jgi.p|Nanoce1779_2|577057, mRNA_346 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577057
Unique Name	mRNA_346
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1284
Alignment location	scaffold_3:849906..851585 +

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Properties


Property Name	Value
TranscriptId	577143
Track	FilteredModels2
ProteinId	577057

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:849906..851585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577057	gene_346	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577057	mRNA_346-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_346	CDS_346	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:849906..851585+
coding sequence from alignment at scaffold_3:849906..851585+

mRNA sequence

>mRNA_346 ID=mRNA_346|Name=jgi.p|Nanoce1779_2|577057|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp
AGTTCATAACAAGATTTGTCGTCAGCCAATCATGAGGTCAACAACACTCG
GCGGGCTTCTTCTTTGCTGCATCAGTTCGACCACCACTGCCTTTGTCCTC
CCCAAACCCCTCAGCCTTGCCACCACCGCTACCCGACAACAAGCTCAATT
ACAGCAAGGATGCAAGACTGCCAGCGTGCAGGGGATGGGCTTGGCAAGGG
CCTTGACAGTGCTGCGGGATGCGGAGCAAAGCGGCGAGAAGGCGGTGGGC
ACCGACGTGCCCTTTGAGCTTCGCGGGTTCTCCCTCGCCACCGTGGGCCT
GGCCCTGGGTGGCCTCATCACAATTGGCAGTCTCGCTGAGTACCTGATCA
GTTCTGGCTCGGAGGGTCTGTCAGGCGTCGGCTTTGTGTACGGCATCCCC
ATTCTCCTAATTGGTCTTTCCTTACAGTACGCACAGTTGAACCCCGTTCC
CGTCGAGAGCACTCCCGAAGCCGACCGTGTATACGAAGCCAAGGCCACCC
CCATCATCCAAAAAGTCAAGAAGGACGTAACCCGTCACCGGTACGGAGAC
GACGCCCACCTTGACACGACTGTTCAAGCCCTCGGGCTGGTGATGCCTAA
CAAGGAATTTCCCCAATTGCAATACTTGAAGCAGGGAGTGGAGAATGGCG
AGCTGACTTTCTCGATGGTGTTTAAGAGTGATGATACTCCCTACCGGTTG
TGGGTGGAGCCTGAACGGATTGCTCGGTACGACAAATTTTTTGGCCCTGG
CGTGTGGTCGACTGTGGAAAAAGTTGATGCGGAAAGGCGTCTCGTGGCTA
TCAAACTCATTACAGGCGAGAGACCAGAGTCAGCAGCGGAGCCCAAGCAA
GAGGAGGCTGAGACGGAGGCGGCTTCTACGCCTGCGTCTGCATAGGCGGA
CAACTTGAGGGAAGAGCGATAATTTCCGTTATGTGAACCCTTTCCCACCT
CTTTTTTACTCCATCTGCTCCTTTCAGAACTCTGTCTTCCACTGGCATCG
TGTGTCTTGTGTCTGAATAGCCAAAATTTGTGATCGTATGACCCCAAGTG
TGCGTGTGTGTATGTGCCTCCTCGGGTCGGCTTTTCCGCGCCTATTTCTT
ATGCTCGGCTTCACATCCTAGCAGGACAAGCAGAACAACACCAGTATCGA
CACCAGTTACATCAATTTGGGCGTAAGTGTGCGAAAGAGAGGATGTGTGT
GTGTGTGTGTGTGTGTGTATGTGTGTATCCTATGGACATCTCTATTATAA
TAATAGAGGCAAAAACTACACACAAGCGATCCTG

protein sequence of jgi.p|Nanoce1779_2|577057

>mRNA_346-protein ID=mRNA_346-protein|Name=jgi.p|Nanoce1779_2|577057|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MRSTTLGGLLLCCISSTTTAFVLPKPLSLATTATRQQAQLQQGCKTASVQ
GMGLARALTVLRDAEQSGEKAVGTDVPFELRGFSLATVGLALGGLITIGS
LAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRV
YEAKATPIIQKVKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLK
QGVENGELTFSMVFKSDDTPYRLWVEPERIARYDKFFGPGVWSTVEKVDA
ERRLVAIKLITGERPESAAEPKQEEAETEAASTPASA*

