jgi.p|Nanoce1779_2|582178, mRNA_3456 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582178
Unique Name	mRNA_3456
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2927
Alignment location	scaffold_6:372314..375240 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582264
Track	FilteredModels2
ProteinId	582178

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:372314..375240 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582178	gene_3456	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582178	mRNA_3456-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3456	CDS_3456	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:372314..375240+
coding sequence from alignment at scaffold_6:372314..375240+

mRNA sequence

>mRNA_3456 ID=mRNA_3456|Name=jgi.p|Nanoce1779_2|582178|organism=Nannochloropsis oceanica|type=mRNA|length=2927bp
TCTGCTATCTATAAAGGTGGTCGGGGCTGCGGTGCGGGATGGGACGGGAC
TCGTAGCCGTCATGGCCTTGCAACGCGGGATGAATTTTGTGATGAACCAG
CTTTTGTTGCGGCACGTGAACCCCTCTGTTTTTGGCCTCGCCTCAATCCC
CCTCGACCTGCTTCTCAACACGGCCCTCTTCCTCTCCCGGGAAGGTTTCC
GGCTGGCCTTGGGCCGTCGCACCTTGGTGGCATTATCGTCGGATTCCCTG
GAATTTCGTCAGTTTGTCAATTTGAGTTGGGTGCCCGCAGGGCTAGGACC
ATTAGTGTCTCTCCTTTCTTTGGCCTTGCTGCCTTCCAGCAGTGTTGGGA
AAGGAACAGGAGAAGGGGGAAAAGACATAGAGGCACTGCGACAGACGGGG
CTACTCTTCTGCTTGGCTGCTGCTTTAGAAAGTCTGAGCGAGCCGGCGTA
TTTAATTTGTCAAGGGTGCTTGCTTACGTCCATAAGGGCGGCGTCTGAGG
GCCTTGCGACATTAACACGTACGGCAATTACCTTTGGATTGCTCGCTTGG
GGTTTACCGCAGGACAGAGCGCTGGTAGCCTTTGGTCTGGCCCAAGTGGG
ATATTCATTGGTGCTCTTATCAGTCTATTGGGGATATCTTCTCTACGTAG
GATCTAAGGGAAAAGAAGATGAAGAGGCAAGAAAATGGGGGACGAACGAT
GACGCCCCAGGAGAAACCACCCCTCCCTCCCCACCGATACCACTCCGCCT
CCTCTCCCTCCATCACCTCCTCCCCGGACCCCCTCCCTCTCCATCGACCC
CGTGGATGGAGCCCTCCCACCTCTCCCTCGCTGCCGCGTTGACGGGTCAA
TCGTTTTTTAAGCACCTGCTGACTCAGGGGGATAAAATTGTCCTTTCCAT
CGGAAGCTCGCACTACTCACAGGGGTTGTATGCCCTGGCACAGAATTATG
GTTCCTTGGCGGCACGGTTATTTTTCCAACCGTTGGAAGAGAGTGGTCGG
TTGATGTTCTCGAGACTGGCCGAAGCAGGATATCCTGGTGGTGACGGGGA
