jgi.p|Nanoce1779_2|669424, mRNA_3454 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669424
Unique NamemRNA_3454
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1459
Alignment locationscaffold_6:366873..368331 -

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Properties
Property NameValue
TranscriptId669510
TrackFilteredModels2
ProteinId669424
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:366873..368331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669424gene_3454Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3454CDS_3454Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669424mRNA_3454-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3454 ID=mRNA_3454|Name=jgi.p|Nanoce1779_2|669424|organism=Nannochloropsis oceanica|type=mRNA|length=1459bp
AAGGCTGGGAAGGAGGGTGGGTGAGGAGGTCGACGCAGACCGGAACGTTT
CTGAACCCACTCCACCAACTACACTATGCACACAATTCATAGCACGCACG
ATGGCGAGTTTCAAGGACCAGCTAGCGGGCTTTAAAGGGCTGCGTGCGAC
GCTCGAAAAGAAAGAAGTCAAGGAAGCAGCCCAGGCACGCAAAGCACAGG
CGGCCAAGCAGGCCACAAAGGAAATAGGGGAGCGTCTCCTCCGTGCTGGG
GCCACCGTACGGGCGAACATGCTCCCAATCCTGGGCAATACTGCTGCACC
GATCACGGAAAAACGCACACTGGCTCTGCTATTCCTGGTTATTGACGGCC
TGCCCTTCGAGGACCAATGGCGTGAATGGTTGCGGCGACAAGACGGGCGG
ACAGAGGTCAAAGTGTGGGTTCACGCTAAGCATCCAGAAAAAATCTCTTC
TTCCTGGGTACGCAAAAGGCTGCTTCCGACATCCTATCGCCCTGCGTGGG
GCTCGGTTGAAATAACGCGCGCCGAGCTGGAGCTCCTGCGTGTGGCCATT
GAGGACCCCGCAGAAATGCAGCGCTTCCTCTTTGCTTCTGAGTCATGCCT
CCCCCTCCTCCCCCTCGACCGAGCGGCCGACGCGCTTTTTGCCACGGCAT
CTAAAAGTTGGGTGAAATTCACAAATGTGCCTAATAATGGTTATTCGAAT
CAACTTCAATTTCAACCTCTAATATCGGTAGGCGTCCCCTCTGAGAGTGT
ATGGAAAGCAGACCAATGGGTAGCATTGACAAGAACCCACGCGCTTGCAT
TGCTGGCCTTGCCCAAGTTGTTTGGTCAAGAGGTGTGGTCGTTGTTCAGG
GGGGTGTCGGCGTCTGACGAGATGTACTTTCCGACCTGTCTGGCGGTGCT
GGGGGAGTTGGGATCAACGACGCAAATGGCAGCGGTGGAGGGGAACACTC
CATGTGAAGGAGCGGTACCGAATGGTAGCAGCATGAGCAGCATTATGAGA
AGTGGAGGAAGTAACGTACCGCCGTCCTCAAACACGACCCACCAAAAACA
GCAATCACGAAGCAGCAGCAGCGGCAGCAGCAGCAGTCGCTGTAGTAATG
TGATAAATCGTCGACTCACCTACTGCTGTTGGGGAGACTCGCCGAAGAGC
CCTGAGACATACCAAGGACTACCAGCAGCAGTCTTGGAAAAGGGGGTGAA
AGAAGGGTGTTTGTTTATTAGGAAATTCAAGGCGGGGAGTGTAAGTTTGG
AGGAATGGATGAGGCACATGCAAGCCCAGGCGCAGGGGGTGGGGGGGTGG
AACCATAGGGACGAGGATTGTGATGGGGGTGCTGGAGCGAAGGAGGAGGA
