jgi.p|Nanoce1779_2|582172, mRNA_3455 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582172
Unique Name	mRNA_3455
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1778
Alignment location	scaffold_6:368307..370084 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582258
Track	FilteredModels2
ProteinId	582172

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:368307..370084 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582172	gene_3455	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582172	mRNA_3455-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3455	CDS_3455	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:368307..370084+
coding sequence from alignment at scaffold_6:368307..370084+

mRNA sequence

>mRNA_3455 ID=mRNA_3455|Name=jgi.p|Nanoce1779_2|582172|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp
CTCACCCACCCTCCTTCCCAGCCTTTTTGCGGGCATAATTTGAGTACAAA
TGGTGCCACGACACCCTACACGGCAAGCTGAATACCACAATAGGTGGGTA
CCACAATATGTGTCGGTTTTTGCCAACCGTGCTATTTATGGCCAAAATGA
AACGACAAATGTGGCCTCTTTTCGTTCGTTCAACCTTAACCGACTCCCCC
TTCCCCACATTCAGCATGACCTGCCCATACCGACGCGTTCCAAGACCACC
AGCTCTGTTGCTTTTTTGGGTCGCATTGGCGGCCTTCCGGCAAACACTGG
CAGCGATTTGGGGCCATGACAACATTGGTAAGCGCAGGCATGTATATATA
TATGACGTTTCCATGTTCTCCAGACCGGTCCACTTGGTACTAACTTTCCC
AACCCTCTCGTCCCTACTTCTGTTTCCTAGAAGTCATGCCCCATACATCC
TTATTCTCTGCTATGTCACGACGCTCTCTTCCACCCATGCAGCGACCCCG
ACCAGCATTTCATCTCTGGCCCGAACTAAACCCCCATGAGCACGAAGACC
GCAATCTAGGACGTTCCAGAGTATGGCAACGATTTAGCAACGCGACGGGG
CACTCCGACAGGGTGATTGAGGTCGACAGGAAAACGGACTTCCAAGGTTT
CCTAAAGAAAGAGCGGAATGCCTTAGAACTTTTCGAGAGTAATTGGGCAT
TAACCTGGACGCGATGGAAACCCTTTGTTTCTATTGGAGCCAAGGGCATG
GTCGGTGCGACGATGTGCCTTGCAGGGGCCCATTTTGGGAGATGCGTTGT
TTTGTTCCACACGATGCGCGTGACGGGCTGGCCTGCTTTTCAGAATGCGT
TGGTGGAGTTGGGGAAGAGCTACAGTGCCGCACGGGAGGTGGTAAAGGCA
GAGGTGGGTAAAGTGGTAAGGCCTCGGGAATTACTACAGGCCGTTTCATA
TGAACTTAAGGGCGTGCGCTGCCTCATCCAAGAATCGCAAAAGGCGCTGG
AGGACGGGGTGATATCCAAGGCCGAAGCCAAGGAGATACTGAGGCAGGCA
CAGGTGGATAAGAAAAAGCTGGAGTACGAATCATGGTGCCTGAATCAGGC
GTTGGACTCATTTGCGGCTCTGAGCGCGGCTATTGACACAAATCGGCTCA
AGGATGCAGGAAAAGGACTGTATACTGGCATGGTTGCTTGTGTTGCTTCG
GCCCACAGCGTGACTGTGCGTAAATTGTCTTTAGCGTTTGATTTGGGGAG
TATTTTATCAGGGAATATTGCCTGTGTCATGTGTTCCCTGATGGAGCGCA
TACACAGTCAAGAGATGGCTCGTTTTTTACCTCCCGAGACAAGAAAATTT
TTCAAAATGTCCATCCAAATCGCAGGAATGATTCAAGGTCTCTTGATCAT
TAACACCGTCGTACCCAAAATGAGTTTGCGCATCTCCAGTGCTGCCTTGG
GGGCGGCCTGGCTGTCGGATGCCATCGCTGAGACTGTTGATCCATGGTTG
AAGGCACATGAGGGATGGGAACCAATAGCCGGACGCTTGCCTTACGCGGT
TTTGCAAGTGAGCCTGACTGTTGGAGGGTACTATGTGCAAAAGCATGTAT
ACCCAGGCAGGTTTCCCTTATTAGTGGAGCGTTTTTTGGCACCTTTGGGC
TTTGTGGAGAGTCGGCTGAAAGATTTCAATGGGTTGTTTAAAAAGTAGAT
TGGGGATTAGCTTGTAAATAAATTGATGCATGTACATTAAACTTGTTGTG
CTCGTGGGGGGGCATGCGTACGGGCGGG