mRNA from alignment at scaffold_3:849906..851585+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_346 ID=mRNA_346|Name=jgi.p|Nanoce1779_2|577057|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp|location=Sequence derived from alignment at scaffold_3:849906..851585+ (Nannochloropsis oceanica)
AGTTCATAACAAGATTTGTCGTCAGCCAATCATGAGGTCAACAACACTCG
GCGGGCTTCTTCTTTGCTGCATCAGTTCGACCACCACTGCCTTTGTCCTC
CCCAAACCCCTCAGCCTTGCCACCACCGCTACCCGACAACAAGCTCAATT
ACAGCAAGGATGCAAGACTGCCAGCGTGCAGGGGATGGGCTTGGCAAGGT
GAGGCAGGCTTGAAAGTTGCGATCGGGGTGTGACGTTGACGGGTTCAGAC
ATTACCACAGAATGTGTCTCACCTCACACCACTACGCGTACACACAACTT
TGAAAGGGCCTTGACAGTGCTGCGGGATGCGGAGCAAAGCGGCGAGAAGG
CGGTGGGCACCGACGTGCCCTTTGAGCTTCGCGGGTTCTCCCTCGCCACC
GTGGGCCTGGCCCTGGGTGGCCTCATCACAATTGGCAGTCTCGCTGAGGT
ACGTCCAAAGCCGATGAGACATGGACAATGGGTTTCAAGAAGAACTATTA
CCTTCAGCAAATGATCCTTCAATTTTTTCTTCTTGTTCCTTGCAATGTGG
CTACGCAACGACTTTTGGCTTCACCCTTCTCCCTCCCCCTCCTCACTCCC
CTCAGTACCTGATCAGTTCTGGCTCGGAGGGTCTGTCAGGCGTCGGCTTT
GTGTACGGCATCCCCATTCTCCTAATTGGTCTTTCCTTACAGTACGCACA
GTTGAACCCCGTTCCCGTCGAGGTATGTTAAAAAAAGAAAGCGAAACAAA
ACAAGAAGATGCAGTCGAAATTATGATCAAACGAAATTTCACATTCTTTT
TACACTGTCATGCCCTCACACTCTCTCTGTTTCTACTTCTCTCTCTTCAT
CAGAGCACTCCCGAAGCCGACCGTGTATACGAAGCCAAGGCCACCCCCAT
CATCCAAAAAGTCAAGAAGGACGTAACCCGTCACCGGTACGGAGACGACG
CCCACCTTGACACGACTGTTCAAGCCCTCGGGCTGGTGATGCCTAACAAG
GAATTTCCCCAATTGCAATACTTGAAGCAGGGAGTGGAGAATGGCGAGCT
GACTTTCTCGATGGTGTTTAAGAGTGATGATACTCCCTACCGGTTGTGGG
TGGAGCCTGAACGGATTGCTCGGTACGACAAATTTTTTGGCCCTGGCGTG
TGGTCGACTGTGGAAAAAGTTGATGCGGAAAGGCGTCTCGTGGCTATCAA
ACTCATTACAGGCGAGAGACCAGAGTCAGCAGCGGAGCCCAAGCAAGAGG
AGGCTGAGACGGAGGCGGCTTCTACGCCTGCGTCTGCATAGGCGGACAAC
TTGAGGGAAGAGCGATAATTTCCGTTATGTGAACCCTTTCCCACCTCTTT
TTTACTCCATCTGCTCCTTTCAGAACTCTGTCTTCCACTGGCATCGTGTG
TCTTGTGTCTGAATAGCCAAAATTTGTGATCGTATGACCCCAAGTGTGCG
TGTGTGTATGTGCCTCCTCGGGTCGGCTTTTCCGCGCCTATTTCTTATGC
TCGGCTTCACATCCTAGCAGGACAAGCAGAACAACACCAGTATCGACACC
AGTTACATCAATTTGGGCGTAAGTGTGCGAAAGAGAGGATGTGTGTGTGT
GTGTGTGTGTGTGTATGTGTGTATCCTATGGACATCTCTATTATAATAAT
AGAGGCAAAAACTACACACAAGCGATCCTG

