jgi.p|Nanoce1779_2|582166, mRNA_3453 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582166
Unique Name	mRNA_3453
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1289
Alignment location	scaffold_6:364769..366306 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582252
Track	FilteredModels2
ProteinId	582166

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:364769..366306 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582166	gene_3453	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582166	mRNA_3453-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3453	CDS_3453	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:364769..366306+
coding sequence from alignment at scaffold_6:364769..366306+

mRNA sequence

>mRNA_3453 ID=mRNA_3453|Name=jgi.p|Nanoce1779_2|582166|organism=Nannochloropsis oceanica|type=mRNA|length=1289bp
ACGACAGCACTGCTAGCACACCGAGAACAACGACCGGGCAAAGCCACTGA
AAACGCAGCGGGGCCACCACCAGCAACATCGTCGCACACATTCGTGGAGG
CGGAAGCGGAGCAATGAGCTATACAGGCACCTATGCCAATAGCAGCAATG
GCAATGGTACCAGCATCAAGAGTAACAGCAAGACCAATGGCAGCACCAAA
AGCAGCAGCAGCAACAACAGCAGCGCTGGAGCCTGTCAAAGCATCTGCAC
CCTTCTCGTCGGCATCCTGGCTATCTTGCTGAGCGGTGCCGTCAACCTCT
CCTACTATCCCCCCAAATCGTTTCCGCGAGTCTCCATCCACGACGAATTT
CTTTCTGAGGCTGGAGGAAACTTTACCTACCTTTCCAAAGGCCGCGTGCA
CTATGTCTTGCGCGAGCCCGCTGAACCCTCCCCCTTGCCCCCCGTCGTAT
TAGTCCACGGCTTTTCTATGGGCTGTGTCATATGGAATGATATTGCCGAA
GCTCTTGTTGAGCGAGGAGGTCGTCGTGTCCTCGCATTTGATTTATTCGG
AAGGGGCTACAGCGATGCGGCCTTTCCATGCGACCTGGAGTTGTTCACCG
GCCAATTATCCGAATTGTTGTTTTCGCTGCAACCAATCTTGGGTCCTGGT
CCATATGATATATTCGGGACCTCGATGGGAGGGGCGATTGCCGTTCATTT
CACTCATCTGTACCCTCAGCATGTGCGTCAGCTCGTGTTGCTTGCCCCGG
CGGGTCTACCGGTCCATGTGCCCTTCACGGCGCTCTTGGGGAAGTTACCC
TTGATTGGGGATATCTTCATGCCATTGCTGGGACCCATTTCATTGAAGAC
ACACGCGAGGAAAGGACATGCCCACCCGGATGACCCGGCCTTGAAGCCTA
TTTTTGCGGCGATGGGGAGGAGGCTCATGAGGCAAACCAAGCTGAACCCC
GGATTCTTCCCGGCGTTGCTGTCGACTTTGAGGAACTTCCCGCTGAATGA
ATTGGAGTGGGCGTATGAAAGCATAGGGAAAACGAGGCGGGAGGGGACGG
TATTAGTCGTGTGGGGGGATAAGGATGAGGTGACGCCGTTCACGCATGCG
GGGAGGGTGCTTGAGATGTTGGAGGATGGGAGGAAGAAGGTGGAATTGCT
CGTTTTGACGGATTGTGGGCATGTGGATGCATTGGAGGTGCCGAGGAGCA
TTGATGAGATGGTGCCACCGCTAATTAAGCACTTGGCAGGGGAGGGATTG
TGGTAGGGGGAGAAGAAAGGGTGGCTGATCGCGCTGAAG

protein sequence of jgi.p|Nanoce1779_2|582166

>mRNA_3453-protein ID=mRNA_3453-protein|Name=jgi.p|Nanoce1779_2|582166|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MSYTGTYANSSNGNGTSIKSNSKTNGSTKSSSSNNSSAGACQSICTLLVG
ILAILLSGAVNLSYYPPKSFPRVSIHDEFLSEAGGNFTYLSKGRVHYVLR
EPAEPSPLPPVVLVHGFSMGCVIWNDIAEALVERGGRRVLAFDLFGRGYS
DAAFPCDLELFTGQLSELLFSLQPILGPGPYDIFGTSMGGAIAVHFTHLY
PQHVRQLVLLAPAGLPVHVPFTALLGKLPLIGDIFMPLLGPISLKTHARK
GHAHPDDPALKPIFAAMGRRLMRQTKLNPGFFPALLSTLRNFPLNELEWA
YESIGKTRREGTVLVVWGDKDEVTPFTHAGRVLEMLEDGRKKVELLVLTD
CGHVDALEVPRSIDEMVPPLIKHLAGEGLW*