protein sequence of jgi.p|Nanoce1779_2|582172

>mRNA_3455-protein ID=mRNA_3455-protein|Name=jgi.p|Nanoce1779_2|582172|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MPHTSLFSAMSRRSLPPMQRPRPAFHLWPELNPHEHEDRNLGRSRVWQRF
SNATGHSDRVIEVDRKTDFQGFLKKERNALELFESNWALTWTRWKPFVSI
GAKGMVGATMCLAGAHFGRCVVLFHTMRVTGWPAFQNALVELGKSYSAAR
EVVKAEVGKVVRPRELLQAVSYELKGVRCLIQESQKALEDGVISKAEAKE
ILRQAQVDKKKLEYESWCLNQALDSFAALSAAIDTNRLKDAGKGLYTGMV
ACVASAHSVTVRKLSLAFDLGSILSGNIACVMCSLMERIHSQEMARFLPP
ETRKFFKMSIQIAGMIQGLLIINTVVPKMSLRISSAALGAAWLSDAIAET
VDPWLKAHEGWEPIAGRLPYAVLQVSLTVGGYYVQKHVYPGRFPLLVERF
LAPLGFVESRLKDFNGLFKK*

mRNA from alignment at scaffold_6:368307..370084+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3455 ID=mRNA_3455|Name=jgi.p|Nanoce1779_2|582172|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp|location=Sequence derived from alignment at scaffold_6:368307..370084+ (Nannochloropsis oceanica)
CTCACCCACCCTCCTTCCCAGCCTTTTTGCGGGCATAATTTGAGTACAAA
TGGTGCCACGACACCCTACACGGCAAGCTGAATACCACAATAGGTGGGTA
CCACAATATGTGTCGGTTTTTGCCAACCGTGCTATTTATGGCCAAAATGA
AACGACAAATGTGGCCTCTTTTCGTTCGTTCAACCTTAACCGACTCCCCC
TTCCCCACATTCAGCATGACCTGCCCATACCGACGCGTTCCAAGACCACC
AGCTCTGTTGCTTTTTTGGGTCGCATTGGCGGCCTTCCGGCAAACACTGG
CAGCGATTTGGGGCCATGACAACATTGGTAAGCGCAGGCATGTATATATA
TATGACGTTTCCATGTTCTCCAGACCGGTCCACTTGGTACTAACTTTCCC
AACCCTCTCGTCCCTACTTCTGTTTCCTAGAAGTCATGCCCCATACATCC
TTATTCTCTGCTATGTCACGACGCTCTCTTCCACCCATGCAGCGACCCCG
ACCAGCATTTCATCTCTGGCCCGAACTAAACCCCCATGAGCACGAAGACC
GCAATCTAGGACGTTCCAGAGTATGGCAACGATTTAGCAACGCGACGGGG
CACTCCGACAGGGTGATTGAGGTCGACAGGAAAACGGACTTCCAAGGTTT
CCTAAAGAAAGAGCGGAATGCCTTAGAACTTTTCGAGAGTAATTGGGCAT
TAACCTGGACGCGATGGAAACCCTTTGTTTCTATTGGAGCCAAGGGCATG
GTCGGTGCGACGATGTGCCTTGCAGGGGCCCATTTTGGGAGATGCGTTGT
TTTGTTCCACACGATGCGCGTGACGGGCTGGCCTGCTTTTCAGAATGCGT
TGGTGGAGTTGGGGAAGAGCTACAGTGCCGCACGGGAGGTGGTAAAGGCA
GAGGTGGGTAAAGTGGTAAGGCCTCGGGAATTACTACAGGCCGTTTCATA
TGAACTTAAGGGCGTGCGCTGCCTCATCCAAGAATCGCAAAAGGCGCTGG
AGGACGGGGTGATATCCAAGGCCGAAGCCAAGGAGATACTGAGGCAGGCA
CAGGTGGATAAGAAAAAGCTGGAGTACGAATCATGGTGCCTGAATCAGGC
GTTGGACTCATTTGCGGCTCTGAGCGCGGCTATTGACACAAATCGGCTCA
AGGATGCAGGAAAAGGACTGTATACTGGCATGGTTGCTTGTGTTGCTTCG
GCCCACAGCGTGACTGTGCGTAAATTGTCTTTAGCGTTTGATTTGGGGAG
TATTTTATCAGGGAATATTGCCTGTGTCATGTGTTCCCTGATGGAGCGCA
TACACAGTCAAGAGATGGCTCGTTTTTTACCTCCCGAGACAAGAAAATTT
TTCAAAATGTCCATCCAAATCGCAGGAATGATTCAAGGTCTCTTGATCAT
TAACACCGTCGTACCCAAAATGAGTTTGCGCATCTCCAGTGCTGCCTTGG
GGGCGGCCTGGCTGTCGGATGCCATCGCTGAGACTGTTGATCCATGGTTG
AAGGCACATGAGGGATGGGAACCAATAGCCGGACGCTTGCCTTACGCGGT
TTTGCAAGTGAGCCTGACTGTTGGAGGGTACTATGTGCAAAAGCATGTAT
ACCCAGGCAGGTTTCCCTTATTAGTGGAGCGTTTTTTGGCACCTTTGGGC
TTTGTGGAGAGTCGGCTGAAAGATTTCAATGGGTTGTTTAAAAAGTAGAT
TGGGGATTAGCTTGTAAATAAATTGATGCATGTACATTAAACTTGTTGTG
CTCGTGGGGGGGCATGCGTACGGGCGGG

