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Properties
| Property Name | Value |
|---|
| TranscriptId | 582268 |
| Track | FilteredModels2 |
| ProteinId | 582182 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:376769..378689 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3458 ID=mRNA_3458|Name=jgi.p|Nanoce1779_2|582182|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
AGGGGTTACCCTGCCTTGCTGCTTCTCTTTGACCCCGTCGTTCCCCCCAG
GTCGAAACCCGCTGTCCTCTTCCTCTACATATTTTGCCTCGTCATCACTT
AGGAATGGCACCTCAGCTCCTCAAATTCCCATCTTTGACGGGTGGCACCA
CCACGACCACCGTGATTATCAGCGGCAAGCACACGGAGAAAGAAGTCACG
ATAACCAAGGCCTCCCCGGCCATAAAAGCCATGGCCGGGTCCCTTGGCGG
CCTCATGGAAGCCTGTTTATTGCAACCCGTAGATACAATCAAGACGCGCA
TGCAACTCAACCCTGTTCTATTTCCCGGGATCGTCTCTACGGGCTCCTCC
ATTGTCAAGACAGAGGGAACCAAGTCGCTCTGGAAGGGCTTGACGCCGTT
TGCCACGCATTTGTACTTGAAATACGCATTACGTTTCGGGACGAATGCTG
GGTTTCAATCATTGTTAATGGACAAGGAGACAGGTAAACTGGATGCACCG
CGACGAGTGTTGGCGGGACTGGGCGCGGGCGTCACAGAGGCTTTGGTGAT
TGTAACCCCTTTTGAAGTCATCAAGATCCGGCTGCAGAATCAGATGGGGA
CGGACAAGGCCATGCTCAAGTACCACGGGCCCATCGATGCCGTGATTAAG
ACCGTGAAAAATGAGGGTCTACTTGCCCTTTGGAGCGGCGCAACCCCCAC
CGTCTTTCGGAACGGGCTTAACCAAGCCAGCATGTTCTGGTTCAAAAACG
TCGTGGATGAAGTGCTGTGGCACAAGCGAGAAGGCGATGAGAAGCAGCTG
CAGATTTGGCAGTCTATGGCGTCTGGTTTTTTGGCGACGTGTCCAGGAAT
GGTTTTGACAAACCCCTTTGATATAGCTAAGACCCGCCTTCAAGTCCAAG
AGAAAAATGCCACTGGTGCCGCTCCCAAATACCGTGGGCTTTTCCAAACC
ATGGCGGTCATCGCAAAGGAAGAGGGGTTTAAGCAATTGTACCGAGGGTT
GTTGCCTCGTATATTGAGAGTGCCACCGGGGATGGCGATTACCTGGGGGA
TGACCGATCAGATAGTGCAGATGTATGAGAAGAGGTAGATGAAAAGAACA
AATGTAAGGAGGGAGGCAAGGAGAAGAGGGGAGGGGGTTCTGGTTTAATG
GCTTGTGGGATGAAGGAAACTTTGGCCAGAATATGTATAAATTAGAGGGG
AGAATTCATTTTTTTTGCAGTGTGACATGGACATGAGAAAGATATGGCTG
GTATCCCATAGACTATAGAACCATACCGAATGTAAACTTGTAAAGCACTA
TTAATGCGGAAGACGAGGAACGAGTCTGGGAACACTTCCTTTCACCGTCT
GCGCGGCAGGCATTATAATAAGCAAGACTATTTTGATACCATACATCACT
TTTCTATTTCTAGATGTGCGCAATAACAATATAGTAAAATAATAATCACA
GAAGTGTA back to topprotein sequence of jgi.p|Nanoce1779_2|582182 >mRNA_3458-protein ID=mRNA_3458-protein|Name=jgi.p|Nanoce1779_2|582182|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MAPQLLKFPSLTGGTTTTTVIISGKHTEKEVTITKASPAIKAMAGSLGGL
MEACLLQPVDTIKTRMQLNPVLFPGIVSTGSSIVKTEGTKSLWKGLTPFA
THLYLKYALRFGTNAGFQSLLMDKETGKLDAPRRVLAGLGAGVTEALVIV
TPFEVIKIRLQNQMGTDKAMLKYHGPIDAVIKTVKNEGLLALWSGATPTV