AAAAAAAGAGCGAGTGAAGGAGGAACATGAGGCTGAAATGAAGGGTGGCA
GTGGGAGCAGCAGAAGGATAACAAGAGCCTCCACGTCCCAAAACACTCTC
ACGAGCACCAGCTCCTCGCTCCGCTTCTCTTCGACGTCGAATAAAAAAAC
CCTTCGTCTTTTGCTTGGCGCTTTGGTGAAGAGCGTTGTCCTTGTCGGCC
TCCTCTTCGCCTGCTTCGGGTTCAACTACACCCGCGTCCTCCTCCGGTTC
CTACTTCCCGGGCAATCCTGGAAGGAGAAGGAAGCAGGAAAGAATGGCGA
GGGGAGAAGTCAGGTTTTGTCGTGGTATTGCTTGTACGTCTTGTTTTTAG
CCGTAAATGGAATGACGGAGGCATTTGTGTATGCTGTTGCGACGAGGCAC
GAGGTGGGAGGATTGAGCAGGTCGGCTGCGGTCAGCTTTGTGGTGTTTGC
GCTAGGCGCGATCCCATTGATGGCAGGAGGGGGAACGATCGGGCTTATCA
TGGCGAATTGTCTGGGGATGCTGACGAGGATTGGATTTAGCTGGGGGTTT
ATCCGGAAGTATTTTGCCTCGGAGGGGACGGAGGTGAAAGAGAGAGGGAG
GGAGAAGGGCGTAGAGGGTGAGGGGGAGGAGGGGTGGAGGGAGGGAGAGG
AAAAAAGGCAGGGGAGGGAGAGCGGGGAACAAAGGACAATGCCGGATATG
TTTCCGCGCCCTGTGGTGCTTGCGGCGTTTGGGGTTGCCTTCGCAGTGAC
GAGGGCGTCGGACCGAGCGATGGTGTCTGTTGAGGAGTGGAGGGGGATAA
TGAGGCACGTGGGGGTAGGACTGGCGGCTTTAATGTGTGTGCTTGGGATG
GTGTGGTGTGTAGAGAAGGAGTTTGTGACGGATTTGAGCGGCATACGGCG
GTTGGGTTCCGGAAGTGGAAGGAGGGACAAGAAGAAGGCATGACAATAAT
GATAAATGGACGGATTGATGTACGAAATACGAAATATAAAAGTCAAAAAT
TGGAAATCGATATAGGAATGTGGGGTTTTCAAAGAAAATATTCATTGCTC
GACAATCGTTTCTTTTCCAGAGGCCTGGAGGGAGAAAAGAAAGGAGGGAA
GCGAGCATGGCACATTAGAATCCCCTTAACGCCGTGGTGTGAAATGCATC
CTGATTTCCCTTGTTTCCTTTCACTTTTCGCTTTGCCTCTGGTGTTGGAC
TTAGCGTGCGGGGTGGATTGTTCTCTTGTTCTTATGTCTACCTCTCGTCT
TTCGTCTCGCTACTACTCCTACGGGCCCCAAAATTGGCTATTGGGGATCT
GGGTCAGGTTGAGTCTACTTATTGATGTGCGAGCAATTCCGTTTGCACGA
CCATTTCTCTCTGGTTTTTACTCTTCTTTAAATCCTTTGGGCATTCCAGA
GTTTTTCCCATCTGCCACAAAATCCTCTCCATAAGGGTCACCCCCTTCTG
TTCCACCTCTCCGCGCACGCAGGTCTGTGAGAGTGGGTGGCACAGTTCTG
CTCAGTGTGAGGGTGGGATGCTTTCCAGACCAGAACTACGCTGTCACTCA
GGAAGAAATCTCCTCTTCCGCAGGGCACTCTTTACCACCTCTTTCTCCTC
TCGGTTTCCTAAAGTCAGTTTCCTTCAGTTCTCCACGCCACATGAATCTA
TCCCAACGGCGGCCTGTCCACTCTTGCACTACTCTACTCCCAGCACTTAC
AAAAAGACAAATATGACACACCTCTCTCTTCACCGCCATCTCCTTCCACT
ATTTGAATCAGCTCAACGAGCTTGTCTCTCCCAGCAAAAGCAACAACCCC
GTCGCCGCCTCATCATCCGCAACCAAGCCCTCCATCGGTCCCTCCTGCCC
TCCTTCCCCTTCCTGCTTTCCCCCCTC