mRNA from alignment at scaffold_6:364769..366306+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3453 ID=mRNA_3453|Name=jgi.p|Nanoce1779_2|582166|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at scaffold_6:364769..366306+ (Nannochloropsis oceanica)
ACGACAGCACTGCTAGCACACCGAGAACAACGACCGGGCAAAGCCACTGA
AAACGCAGCGGGGCCACCACCAGCAACATCGTCGCACACATTCGTGGAGG
CGGAAGCGGAGCAATGAGCTATACAGGTAAGTCCCCTCCTTTTTGACCAG
ACATGACCAGTCTGCAGACCCAGGAGAGGAGTGTCGACCAGTCTGCAGAC
CCAGGAGAGGAGTGTCAAGGAGGGGCGTGGATTGAGTGTGTGCCCGTCTG
TCGAAGTATTTCGTCGTGCAGCCCTAGCCTCCCGTCCCTCATTCCCCCTT
CCCCTCGCTGCCTCGCTTGACAACCACGTCCAGACGTGCAGCGCTGATCC
TCTTCCCCACTCAAACACAATCCAGGCACCTATGCCAATAGCAGCAATGG
CAATGGTACCAGCATCAAGAGTAACAGCAAGACCAATGGCAGCACCAAAA
GCAGCAGCAGCAACAACAGCAGCGCTGGAGCCTGTCAAAGCATCTGCACC
CTTCTCGTCGGCATCCTGGCTATCTTGCTGAGCGGTGCCGTCAACCTCTC
CTACTATCCCCCCAAATCGTTTCCGCGAGTCTCCATCCACGACGAATTTC
TTTCTGAGGCTGGAGGAAACTTTACCTACCTTTCCAAAGGCCGCGTGCAC
TATGTCTTGCGCGAGCCCGCTGAACCCTCCCCCTTGCCCCCCGTCGTATT
AGTCCACGGCTTTTCTATGGGCTGTGTCATATGGAATGATATTGCCGAAG
CTCTTGTTGAGCGAGGAGGTCGTCGTGTCCTCGCATTTGATTTATTCGGA
AGGGGCTACAGCGATGCGGCCTTTCCATGCGACCTGGAGTTGTTCACCGG
CCAATTATCCGAATTGTTGTTTTCGCTGCAACCAATCTTGGGTCCTGGTC
CATATGATATATTCGGGACCTCGATGGGAGGGGCGATTGCCGTTCATTTC
ACTCATCTGTACCCTCAGCATGTGCGTCAGCTCGTGTTGCTTGCCCCGGC
GGGTCTACCGGTCCATGTGCCCTTCACGGCGCTCTTGGGGAAGTTACCCT
TGATTGGGGATATCTTCATGCCATTGCTGGGACCCATTTCATTGAAGACA
CACGCGAGGAAAGGACATGCCCACCCGGATGACCCGGCCTTGAAGCCTAT
TTTTGCGGCGATGGGGAGGAGGCTCATGAGGCAAACCAAGCTGAACCCCG
GATTCTTCCCGGCGTTGCTGTCGACTTTGAGGAACTTCCCGCTGAATGAA
TTGGAGTGGGCGTATGAAAGCATAGGGAAAACGAGGCGGGAGGGGACGGT
ATTAGTCGTGTGGGGGGATAAGGATGAGGTGACGCCGTTCACGCATGCGG
GGAGGGTGCTTGAGATGTTGGAGGATGGGAGGAAGAAGGTGGAATTGCTC
GTTTTGACGGATTGTGGGCATGTGGATGCATTGGAGGTGCCGAGGAGCAT
TGATGAGATGGTGCCACCGCTAATTAAGCACTTGGCAGGGGAGGGATTGT
GGTAGGGGGAGAAGAAAGGGTGGCTGATCGCGCTGAAG