Coding sequence (CDS) from alignment at scaffold_3:849906..851585+

>mRNA_346 ID=mRNA_346|Name=jgi.p|Nanoce1779_2|577057|organism=Nannochloropsis oceanica|type=CDS|length=3456bp|location=Sequence derived from alignment at scaffold_3:849906..851585+ (Nannochloropsis oceanica)
ATGAGGTCAACAACACTCGGCGGGCTTCTTCTTTGCTGCATCAGTTCGAC
CACCACTGCCTTTGTCCTCCCCAAACCCCTCAGCCTTGCCACCACCGCTA
CCCGACAACAAGCTCAATTACAGCAAGGATGCAAGACTGCCAGCGTGCAG
GGGATGGGCTTGGCAAGGGCCTTGACAGTGCTGCGGGATGCGGAGCAAAG
CGGCGAGAAGGCGGTGGGCACCGACGTGCCCTTTGAGCTTCGCGGGTTCT
CCCTCGCCACCGTGGGCCTGGCCCTGGGTGGCCTCATCACAATTGGCAGT
CTCGCTGAGTACCTGATCAGTTCTGGCTCGGAGGGTCTGTCAGGCGTCGG
CTTTGTGTACGGCATCCCCATTCTCCTAATTGGTCTTTCCTTACAGTACG
CACAGTTGAACCCCGTTCCCGTCGAGAGCACTCCCGAAGCCGACCGTGTA
TACGAAGCCAAGGCCACCCCCATCATCCAAAAAGTCAAGAAGGACGTAAC
CCGTCACCGGTACGGAGACGACGCCCACCTTGACACGACTGTTCAAGCCC
TCGGGCTGGTGATGCCTAACAAGGAATTTCCCCAATTGCAATACTTGAAG
CAGGGAGTGGAGAATGGCGAGCTGACTTTCTCGATGGTGTTTAAGAGTGA
TGATACTCCCTACCGGTTGTGGGTGGAGCCTGAACGGATTGCTCGGTACG
ACAAATTTTTTGGCCCTGGCGTGTGGTCGACTGTGGAAAAAGTTGATGCG
GAAAGGCGTCTCGTGGCTATCAAACTCATTACAGGCGAGAGACCAGAGTC
AGCAGCGGAGCCCAAGCAAGAGGAGGCTGAGACGGAGGCGGCTTCTACGC
CTGCGTCTGCATAGATGAGGTCAACAACACTCGGCGGGCTTCTTCTTTGC
TGCATCAGTTCGACCACCACTGCCTTTGTCCTCCCCAAACCCCTCAGCCT
TGCCACCACCGCTACCCGACAACAAGCTCAATTACAGCAAGGATGCAAGA
CTGCCAGCGTGCAGGGGATGGGCTTGGCAAGGGCCTTGACAGTGCTGCGG
GATGCGGAGCAAAGCGGCGAGAAGGCGGTGGGCACCGACGTGCCCTTTGA
GCTTCGCGGGTTCTCCCTCGCCACCGTGGGCCTGGCCCTGGGTGGCCTCA
TCACAATTGGCAGTCTCGCTGAGTACCTGATCAGTTCTGGCTCGGAGGGT
CTGTCAGGCGTCGGCTTTGTGTACGGCATCCCCATTCTCCTAATTGGTCT
TTCCTTACAGTACGCACAGTTGAACCCCGTTCCCGTCGAGAGCACTCCCG
AAGCCGACCGTGTATACGAAGCCAAGGCCACCCCCATCATCCAAAAAGTC
AAGAAGGACGTAACCCGTCACCGGTACGGAGACGACGCCCACCTTGACAC
GACTGTTCAAGCCCTCGGGCTGGTGATGCCTAACAAGGAATTTCCCCAAT
TGCAATACTTGAAGCAGGGAGTGGAGAATGGCGAGCTGACTTTCTCGATG
GTGTTTAAGAGTGATGATACTCCCTACCGGTTGTGGGTGGAGCCTGAACG
GATTGCTCGGTACGACAAATTTTTTGGCCCTGGCGTGTGGTCGACTGTGG