GGGGCAGTCGAAGAGAGAAAGAAGTGTAGTAGAAGAAGGAGGAGAGGGGA
CAGCGGCAAGGCAGAAGAGACCGAAAAACGAGGAGGAATGCCCCAGAGAA
AAACAATAA
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protein sequence of jgi.p|Nanoce1779_2|669424

>mRNA_3454-protein ID=mRNA_3454-protein|Name=jgi.p|Nanoce1779_2|669424|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MASFKDQLAGFKGLRATLEKKEVKEAAQARKAQAAKQATKEIGERLLRAG
ATVRANMLPILGNTAAPITEKRTLALLFLVIDGLPFEDQWREWLRRQDGR
TEVKVWVHAKHPEKISSSWVRKRLLPTSYRPAWGSVEITRAELELLRVAI
EDPAEMQRFLFASESCLPLLPLDRAADALFATASKSWVKFTNVPNNGYSN
QLQFQPLISVGVPSESVWKADQWVALTRTHALALLALPKLFGQEVWSLFR
GVSASDEMYFPTCLAVLGELGSTTQMAAVEGNTPCEGAVPNGSSMSSIMR
SGGSNVPPSSNTTHQKQQSRSSSSGSSSSRCSNVINRRLTYCCWGDSPKS
PETYQGLPAAVLEKGVKEGCLFIRKFKAGSVSLEEWMRHMQAQAQGVGGW
NHRDEDCDGGAGAKEEEGQSKRERSVVEEGGEGTAARQKRPKNEEECPRE
KQ*
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mRNA from alignment at scaffold_6:366873..368331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3454 ID=mRNA_3454|Name=jgi.p|Nanoce1779_2|669424|organism=Nannochloropsis oceanica|type=mRNA|length=1459bp|location=Sequence derived from alignment at scaffold_6:366873..368331- (Nannochloropsis oceanica)
AAGGCTGGGAAGGAGGGTGGGTGAGGAGGTCGACGCAGACCGGAACGTTT
CTGAACCCACTCCACCAACTACACTATGCACACAATTCATAGCACGCACG
ATGGCGAGTTTCAAGGACCAGCTAGCGGGCTTTAAAGGGCTGCGTGCGAC
GCTCGAAAAGAAAGAAGTCAAGGAAGCAGCCCAGGCACGCAAAGCACAGG
CGGCCAAGCAGGCCACAAAGGAAATAGGGGAGCGTCTCCTCCGTGCTGGG
GCCACCGTACGGGCGAACATGCTCCCAATCCTGGGCAATACTGCTGCACC
GATCACGGAAAAACGCACACTGGCTCTGCTATTCCTGGTTATTGACGGCC
TGCCCTTCGAGGACCAATGGCGTGAATGGTTGCGGCGACAAGACGGGCGG
ACAGAGGTCAAAGTGTGGGTTCACGCTAAGCATCCAGAAAAAATCTCTTC
TTCCTGGGTACGCAAAAGGCTGCTTCCGACATCCTATCGCCCTGCGTGGG
GCTCGGTTGAAATAACGCGCGCCGAGCTGGAGCTCCTGCGTGTGGCCATT
GAGGACCCCGCAGAAATGCAGCGCTTCCTCTTTGCTTCTGAGTCATGCCT
CCCCCTCCTCCCCCTCGACCGAGCGGCCGACGCGCTTTTTGCCACGGCAT
CTAAAAGTTGGGTGAAATTCACAAATGTGCCTAATAATGGTTATTCGAAT
CAACTTCAATTTCAACCTCTAATATCGGTAGGCGTCCCCTCTGAGAGTGT
ATGGAAAGCAGACCAATGGGTAGCATTGACAAGAACCCACGCGCTTGCAT
TGCTGGCCTTGCCCAAGTTGTTTGGTCAAGAGGTGTGGTCGTTGTTCAGG
GGGGTGTCGGCGTCTGACGAGATGTACTTTCCGACCTGTCTGGCGGTGCT
GGGGGAGTTGGGATCAACGACGCAAATGGCAGCGGTGGAGGGGAACACTC
CATGTGAAGGAGCGGTACCGAATGGTAGCAGCATGAGCAGCATTATGAGA