FRNGLNQASMFWFKNVVDEVLWHKREGDEKQLQIWQSMASGFLATCPGMV
LTNPFDIAKTRLQVQEKNATGAAPKYRGLFQTMAVIAKEEGFKQLYRGLL
PRILRVPPGMAITWGMTDQIVQMYEKR* back to topmRNA from alignment at scaffold_6:376769..378689- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3458 ID=mRNA_3458|Name=jgi.p|Nanoce1779_2|582182|organism=Nannochloropsis oceanica|type=mRNA|length=1921bp|location=Sequence derived from alignment at scaffold_6:376769..378689- (Nannochloropsis oceanica)
AGGGGTTACCCTGCCTTGCTGCTTCTCTTTGACCCCGTCGTTCCCCCCAG
GTCGAAACCCGCTGTCCTCTTCCTCTACATATTTTGCCTCGTCATCACTT
AGGAATGGCACCTCAGCTCCTCAAATTCCCATCTTTGACGGGTGGCACCA
CCACGACCACCGTGATTATCAGCGGCAAGCACACGGAGAAAGAAGTCACG
ATAACCAAGGCCTCCCCGGCCATAAAAGCCATGGCCGGGTCCCTTGGCGG
CCTCATGGAAGCCTGTTTATTGCAACCCGTAGATACAATCAAGACGCGCA
TGCAACTCAACCCTGTTCTATTTCCCGGGATCGTCTCTACGGGCTCCTCC
ATTGTCAAGACAGAGGGAACCAAGTCGCTCTGGAAGGGCTTGACGCCGTT
TGCCACGCATTTGTACTTGAAATACGCATTACGTTTCGGGACGAATGCTG
GGTTTCAATCATTGTTAATGGACAAGGAGACAGGTAAACTGGATGCACCG
CGACGAGTGTTGGCGGGACTGGGCGCGGGCGTCACAGAGGTAGGTAAAGA
GGGAGGAAGGAAGGGGTTTAGGAGTGCCCCTTGCCACAATCTCCGACAGA
ATTTATCATGCCGCATTAAAATACGCTTTCACGATTCCCTTCAATATTCC
TCTTTCTATTCCCGTCTTCCTCCCTTTCCTTCTCAACTTGGAAGGCTTTG
GTGATTGTAACCCCTTTTGAAGTCATCAAGATCCGGCTGCAGAATCAGAT
GGGGACGGACAAGGCCATGCTCAAGTACCACGGGCCCATCGATGCCGTGA
TTAAGACCGTGAAAAATGAGGTAGGCAGATAATGAGAAGGAGGAGGGGTA
TGTGGGTAGGGACTACGCCTCCGTCAAGTCTCAGCCTCTGTGTAAAGAGA
AGCGAATGAGAGTCTGCAAAATCGAAACACATCCTGCTCACCTTTCCTCC
CCCATCCTCTTCCCACCCATTAGGGTCTACTTGCCCTTTGGAGCGGCGCA
ACCCCCACCGTCTTTCGGAACGGGCTTAACCAAGCCAGCATGTTCTGGTT
CAAAAACGTCGTGGATGAAGTGCTGTGGCACAAGCGAGAAGGCGATGAGA
AGCAGCTGCAGATTTGGCAGTCTATGGCGTCTGGTTTTTTGGCGACGTGT
CCAGGAATGGTTTTGACAAACCCCTTTGATATAGCTAAGGTGAACGAAAA
ACGTCTTGTTCACTTACCTACAGCATTTTTTCGTCCAGCATTCCTCTTTT
CGACGTGGTTGAACTGCTCTCCTTTAAATTCCCTCCTCCCACATTTCTCC
CCTCACCTTCCCTCCCTTCATCCTTCCCTCGCTTCCCCCCATAGACCCGC
CTTCAAGTCCAAGAGAAAAATGCCACTGGTGCCGCTCCCAAATACCGTGG
GCTTTTCCAAACCATGGCGGTCATCGCAAAGGAAGAGGGGTTTAAGCAAT
TGTACCGAGGGTTGTTGCCTCGTATATTGAGAGTGCCACCGGGGATGGCG
ATTACCTGGGGGATGACCGATCAGATAGTGCAGATGTATGAGAAGAGGTA
GATGAAAAGAACAAATGTAAGGAGGGAGGCAAGGAGAAGAGGGGAGGGGG
TTCTGGTTTAATGGCTTGTGGGATGAAGGAAACTTTGGCCAGAATATGTA
TAAATTAGAGGGGAGAATTCATTTTTTTTGCAGTGTGACATGGACATGAG
AAAGATATGGCTGGTATCCCATAGACTATAGAACCATACCGAATGTAAAC