protein sequence of jgi.p|Nanoce1779_2|582178

>mRNA_3456-protein ID=mRNA_3456-protein|Name=jgi.p|Nanoce1779_2|582178|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MALQRGMNFVMNQLLLRHVNPSVFGLASIPLDLLLNTALFLSREGFRLAL
GRRTLVALSSDSLEFRQFVNLSWVPAGLGPLVSLLSLALLPSSSVGKGTG
EGGKDIEALRQTGLLFCLAAALESLSEPAYLICQGCLLTSIRAASEGLAT
LTRTAITFGLLAWGLPQDRALVAFGLAQVGYSLVLLSVYWGYLLYVGSKG
KEDEEARKWGTNDDAPGETTPPSPPIPLRLLSLHHLLPGPPPSPSTPWME
PSHLSLAAALTGQSFFKHLLTQGDKIVLSIGSSHYSQGLYALAQNYGSLA
ARLFFQPLEESGRLMFSRLAEAGYPGGDGEKKERVKEEHEAEMKGGSGSS
RRITRASTSQNTLTSTSSSLRFSSTSNKKTLRLLLGALVKSVVLVGLLFA
CFGFNYTRVLLRFLLPGQSWKEKEAGKNGEGRSQVLSWYCLYVLFLAVNG
MTEAFVYAVATRHEVGGLSRSAAVSFVVFALGAIPLMAGGGTIGLIMANC
LGMLTRIGFSWGFIRKYFASEGTEVKERGREKGVEGEGEEGWREGEEKRQ
GRESGEQRTMPDMFPRPVVLAAFGVAFAVTRASDRAMVSVEEWRGIMRHV
GVGLAALMCVLGMVWCVEKEFVTDLSGIRRLGSGSGRRDKKKA*