AAAAAGTTGATGCGGAAAGGCGTCTCGTGGCTATCAAACTCATTACAGGC
GAGAGACCAGAGTCAGCAGCGGAGCCCAAGCAAGAGGAGGCTGAGACGGA
GGCGGCTTCTACGCCTGCGTCTGCATAGATGAGGTCAACAACACTCGGCG
GGCTTCTTCTTTGCTGCATCAGTTCGACCACCACTGCCTTTGTCCTCCCC
AAACCCCTCAGCCTTGCCACCACCGCTACCCGACAACAAGCTCAATTACA
GCAAGGATGCAAGACTGCCAGCGTGCAGGGGATGGGCTTGGCAAGGGCCT
TGACAGTGCTGCGGGATGCGGAGCAAAGCGGCGAGAAGGCGGTGGGCACC
GACGTGCCCTTTGAGCTTCGCGGGTTCTCCCTCGCCACCGTGGGCCTGGC
CCTGGGTGGCCTCATCACAATTGGCAGTCTCGCTGAGTACCTGATCAGTT
CTGGCTCGGAGGGTCTGTCAGGCGTCGGCTTTGTGTACGGCATCCCCATT
CTCCTAATTGGTCTTTCCTTACAGTACGCACAGTTGAACCCCGTTCCCGT
CGAGAGCACTCCCGAAGCCGACCGTGTATACGAAGCCAAGGCCACCCCCA
TCATCCAAAAAGTCAAGAAGGACGTAACCCGTCACCGGTACGGAGACGAC
GCCCACCTTGACACGACTGTTCAAGCCCTCGGGCTGGTGATGCCTAACAA
GGAATTTCCCCAATTGCAATACTTGAAGCAGGGAGTGGAGAATGGCGAGC
TGACTTTCTCGATGGTGTTTAAGAGTGATGATACTCCCTACCGGTTGTGG
GTGGAGCCTGAACGGATTGCTCGGTACGACAAATTTTTTGGCCCTGGCGT
GTGGTCGACTGTGGAAAAAGTTGATGCGGAAAGGCGTCTCGTGGCTATCA
AACTCATTACAGGCGAGAGACCAGAGTCAGCAGCGGAGCCCAAGCAAGAG
GAGGCTGAGACGGAGGCGGCTTCTACGCCTGCGTCTGCATAGATGAGGTC
AACAACACTCGGCGGGCTTCTTCTTTGCTGCATCAGTTCGACCACCACTG
CCTTTGTCCTCCCCAAACCCCTCAGCCTTGCCACCACCGCTACCCGACAA
CAAGCTCAATTACAGCAAGGATGCAAGACTGCCAGCGTGCAGGGGATGGG
CTTGGCAAGGGCCTTGACAGTGCTGCGGGATGCGGAGCAAAGCGGCGAGA
AGGCGGTGGGCACCGACGTGCCCTTTGAGCTTCGCGGGTTCTCCCTCGCC
ACCGTGGGCCTGGCCCTGGGTGGCCTCATCACAATTGGCAGTCTCGCTGA
GTACCTGATCAGTTCTGGCTCGGAGGGTCTGTCAGGCGTCGGCTTTGTGT
ACGGCATCCCCATTCTCCTAATTGGTCTTTCCTTACAGTACGCACAGTTG
AACCCCGTTCCCGTCGAGAGCACTCCCGAAGCCGACCGTGTATACGAAGC
CAAGGCCACCCCCATCATCCAAAAAGTCAAGAAGGACGTAACCCGTCACC
GGTACGGAGACGACGCCCACCTTGACACGACTGTTCAAGCCCTCGGGCTG
GTGATGCCTAACAAGGAATTTCCCCAATTGCAATACTTGAAGCAGGGAGT
GGAGAATGGCGAGCTGACTTTCTCGATGGTGTTTAAGAGTGATGATACTC
CCTACCGGTTGTGGGTGGAGCCTGAACGGATTGCTCGGTACGACAAATTT
TTTGGCCCTGGCGTGTGGTCGACTGTGGAAAAAGTTGATGCGGAAAGGCG
TCTCGTGGCTATCAAACTCATTACAGGCGAGAGACCAGAGTCAGCAGCGG
AGCCCAAGCAAGAGGAGGCTGAGACGGAGGCGGCTTCTACGCCTGCGTCT
GCATAG

Synonyms

Publications