TTGTAAAGCACTATTAATGCGGAAGACGAGGAACGAGTCTGGGAACACTT
CCTTTCACCGTCTGCGCGGCAGGCATTATAATAAGCAAGACTATTTTGAT
ACCATACATCACTTTTCTATTTCTAGATGTGCGCAATAACAATATAGTAA
AATAATAATCACAGAAGTGTA back to topCoding sequence (CDS) from alignment at scaffold_6:376769..378689- >mRNA_3458 ID=mRNA_3458|Name=jgi.p|Nanoce1779_2|582182|organism=Nannochloropsis oceanica|type=CDS|length=3936bp|location=Sequence derived from alignment at scaffold_6:376769..378689- (Nannochloropsis oceanica)
ACCCGCCTTCAAGTCCAAGAGAAAAATGCCACTGGTGCCGCTCCCAAATA
CCGTGGGCTTTTCCAAACCATGGCGGTCATCGCAAAGGAAGAGGGGTTTA
AGCAATTGTACCGAGGGTTGTTGCCTCGTATATTGAGAGTGCCACCGGGG
ATGGCGATTACCTGGGGGATGACCGATCAGATAGTGCAGATGTATGAGAA
GAGGTAGGGTCTACTTGCCCTTTGGAGCGGCGCAACCCCCACCGTCTTTC
GGAACGGGCTTAACCAAGCCAGCATGTTCTGGTTCAAAAACGTCGTGGAT
GAAGTGCTGTGGCACAAGCGAGAAGGCGATGAGAAGCAGCTGCAGATTTG
GCAGTCTATGGCGTCTGGTTTTTTGGCGACGTGTCCAGGAATGGTTTTGA
CAAACCCCTTTGATATAGCTAAGGCTTTGGTGATTGTAACCCCTTTTGAA
GTCATCAAGATCCGGCTGCAGAATCAGATGGGGACGGACAAGGCCATGCT
CAAGTACCACGGGCCCATCGATGCCGTGATTAAGACCGTGAAAAATGAGA
TGGCACCTCAGCTCCTCAAATTCCCATCTTTGACGGGTGGCACCACCACG
ACCACCGTGATTATCAGCGGCAAGCACACGGAGAAAGAAGTCACGATAAC
CAAGGCCTCCCCGGCCATAAAAGCCATGGCCGGGTCCCTTGGCGGCCTCA
TGGAAGCCTGTTTATTGCAACCCGTAGATACAATCAAGACGCGCATGCAA
CTCAACCCTGTTCTATTTCCCGGGATCGTCTCTACGGGCTCCTCCATTGT
CAAGACAGAGGGAACCAAGTCGCTCTGGAAGGGCTTGACGCCGTTTGCCA
CGCATTTGTACTTGAAATACGCATTACGTTTCGGGACGAATGCTGGGTTT
CAATCATTGTTAATGGACAAGGAGACAGGTAAACTGGATGCACCGCGACG
AGTGTTGGCGGGACTGGGCGCGGGCGTCACAGAGACCCGCCTTCAAGTCC
AAGAGAAAAATGCCACTGGTGCCGCTCCCAAATACCGTGGGCTTTTCCAA
ACCATGGCGGTCATCGCAAAGGAAGAGGGGTTTAAGCAATTGTACCGAGG
GTTGTTGCCTCGTATATTGAGAGTGCCACCGGGGATGGCGATTACCTGGG
GGATGACCGATCAGATAGTGCAGATGTATGAGAAGAGGTAGGGTCTACTT
GCCCTTTGGAGCGGCGCAACCCCCACCGTCTTTCGGAACGGGCTTAACCA
AGCCAGCATGTTCTGGTTCAAAAACGTCGTGGATGAAGTGCTGTGGCACA
AGCGAGAAGGCGATGAGAAGCAGCTGCAGATTTGGCAGTCTATGGCGTCT
GGTTTTTTGGCGACGTGTCCAGGAATGGTTTTGACAAACCCCTTTGATAT
AGCTAAGGCTTTGGTGATTGTAACCCCTTTTGAAGTCATCAAGATCCGGC
TGCAGAATCAGATGGGGACGGACAAGGCCATGCTCAAGTACCACGGGCCC
ATCGATGCCGTGATTAAGACCGTGAAAAATGAGATGGCACCTCAGCTCCT
CAAATTCCCATCTTTGACGGGTGGCACCACCACGACCACCGTGATTATCA
GCGGCAAGCACACGGAGAAAGAAGTCACGATAACCAAGGCCTCCCCGGCC
ATAAAAGCCATGGCCGGGTCCCTTGGCGGCCTCATGGAAGCCTGTTTATT
GCAACCCGTAGATACAATCAAGACGCGCATGCAACTCAACCCTGTTCTAT
TTCCCGGGATCGTCTCTACGGGCTCCTCCATTGTCAAGACAGAGGGAACC