mRNA from alignment at scaffold_6:372314..375240+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3456 ID=mRNA_3456|Name=jgi.p|Nanoce1779_2|582178|organism=Nannochloropsis oceanica|type=mRNA|length=2927bp|location=Sequence derived from alignment at scaffold_6:372314..375240+ (Nannochloropsis oceanica)
TCTGCTATCTATAAAGGTGGTCGGGGCTGCGGTGCGGGATGGGACGGGAC
TCGTAGCCGTCATGGCCTTGCAACGCGGGATGAATTTTGTGATGAACCAG
CTTTTGTTGCGGCACGTGAACCCCTCTGTTTTTGGCCTCGCCTCAATCCC
CCTCGACCTGCTTCTCAACACGGCCCTCTTCCTCTCCCGGGAAGGTTTCC
GGCTGGCCTTGGGCCGTCGCACCTTGGTGGCATTATCGTCGGATTCCCTG
GAATTTCGTCAGTTTGTCAATTTGAGTTGGGTGCCCGCAGGGCTAGGACC
ATTAGTGTCTCTCCTTTCTTTGGCCTTGCTGCCTTCCAGCAGTGTTGGGA
AAGGAACAGGAGAAGGGGGAAAAGACATAGAGGCACTGCGACAGACGGGG
CTACTCTTCTGCTTGGCTGCTGCTTTAGAAAGTCTGAGCGAGCCGGCGTA
TTTAATTTGTCAAGGGTGCTTGCTTACGTCCATAAGGGCGGCGTCTGAGG
GCCTTGCGACATTAACACGTACGGCAATTACCTTTGGATTGCTCGCTTGG
GGTTTACCGCAGGACAGAGCGCTGGTAGCCTTTGGTCTGGCCCAAGTGGG
ATATTCATTGGTGCTCTTATCAGTCTATTGGGGATATCTTCTCTACGTAG
GATCTAAGGGAAAAGAAGATGAAGAGGCAAGAAAATGGGGGACGAACGAT
GACGCCCCAGGAGAAACCACCCCTCCCTCCCCACCGATACCACTCCGCCT
CCTCTCCCTCCATCACCTCCTCCCCGGACCCCCTCCCTCTCCATCGACCC
CGTGGATGGAGCCCTCCCACCTCTCCCTCGCTGCCGCGTTGACGGGTCAA
TCGTTTTTTAAGCACCTGCTGACTCAGGGGGATAAAATTGTCCTTTCCAT
CGGAAGCTCGCACTACTCACAGGGGTTGTATGCCCTGGCACAGAATTATG
GTTCCTTGGCGGCACGGTTATTTTTCCAACCGTTGGAAGAGAGTGGTCGG
TTGATGTTCTCGAGACTGGCCGAAGCAGGATATCCTGGTGGTGACGGGGA
AAAAAAAGAGCGAGTGAAGGAGGAACATGAGGCTGAAATGAAGGGTGGCA
GTGGGAGCAGCAGAAGGATAACAAGAGCCTCCACGTCCCAAAACACTCTC
ACGAGCACCAGCTCCTCGCTCCGCTTCTCTTCGACGTCGAATAAAAAAAC
CCTTCGTCTTTTGCTTGGCGCTTTGGTGAAGAGCGTTGTCCTTGTCGGCC
TCCTCTTCGCCTGCTTCGGGTTCAACTACACCCGCGTCCTCCTCCGGTTC
CTACTTCCCGGGCAATCCTGGAAGGAGAAGGAAGCAGGAAAGAATGGCGA
GGGGAGAAGTCAGGTTTTGTCGTGGTATTGCTTGTACGTCTTGTTTTTAG
CCGTAAATGGAATGACGGAGGCATTTGTGTATGCTGTTGCGACGAGGCAC
GAGGTGGGAGGATTGAGCAGGTCGGCTGCGGTCAGCTTTGTGGTGTTTGC
GCTAGGCGCGATCCCATTGATGGCAGGAGGGGGAACGATCGGGCTTATCA
TGGCGAATTGTCTGGGGATGCTGACGAGGATTGGATTTAGCTGGGGGTTT
ATCCGGAAGTATTTTGCCTCGGAGGGGACGGAGGTGAAAGAGAGAGGGAG
GGAGAAGGGCGTAGAGGGTGAGGGGGAGGAGGGGTGGAGGGAGGGAGAGG
AAAAAAGGCAGGGGAGGGAGAGCGGGGAACAAAGGACAATGCCGGATATG
TTTCCGCGCCCTGTGGTGCTTGCGGCGTTTGGGGTTGCCTTCGCAGTGAC
GAGGGCGTCGGACCGAGCGATGGTGTCTGTTGAGGAGTGGAGGGGGATAA
TGAGGCACGTGGGGGTAGGACTGGCGGCTTTAATGTGTGTGCTTGGGATG
GTGTGGTGTGTAGAGAAGGAGTTTGTGACGGATTTGAGCGGCATACGGCG
GTTGGGTTCCGGAAGTGGAAGGAGGGACAAGAAGAAGGCATGACAATAAT
GATAAATGGACGGATTGATGTACGAAATACGAAATATAAAAGTCAAAAAT
TGGAAATCGATATAGGAATGTGGGGTTTTCAAAGAAAATATTCATTGCTC
GACAATCGTTTCTTTTCCAGAGGCCTGGAGGGAGAAAAGAAAGGAGGGAA
GCGAGCATGGCACATTAGAATCCCCTTAACGCCGTGGTGTGAAATGCATC
CTGATTTCCCTTGTTTCCTTTCACTTTTCGCTTTGCCTCTGGTGTTGGAC
TTAGCGTGCGGGGTGGATTGTTCTCTTGTTCTTATGTCTACCTCTCGTCT
TTCGTCTCGCTACTACTCCTACGGGCCCCAAAATTGGCTATTGGGGATCT
GGGTCAGGTTGAGTCTACTTATTGATGTGCGAGCAATTCCGTTTGCACGA
CCATTTCTCTCTGGTTTTTACTCTTCTTTAAATCCTTTGGGCATTCCAGA
GTTTTTCCCATCTGCCACAAAATCCTCTCCATAAGGGTCACCCCCTTCTG
TTCCACCTCTCCGCGCACGCAGGTCTGTGAGAGTGGGTGGCACAGTTCTG
CTCAGTGTGAGGGTGGGATGCTTTCCAGACCAGAACTACGCTGTCACTCA
GGAAGAAATCTCCTCTTCCGCAGGGCACTCTTTACCACCTCTTTCTCCTC
TCGGTTTCCTAAAGTCAGTTTCCTTCAGTTCTCCACGCCACATGAATCTA
TCCCAACGGCGGCCTGTCCACTCTTGCACTACTCTACTCCCAGCACTTAC
AAAAAGACAAATATGACACACCTCTCTCTTCACCGCCATCTCCTTCCACT
ATTTGAATCAGCTCAACGAGCTTGTCTCTCCCAGCAAAAGCAACAACCCC
GTCGCCGCCTCATCATCCGCAACCAAGCCCTCCATCGGTCCCTCCTGCCC
TCCTTCCCCTTCCTGCTTTCCCCCCTC