AGTGGAGGAAGTAACGTACCGCCGTCCTCAAACACGACCCACCAAAAACA
GCAATCACGAAGCAGCAGCAGCGGCAGCAGCAGCAGTCGCTGTAGTAATG
TGATAAATCGTCGACTCACCTACTGCTGTTGGGGAGACTCGCCGAAGAGC
CCTGAGACATACCAAGGACTACCAGCAGCAGTCTTGGAAAAGGGGGTGAA
AGAAGGGTGTTTGTTTATTAGGAAATTCAAGGCGGGGAGTGTAAGTTTGG
AGGAATGGATGAGGCACATGCAAGCCCAGGCGCAGGGGGTGGGGGGGTGG
AACCATAGGGACGAGGATTGTGATGGGGGTGCTGGAGCGAAGGAGGAGGA
GGGGCAGTCGAAGAGAGAAAGAAGTGTAGTAGAAGAAGGAGGAGAGGGGA
CAGCGGCAAGGCAGAAGAGACCGAAAAACGAGGAGGAATGCCCCAGAGAA
AAACAATAA
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Coding sequence (CDS) from alignment at scaffold_6:366873..368331-

>mRNA_3454 ID=mRNA_3454|Name=jgi.p|Nanoce1779_2|669424|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_6:366873..368331- (Nannochloropsis oceanica)
ATGGCGAGTTTCAAGGACCAGCTAGCGGGCTTTAAAGGGCTGCGTGCGAC
GCTCGAAAAGAAAGAAGTCAAGGAAGCAGCCCAGGCACGCAAAGCACAGG
CGGCCAAGCAGGCCACAAAGGAAATAGGGGAGCGTCTCCTCCGTGCTGGG
GCCACCGTACGGGCGAACATGCTCCCAATCCTGGGCAATACTGCTGCACC
GATCACGGAAAAACGCACACTGGCTCTGCTATTCCTGGTTATTGACGGCC
TGCCCTTCGAGGACCAATGGCGTGAATGGTTGCGGCGACAAGACGGGCGG
ACAGAGGTCAAAGTGTGGGTTCACGCTAAGCATCCAGAAAAAATCTCTTC
TTCCTGGGTACGCAAAAGGCTGCTTCCGACATCCTATCGCCCTGCGTGGG
GCTCGGTTGAAATAACGCGCGCCGAGCTGGAGCTCCTGCGTGTGGCCATT
GAGGACCCCGCAGAAATGCAGCGCTTCCTCTTTGCTTCTGAGTCATGCCT
CCCCCTCCTCCCCCTCGACCGAGCGGCCGACGCGCTTTTTGCCACGGCAT
CTAAAAGTTGGGTGAAATTCACAAATGTGCCTAATAATGGTTATTCGAAT
CAACTTCAATTTCAACCTCTAATATCGGTAGGCGTCCCCTCTGAGAGTGT
ATGGAAAGCAGACCAATGGGTAGCATTGACAAGAACCCACGCGCTTGCAT
TGCTGGCCTTGCCCAAGTTGTTTGGTCAAGAGGTGTGGTCGTTGTTCAGG
GGGGTGTCGGCGTCTGACGAGATGTACTTTCCGACCTGTCTGGCGGTGCT
GGGGGAGTTGGGATCAACGACGCAAATGGCAGCGGTGGAGGGGAACACTC
CATGTGAAGGAGCGGTACCGAATGGTAGCAGCATGAGCAGCATTATGAGA
AGTGGAGGAAGTAACGTACCGCCGTCCTCAAACACGACCCACCAAAAACA
GCAATCACGAAGCAGCAGCAGCGGCAGCAGCAGCAGTCGCTGTAGTAATG
TGATAAATCGTCGACTCACCTACTGCTGTTGGGGAGACTCGCCGAAGAGC
CCTGAGACATACCAAGGACTACCAGCAGCAGTCTTGGAAAAGGGGGTGAA
AGAAGGGTGTTTGTTTATTAGGAAATTCAAGGCGGGGAGTGTAAGTTTGG
AGGAATGGATGAGGCACATGCAAGCCCAGGCGCAGGGGGTGGGGGGGTGG
AACCATAGGGACGAGGATTGTGATGGGGGTGCTGGAGCGAAGGAGGAGGA
GGGGCAGTCGAAGAGAGAAAGAAGTGTAGTAGAAGAAGGAGGAGAGGGGA
CAGCGGCAAGGCAGAAGAGACCGAAAAACGAGGAGGAATGCCCCAGAGAA
AAACAATAA
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Synonyms
Publications