jgi.p|Nanoce1779_2|582179, mRNA_3457 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582179
Unique NamemRNA_3457
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length839
Alignment locationscaffold_6:375241..376079 +

Link to JBrowse

Properties
Property NameValue
TranscriptId582265
TrackFilteredModels2
ProteinId582179
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:375241..376079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582179gene_3457Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582179mRNA_3457-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3457CDS_3457Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3457 ID=mRNA_3457|Name=jgi.p|Nanoce1779_2|582179|organism=Nannochloropsis oceanica|type=mRNA|length=839bp
CGCCTCCGCCACTTTCGCCCGCTTATTCCCCATCATGCCGCCGACTTTCC
TCCTACTAGTGCTCCTCGATCCTACGCGCCGTCGCTGCTGCGTGTTGGTA
AGATCTTGCAAGCCTCCCTTCCCGTCCTGCCCCTCATACTCCTCGGGCAT
CATCTCTATGTTCACAATTCGTAGTCGTGGCGCCCCCGGAACCATGGGTA
ATTCTGCCCCTGACTTGATCAAAGACAATAGAGTAGGCCGTTTCGGCCTT
TTTTGCCCCACCACCGTGCGAGGTGGACGACCACGCGGTATGCCCAGCGC
CGCCACATCCACCCCGGCGTCTCGCAAAGCCCGATACAACGATCCCCCGA
TTCGGCCGTGCTTCGTTTTCTTGGGCAATAGCGAGTTGAGATTCAGCGTA
ACGACATTCTCATCGTGTTCTCGAAAATAGAATTGCTTGACATCGCCTTG
CTGCGAAACAGCGGTGGTGACCGCGGCGGTGGCGTTGGCGGCGGCGGGAG
CAGTGATTGTCGTGTTGGTAGTTGTCGCGTCGGTGCTGGCGGCCGAAATG
GCTGCTTCGTCATCGTGGGTGCTTGTTTCCGCATCTATGTACCTGGCACT
GGCTGTTACATTAGCTGGTAGTGCAGGGTTGGGCGTGGTCTGCGAGTCCA
TCGCCGTGGCGGAAGGCGTGGTCAGGATGGGTGCATTGTCGTCCCGTTTA
GGGTTTGAATTCGTGTTTTCACAAGTGGAGGCGTCGCCTGAGAATTGCGA
CGGATTTACGGGGCTGTAGGGCATTTCTTGTGCCTGGATGGTCATGTTTT
GACGGACTACGTCGTTGTGAGCTTGCTGAGTGTGTGCTG
back to top

protein sequence of jgi.p|Nanoce1779_2|582179

>mRNA_3457-protein ID=mRNA_3457-protein|Name=jgi.p|Nanoce1779_2|582179|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MPPTFLLLVLLDPTRRRCCVLVRSCKPPFPSCPSYSSGIISMFTIRSRGA
PGTMGNSAPDLIKDNRVGRFGLFCPTTVRGGRPRGMPSAATSTPASRKAR
YNDPPIRPCFVFLGNSELRFSVTTFSSCSRK*
back to top

mRNA from alignment at scaffold_6:375241..376079+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3457 ID=mRNA_3457|Name=jgi.p|Nanoce1779_2|582179|organism=Nannochloropsis oceanica|type=mRNA|length=839bp|location=Sequence derived from alignment at scaffold_6:375241..376079+ (Nannochloropsis oceanica)
CGCCTCCGCCACTTTCGCCCGCTTATTCCCCATCATGCCGCCGACTTTCC
TCCTACTAGTGCTCCTCGATCCTACGCGCCGTCGCTGCTGCGTGTTGGTA
AGATCTTGCAAGCCTCCCTTCCCGTCCTGCCCCTCATACTCCTCGGGCAT
CATCTCTATGTTCACAATTCGTAGTCGTGGCGCCCCCGGAACCATGGGTA
ATTCTGCCCCTGACTTGATCAAAGACAATAGAGTAGGCCGTTTCGGCCTT
TTTTGCCCCACCACCGTGCGAGGTGGACGACCACGCGGTATGCCCAGCGC
CGCCACATCCACCCCGGCGTCTCGCAAAGCCCGATACAACGATCCCCCGA
TTCGGCCGTGCTTCGTTTTCTTGGGCAATAGCGAGTTGAGATTCAGCGTA
ACGACATTCTCATCGTGTTCTCGAAAATAGAATTGCTTGACATCGCCTTG
CTGCGAAACAGCGGTGGTGACCGCGGCGGTGGCGTTGGCGGCGGCGGGAG
CAGTGATTGTCGTGTTGGTAGTTGTCGCGTCGGTGCTGGCGGCCGAAATG
GCTGCTTCGTCATCGTGGGTGCTTGTTTCCGCATCTATGTACCTGGCACT
GGCTGTTACATTAGCTGGTAGTGCAGGGTTGGGCGTGGTCTGCGAGTCCA
TCGCCGTGGCGGAAGGCGTGGTCAGGATGGGTGCATTGTCGTCCCGTTTA
GGGTTTGAATTCGTGTTTTCACAAGTGGAGGCGTCGCCTGAGAATTGCGA
CGGATTTACGGGGCTGTAGGGCATTTCTTGTGCCTGGATGGTCATGTTTT
GACGGACTACGTCGTTGTGAGCTTGCTGAGTGTGTGCTG
back to top

Coding sequence (CDS) from alignment at scaffold_6:375241..376079+

>mRNA_3457 ID=mRNA_3457|Name=jgi.p|Nanoce1779_2|582179|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_6:375241..376079+ (Nannochloropsis oceanica)
ATGCCGCCGACTTTCCTCCTACTAGTGCTCCTCGATCCTACGCGCCGTCG
CTGCTGCGTGTTGGTAAGATCTTGCAAGCCTCCCTTCCCGTCCTGCCCCT
CATACTCCTCGGGCATCATCTCTATGTTCACAATTCGTAGTCGTGGCGCC
CCCGGAACCATGGGTAATTCTGCCCCTGACTTGATCAAAGACAATAGAGT
AGGCCGTTTCGGCCTTTTTTGCCCCACCACCGTGCGAGGTGGACGACCAC
GCGGTATGCCCAGCGCCGCCACATCCACCCCGGCGTCTCGCAAAGCCCGA
TACAACGATCCCCCGATTCGGCCGTGCTTCGTTTTCTTGGGCAATAGCGA
GTTGAGATTCAGCGTAACGACATTCTCATCGTGTTCTCGAAAATAG
back to top
Synonyms
Publications