Coding sequence (CDS) from alignment at scaffold_6:372314..375240+

>mRNA_3456 ID=mRNA_3456|Name=jgi.p|Nanoce1779_2|582178|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_6:372314..375240+ (Nannochloropsis oceanica)
ATGGCCTTGCAACGCGGGATGAATTTTGTGATGAACCAGCTTTTGTTGCG
GCACGTGAACCCCTCTGTTTTTGGCCTCGCCTCAATCCCCCTCGACCTGC
TTCTCAACACGGCCCTCTTCCTCTCCCGGGAAGGTTTCCGGCTGGCCTTG
GGCCGTCGCACCTTGGTGGCATTATCGTCGGATTCCCTGGAATTTCGTCA
GTTTGTCAATTTGAGTTGGGTGCCCGCAGGGCTAGGACCATTAGTGTCTC
TCCTTTCTTTGGCCTTGCTGCCTTCCAGCAGTGTTGGGAAAGGAACAGGA
GAAGGGGGAAAAGACATAGAGGCACTGCGACAGACGGGGCTACTCTTCTG
CTTGGCTGCTGCTTTAGAAAGTCTGAGCGAGCCGGCGTATTTAATTTGTC
AAGGGTGCTTGCTTACGTCCATAAGGGCGGCGTCTGAGGGCCTTGCGACA
TTAACACGTACGGCAATTACCTTTGGATTGCTCGCTTGGGGTTTACCGCA
GGACAGAGCGCTGGTAGCCTTTGGTCTGGCCCAAGTGGGATATTCATTGG
TGCTCTTATCAGTCTATTGGGGATATCTTCTCTACGTAGGATCTAAGGGA
AAAGAAGATGAAGAGGCAAGAAAATGGGGGACGAACGATGACGCCCCAGG
AGAAACCACCCCTCCCTCCCCACCGATACCACTCCGCCTCCTCTCCCTCC
ATCACCTCCTCCCCGGACCCCCTCCCTCTCCATCGACCCCGTGGATGGAG
CCCTCCCACCTCTCCCTCGCTGCCGCGTTGACGGGTCAATCGTTTTTTAA
GCACCTGCTGACTCAGGGGGATAAAATTGTCCTTTCCATCGGAAGCTCGC
ACTACTCACAGGGGTTGTATGCCCTGGCACAGAATTATGGTTCCTTGGCG
GCACGGTTATTTTTCCAACCGTTGGAAGAGAGTGGTCGGTTGATGTTCTC
GAGACTGGCCGAAGCAGGATATCCTGGTGGTGACGGGGAAAAAAAAGAGC
GAGTGAAGGAGGAACATGAGGCTGAAATGAAGGGTGGCAGTGGGAGCAGC
AGAAGGATAACAAGAGCCTCCACGTCCCAAAACACTCTCACGAGCACCAG
CTCCTCGCTCCGCTTCTCTTCGACGTCGAATAAAAAAACCCTTCGTCTTT
TGCTTGGCGCTTTGGTGAAGAGCGTTGTCCTTGTCGGCCTCCTCTTCGCC
TGCTTCGGGTTCAACTACACCCGCGTCCTCCTCCGGTTCCTACTTCCCGG
GCAATCCTGGAAGGAGAAGGAAGCAGGAAAGAATGGCGAGGGGAGAAGTC
AGGTTTTGTCGTGGTATTGCTTGTACGTCTTGTTTTTAGCCGTAAATGGA
ATGACGGAGGCATTTGTGTATGCTGTTGCGACGAGGCACGAGGTGGGAGG
ATTGAGCAGGTCGGCTGCGGTCAGCTTTGTGGTGTTTGCGCTAGGCGCGA
TCCCATTGATGGCAGGAGGGGGAACGATCGGGCTTATCATGGCGAATTGT
CTGGGGATGCTGACGAGGATTGGATTTAGCTGGGGGTTTATCCGGAAGTA
TTTTGCCTCGGAGGGGACGGAGGTGAAAGAGAGAGGGAGGGAGAAGGGCG
TAGAGGGTGAGGGGGAGGAGGGGTGGAGGGAGGGAGAGGAAAAAAGGCAG
GGGAGGGAGAGCGGGGAACAAAGGACAATGCCGGATATGTTTCCGCGCCC
TGTGGTGCTTGCGGCGTTTGGGGTTGCCTTCGCAGTGACGAGGGCGTCGG
ACCGAGCGATGGTGTCTGTTGAGGAGTGGAGGGGGATAATGAGGCACGTG
GGGGTAGGACTGGCGGCTTTAATGTGTGTGCTTGGGATGGTGTGGTGTGT
AGAGAAGGAGTTTGTGACGGATTTGAGCGGCATACGGCGGTTGGGTTCCG
GAAGTGGAAGGAGGGACAAGAAGAAGGCATGA

Synonyms

Publications