Properties
| Property Name | Value |
|---|
| TranscriptId | 582271 |
| Track | FilteredModels2 |
| ProteinId | 582185 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:379147..380233 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3459 ID=mRNA_3459|Name=jgi.p|Nanoce1779_2|582185|organism=Nannochloropsis oceanica|type=mRNA|length=638bp
ACAGGAAGCCCCTTTACTTCTCCGTTTTCAATCATGGCCACCAGCCGCGC
GACCCGTCTCCGCTCCGAGAAATTTGACAAAAACGTGACCAAGAGAGGGA
ATGTACCCGTGGGAAAGGCCGCGAAACGCGAGGAGGCCGCCCCCGTGAGT
CCATTGCTCCTTGGCTTCTTTATCTTTGTGGTGGTGGGTTCAGCTATCTT
TTCTATCATCCAGACAGCTTCGAGGCCTCTTTAAAAGGACAAAGCGAGGG
AGAAGAGGAAGTGAAAGAGGACGAAAGGGGAATGAGGAGAAAAAAACTTT
CGAAACGTTTTGAATAACGCTTTTTGGGGGGGGGTGGCATCAGCTGCAGG
CGAGGAGGTGAATAAAGATTGAAAGCAGGATGGTAAGGGAAGGGTGGACG
GAGGGCGAGCGGAGGAAAGGCAGAGTGGGAGTTTTCGTCGTCGCTGAAAG
ATAGTGACTCGTTGTGTTGACATCTCCACCATATATATATCAACACCAGA
AACAACAATAAAACAACAACACTACTACTGAAAAAAAGCCAGGTGGTCTG
ATGACACTCGTATCCTCGCGGTACAGGAAAAAGCGCAACCAAAATAAGAG
ATGAAGGGGGGGAAGATATGGAGGATGAGACCTAGAGA back to topprotein sequence of jgi.p|Nanoce1779_2|582185 >mRNA_3459-protein ID=mRNA_3459-protein|Name=jgi.p|Nanoce1779_2|582185|organism=Nannochloropsis oceanica|type=polypeptide|length=67bp
MATSRATRLRSEKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVV
VGSAIFSIIQTASRPL* back to topmRNA from alignment at scaffold_6:379147..380233+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3459 ID=mRNA_3459|Name=jgi.p|Nanoce1779_2|582185|organism=Nannochloropsis oceanica|type=mRNA|length=1087bp|location=Sequence derived from alignment at scaffold_6:379147..380233+ (Nannochloropsis oceanica)
ACAGGAAGCCCCTTTACTTCTCCGTTTTCAATCATGGTATGTGCCTTGTG
TTTACTTGTGTGTCTTTGGCATTCGCTAGGCTTTCCCTTTCAAAGTCCTG
CGCTCTTGCCTACTCGATCTGCCTGCCACACGACGCAAAACGATGCTCAT
CACTCTGCCACCATACTCTTCCTACCGACAACAACAGGCCACCAGCCGCG
CGACCCGTCTCCGCTCCGAGAAATTTGACAAAAACGTGACCAAGAGAGGG
AATGTACCCGTGGGAAAGGCCGCGGTACGTCTTGTCGAGTGTTGAATATA
GTGGACGGGTCAGGTAGACGTGGAGTATGGTGCTGACATAACTTGCCCGT
TCACGCATCACCAGTTATTCATCATGTTTGTTGTCATCGTCTGATACCCT
CCGCGTCTACGGACTGGCTCATTGAACTTCTATCAAATGTTCATGTCCTA
CACCTCGCCATACCTTGAATGTCCTCTGGTTCTGGATCATATTTATTTTC
TTGTATTCTGGCTCTATTCATTCGCTTCACAACTACCCCTCATTTATCGC
TTTTATTTCACAAACAACATAGAAACGCGAGGAGGCCGCCCCCGTGAGTC
CATTGCTCCTTGGCTTCTTTATCTTTGTGGTGGTGGGTTCAGCTATCTTT
TCTATCATCCAGACAGCTTCGAGGCCTCTTTAAAAGGACAAAGCGAGGGA
GAAGAGGAAGTGAAAGAGGACGAAAGGGGAATGAGGAGAAAAAAACTTTC
GAAACGTTTTGAATAACGCTTTTTGGGGGGGGGTGGCATCAGCTGCAGGC
GAGGAGGTGAATAAAGATTGAAAGCAGGATGGTAAGGGAAGGGTGGACGG
AGGGCGAGCGGAGGAAAGGCAGAGTGGGAGTTTTCGTCGTCGCTGAAAGA
TAGTGACTCGTTGTGTTGACATCTCCACCATATATATATCAACACCAGAA
ACAACAATAAAACAACAACACTACTACTGAAAAAAAGCCAGGTGGTCTGA
TGACACTCGTATCCTCGCGGTACAGGAAAAAGCGCAACCAAAATAAGAGA
TGAAGGGGGGGAAGATATGGAGGATGAGACCTAGAGA back to topCoding sequence (CDS) from alignment at scaffold_6:379147..380233+ >mRNA_3459 ID=mRNA_3459|Name=jgi.p|Nanoce1779_2|582185|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_6:379147..380233+ (Nannochloropsis oceanica)
ATGGCCACCAGCCGCGCGACCCGTCTCCGCTCCGAGAAATTTGACAAAAA
CGTGACCAAGAGAGGGAATGTACCCGTGGGAAAGGCCGCGAAACGCGAGG
AGGCCGCCCCCGTGAGTCCATTGCTCCTTGGCTTCTTTATCTTTGTGGTG
GTGGGTTCAGCTATCTTTTCTATCATCCAGACAGCTTCGAGGCCTCTTTA
AATGGCCACCAGCCGCGCGACCCGTCTCCGCTCCGAGAAATTTGACAAAA
ACGTGACCAAGAGAGGGAATGTACCCGTGGGAAAGGCCGCGAAACGCGAG
GAGGCCGCCCCCGTGAGTCCATTGCTCCTTGGCTTCTTTATCTTTGTGGT
GGTGGGTTCAGCTATCTTTTCTATCATCCAGACAGCTTCGAGGCCTCTTT
AAATGGCCACCAGCCGCGCGACCCGTCTCCGCTCCGAGAAATTTGACAAA
AACGTGACCAAGAGAGGGAATGTACCCGTGGGAAAGGCCGCGAAACGCGA
GGAGGCCGCCCCCGTGAGTCCATTGCTCCTTGGCTTCTTTATCTTTGTGG
TGGTGGGTTCAGCTATCTTTTCTATCATCCAGACAGCTTCGAGGCCTCTT
TAA back to top
|