGGACACGCC
TTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAGGGCGACAA
GAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCATGCTGTCGA
TCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGCTAGCCACA
GGCGCTGACGACATGGCCGATTATGTAATGAGCGCGAACATGACCGAGGC
TGACACAGAGGAGGGCATCGCAGCCTTTGTCGAGAAGCGACCGCCGGCGT
GGGATTTGTAGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCCGTGGCCT
CCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTTGTTCTGC
GCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAACGGGCGTT
TGAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCGCTGGATT
GGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGCCGAGGTC
TTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGATTGCAAT
GGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATTGCGGGGG
CATATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAAT
TAGCGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGCT
TTTCTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCCA
AACAAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCGC
TGGTACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCACT
CCAACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCAGTTTTCGAC
AAACTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAGG
ACACGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAGG
GCGACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCATG
CTGTCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGCT
AGCCACAGGCGCTGACGACATGGCCGATTATGTAATGAGCGCGAACATGA
CCGAGGCTGACACAGAGGAGGGCATCGCAGCCTTTGTCGAGAAGCGACCG
CCGGCGTGGGATTTGTAGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCC
GTGGCCTCCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTT
GTTCTGCGCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAAC
GGGCGTTTGAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCG
CTGGATTGGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGC
CGAGGTCTTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGA
TTGCAATGGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATT
GCGGGGGCATATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCA
GTACAATTAGCGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTC
CCGCGCTTTTCTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCA
CGACCCAAACAAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGAT
CGGTCGCTGGTACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCC
CGGCACTCCAACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCAGT
TTTCGACAAACTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGG
GGACAGGACACGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACGAC
TCCCAGGGCGACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCG
GTTCATGCTGTCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTA
ACGGGCTAGCCACAGGCGCTG back to top
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