Coding sequence (CDS) from alignment at scaffold_6:368307..370084+

>mRNA_3455 ID=mRNA_3455|Name=jgi.p|Nanoce1779_2|582172|organism=Nannochloropsis oceanica|type=CDS|length=1263bp|location=Sequence derived from alignment at scaffold_6:368307..370084+ (Nannochloropsis oceanica)
ATGCCCCATACATCCTTATTCTCTGCTATGTCACGACGCTCTCTTCCACC
CATGCAGCGACCCCGACCAGCATTTCATCTCTGGCCCGAACTAAACCCCC
ATGAGCACGAAGACCGCAATCTAGGACGTTCCAGAGTATGGCAACGATTT
AGCAACGCGACGGGGCACTCCGACAGGGTGATTGAGGTCGACAGGAAAAC
GGACTTCCAAGGTTTCCTAAAGAAAGAGCGGAATGCCTTAGAACTTTTCG
AGAGTAATTGGGCATTAACCTGGACGCGATGGAAACCCTTTGTTTCTATT
GGAGCCAAGGGCATGGTCGGTGCGACGATGTGCCTTGCAGGGGCCCATTT
TGGGAGATGCGTTGTTTTGTTCCACACGATGCGCGTGACGGGCTGGCCTG
CTTTTCAGAATGCGTTGGTGGAGTTGGGGAAGAGCTACAGTGCCGCACGG
GAGGTGGTAAAGGCAGAGGTGGGTAAAGTGGTAAGGCCTCGGGAATTACT
ACAGGCCGTTTCATATGAACTTAAGGGCGTGCGCTGCCTCATCCAAGAAT
CGCAAAAGGCGCTGGAGGACGGGGTGATATCCAAGGCCGAAGCCAAGGAG
ATACTGAGGCAGGCACAGGTGGATAAGAAAAAGCTGGAGTACGAATCATG
GTGCCTGAATCAGGCGTTGGACTCATTTGCGGCTCTGAGCGCGGCTATTG
ACACAAATCGGCTCAAGGATGCAGGAAAAGGACTGTATACTGGCATGGTT
GCTTGTGTTGCTTCGGCCCACAGCGTGACTGTGCGTAAATTGTCTTTAGC
GTTTGATTTGGGGAGTATTTTATCAGGGAATATTGCCTGTGTCATGTGTT
CCCTGATGGAGCGCATACACAGTCAAGAGATGGCTCGTTTTTTACCTCCC
GAGACAAGAAAATTTTTCAAAATGTCCATCCAAATCGCAGGAATGATTCA
AGGTCTCTTGATCATTAACACCGTCGTACCCAAAATGAGTTTGCGCATCT
CCAGTGCTGCCTTGGGGGCGGCCTGGCTGTCGGATGCCATCGCTGAGACT
GTTGATCCATGGTTGAAGGCACATGAGGGATGGGAACCAATAGCCGGACG
CTTGCCTTACGCGGTTTTGCAAGTGAGCCTGACTGTTGGAGGGTACTATG
TGCAAAAGCATGTATACCCAGGCAGGTTTCCCTTATTAGTGGAGCGTTTT
TTGGCACCTTTGGGCTTTGTGGAGAGTCGGCTGAAAGATTTCAATGGGTT
GTTTAAAAAGTAG

Synonyms

Publications