Coding sequence (CDS) from alignment at scaffold_6:364769..366306+

>mRNA_3453 ID=mRNA_3453|Name=jgi.p|Nanoce1779_2|582166|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_6:364769..366306+ (Nannochloropsis oceanica)
ATGAGCTATACAGGCACCTATGCCAATAGCAGCAATGGCAATGGTACCAG
CATCAAGAGTAACAGCAAGACCAATGGCAGCACCAAAAGCAGCAGCAGCA
ACAACAGCAGCGCTGGAGCCTGTCAAAGCATCTGCACCCTTCTCGTCGGC
ATCCTGGCTATCTTGCTGAGCGGTGCCGTCAACCTCTCCTACTATCCCCC
CAAATCGTTTCCGCGAGTCTCCATCCACGACGAATTTCTTTCTGAGGCTG
GAGGAAACTTTACCTACCTTTCCAAAGGCCGCGTGCACTATGTCTTGCGC
GAGCCCGCTGAACCCTCCCCCTTGCCCCCCGTCGTATTAGTCCACGGCTT
TTCTATGGGCTGTGTCATATGGAATGATATTGCCGAAGCTCTTGTTGAGC
GAGGAGGTCGTCGTGTCCTCGCATTTGATTTATTCGGAAGGGGCTACAGC
GATGCGGCCTTTCCATGCGACCTGGAGTTGTTCACCGGCCAATTATCCGA
ATTGTTGTTTTCGCTGCAACCAATCTTGGGTCCTGGTCCATATGATATAT
TCGGGACCTCGATGGGAGGGGCGATTGCCGTTCATTTCACTCATCTGTAC
CCTCAGCATGTGCGTCAGCTCGTGTTGCTTGCCCCGGCGGGTCTACCGGT
CCATGTGCCCTTCACGGCGCTCTTGGGGAAGTTACCCTTGATTGGGGATA
TCTTCATGCCATTGCTGGGACCCATTTCATTGAAGACACACGCGAGGAAA
GGACATGCCCACCCGGATGACCCGGCCTTGAAGCCTATTTTTGCGGCGAT
GGGGAGGAGGCTCATGAGGCAAACCAAGCTGAACCCCGGATTCTTCCCGG
CGTTGCTGTCGACTTTGAGGAACTTCCCGCTGAATGAATTGGAGTGGGCG
TATGAAAGCATAGGGAAAACGAGGCGGGAGGGGACGGTATTAGTCGTGTG
GGGGGATAAGGATGAGGTGACGCCGTTCACGCATGCGGGGAGGGTGCTTG
AGATGTTGGAGGATGGGAGGAAGAAGGTGGAATTGCTCGTTTTGACGGAT
TGTGGGCATGTGGATGCATTGGAGGTGCCGAGGAGCATTGATGAGATGGT
GCCACCGCTAATTAAGCACTTGGCAGGGGAGGGATTGTGGTAGATGAGCT
ATACAGGCACCTATGCCAATAGCAGCAATGGCAATGGTACCAGCATCAAG
AGTAACAGCAAGACCAATGGCAGCACCAAAAGCAGCAGCAGCAACAACAG
CAGCGCTGGAGCCTGTCAAAGCATCTGCACCCTTCTCGTCGGCATCCTGG
CTATCTTGCTGAGCGGTGCCGTCAACCTCTCCTACTATCCCCCCAAATCG
TTTCCGCGAGTCTCCATCCACGACGAATTTCTTTCTGAGGCTGGAGGAAA
CTTTACCTACCTTTCCAAAGGCCGCGTGCACTATGTCTTGCGCGAGCCCG
CTGAACCCTCCCCCTTGCCCCCCGTCGTATTAGTCCACGGCTTTTCTATG
GGCTGTGTCATATGGAATGATATTGCCGAAGCTCTTGTTGAGCGAGGAGG
TCGTCGTGTCCTCGCATTTGATTTATTCGGAAGGGGCTACAGCGATGCGG
CCTTTCCATGCGACCTGGAGTTGTTCACCGGCCAATTATCCGAATTGTTG
TTTTCGCTGCAACCAATCTTGGGTCCTGGTCCATATGATATATTCGGGAC
CTCGATGGGAGGGGCGATTGCCGTTCATTTCACTCATCTGTACCCTCAGC
ATGTGCGTCAGCTCGTGTTGCTTGCCCCGGCGGGTCTACCGGTCCATGTG
CCCTTCACGGCGCTCTTGGGGAAGTTACCCTTGATTGGGGATATCTTCAT
GCCATTGCTGGGACCCATTTCATTGAAGACACACGCGAGGAAAGGACATG
CCCACCCGGATGACCCGGCCTTGAAGCCTATTTTTGCGGCGATGGGGAGG
AGGCTCATGAGGCAAACCAAGCTGAACCCCGGATTCTTCCCGGCGTTGCT
GTCGACTTTGAGGAACTTCCCGCTGAATGAATTGGAGTGGGCGTATGAAA
GCATAGGGAAAACGAGGCGGGAGGGGACGGTATTAGTCGTGTGGGGGGAT
AAGGATGAGGTGACGCCGTTCACGCATGCGGGGAGGGTGCTTGAGATGTT
GGAGGATGGGAGGAAGAAGGTGGAATTGCTCGTTTTGACGGATTGTGGGC
ATGTGGATGCATTGGAGGTGCCGAGGAGCATTGATGAGATGGTGCCACCG
CTAATTAAGCACTTGGCAGGGGAGGGATTGTGGTAG

Synonyms

Publications