AAGTCGCTCTGGAAGGGCTTGACGCCGTTTGCCACGCATTTGTACTTGAA
ATACGCATTACGTTTCGGGACGAATGCTGGGTTTCAATCATTGTTAATGG
ACAAGGAGACAGGTAAACTGGATGCACCGCGACGAGTGTTGGCGGGACTG
GGCGCGGGCGTCACAGAGACCCGCCTTCAAGTCCAAGAGAAAAATGCCAC
TGGTGCCGCTCCCAAATACCGTGGGCTTTTCCAAACCATGGCGGTCATCG
CAAAGGAAGAGGGGTTTAAGCAATTGTACCGAGGGTTGTTGCCTCGTATA
TTGAGAGTGCCACCGGGGATGGCGATTACCTGGGGGATGACCGATCAGAT
AGTGCAGATGTATGAGAAGAGGTAGGGTCTACTTGCCCTTTGGAGCGGCG
CAACCCCCACCGTCTTTCGGAACGGGCTTAACCAAGCCAGCATGTTCTGG
TTCAAAAACGTCGTGGATGAAGTGCTGTGGCACAAGCGAGAAGGCGATGA
GAAGCAGCTGCAGATTTGGCAGTCTATGGCGTCTGGTTTTTTGGCGACGT
GTCCAGGAATGGTTTTGACAAACCCCTTTGATATAGCTAAGGCTTTGGTG
ATTGTAACCCCTTTTGAAGTCATCAAGATCCGGCTGCAGAATCAGATGGG
GACGGACAAGGCCATGCTCAAGTACCACGGGCCCATCGATGCCGTGATTA
AGACCGTGAAAAATGAGATGGCACCTCAGCTCCTCAAATTCCCATCTTTG
ACGGGTGGCACCACCACGACCACCGTGATTATCAGCGGCAAGCACACGGA
GAAAGAAGTCACGATAACCAAGGCCTCCCCGGCCATAAAAGCCATGGCCG
GGTCCCTTGGCGGCCTCATGGAAGCCTGTTTATTGCAACCCGTAGATACA
ATCAAGACGCGCATGCAACTCAACCCTGTTCTATTTCCCGGGATCGTCTC
TACGGGCTCCTCCATTGTCAAGACAGAGGGAACCAAGTCGCTCTGGAAGG
GCTTGACGCCGTTTGCCACGCATTTGTACTTGAAATACGCATTACGTTTC
GGGACGAATGCTGGGTTTCAATCATTGTTAATGGACAAGGAGACAGGTAA
ACTGGATGCACCGCGACGAGTGTTGGCGGGACTGGGCGCGGGCGTCACAG
AGACCCGCCTTCAAGTCCAAGAGAAAAATGCCACTGGTGCCGCTCCCAAA
TACCGTGGGCTTTTCCAAACCATGGCGGTCATCGCAAAGGAAGAGGGGTT
TAAGCAATTGTACCGAGGGTTGTTGCCTCGTATATTGAGAGTGCCACCGG
GGATGGCGATTACCTGGGGGATGACCGATCAGATAGTGCAGATGTATGAG
AAGAGGTAGGGTCTACTTGCCCTTTGGAGCGGCGCAACCCCCACCGTCTT
TCGGAACGGGCTTAACCAAGCCAGCATGTTCTGGTTCAAAAACGTCGTGG
ATGAAGTGCTGTGGCACAAGCGAGAAGGCGATGAGAAGCAGCTGCAGATT
TGGCAGTCTATGGCGTCTGGTTTTTTGGCGACGTGTCCAGGAATGGTTTT
GACAAACCCCTTTGATATAGCTAAGGCTTTGGTGATTGTAACCCCTTTTG
AAGTCATCAAGATCCGGCTGCAGAATCAGATGGGGACGGACAAGGCCATG
CTCAAGTACCACGGGCCCATCGATGCCGTGATTAAGACCGTGAAAAATGA
GATGGCACCTCAGCTCCTCAAATTCCCATCTTTGACGGGTGGCACCACCA
CGACCACCGTGATTATCAGCGGCAAGCACACGGAGAAAGAAGTCACGATA
ACCAAGGCCTCCCCGGCCATAAAAGCCATGGCCGGGTCCCTTGGCGGCCT
CATGGAAGCCTGTTTATTGCAACCCGTAGATACAATCAAGACGCGCATGC
AACTCAACCCTGTTCTATTTCCCGGGATCGTCTCTACGGGCTCCTCCATT
GTCAAGACAGAGGGAACCAAGTCGCTCTGGAAGGGCTTGACGCCGTTTGC
CACGCATTTGTACTTGAAATACGCATTACGTTTCGGGACGAATGCTGGGT
TTCAATCATTGTTAATGGACAAGGAGACAGGTAAACTGGATGCACCGCGA
CGAGTGTTGGCGGGACTGGGCGCGGGCGTCACAGAG back to top
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