jgi.p|Nanoce1779_2|577053, mRNA_345 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577053
Unique NamemRNA_345
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1196
Alignment locationscaffold_3:848319..849732 -

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Properties
Property NameValue
TranscriptId577139
TrackFilteredModels2
ProteinId577053
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:848319..849732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577053gene_345Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577053mRNA_345-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_345CDS_345Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_345 ID=mRNA_345|Name=jgi.p|Nanoce1779_2|577053|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp
GGCCCAAAGCATCAGCGTTGGCCCTTGCCCTTGCATGCAGTGCTCTTAAG
TAAGCCCTTATTTTTTGTCGTCAGGGTGAGTACTTTCAATTATCTGACGC
AACAAATGCTCTCCCACCATTCACAGTCGCTCCTGTGCCGTCTACCTCCT
CACCCCCACCTTCATCCAAGAACAAGAGAATGCGACCGCTCTCACCCGTC
CCACTGCAACTAGGCCTCGTCCTCCTCATCATCGTGGCGCTGGCAAGAGT
CACGCAGGGCTTTGTCGTGGTGGTGCCGAGGCAGCAGGTGGGAAGGCCGT
CATGTAGGCAGACTGTTGTGTCCATGTCCTCCACCGAGATTGACGAAAGC
AGTTTGGGTCTCACTCCCCGTTTGCTTGAGGTCTCCCGTGCCTTTCAGCT
GATGGACGAACGCACGCGCGTGCAGCACTTGTTGGCCATGGCGGGTGCAC
TCAAGCCTTTTAAGGACTTCCGGAAGCTGCCTGAGAATAAGGTGCCCGGG
TGCTTGTCCACAGTGTATGTGCATGCGTACTTGAAGGAGGGCAAGGTCTA
TTTCGAGGGGGATTCAGACGCGCAATTGACCAAGGGATTGGTGGCGTTGT
TGATTGAGGGGATGTCGGGATGTGAGTCGCATGAAATTCAGGCGGTGAAG
CCGGAATTTATTAAGTTCGCGGGGATCGCGGCGAGTTTGACGCCTGGCCG
CAACAACGGCTTCCTCAACATGCTTGCCATGCTCAAACGCAAGGCCGTTG
AAGCCGAGGCAAAGGGGGAGGGCACAGGCCAGGAAGAGCCCGAAATCGAA
TTCGAAGAAATCATCACCAGGCCTGTCTACAGCAGCACCATGAAAAAACT
TATCAATTTCTTAAAGCCGAAACAACTAATCCTCACCGACGATTCGGCTC
AGCACGCCGGGCATGCAGGTGCAAAGGGCTTGGACGGTGAGAGTCATTTT
AGTCTCAAAATTGTGGCGGACTGCTTCGAGGGCCTTTCGTTGGTGCAACG
GCACAAGTTGATTTACACGGTTTTAACGGCCGAGATGCAGCAGATCCATG
CCTTGTCGATTGATGCTAAGACCCCTGCCGAGGCAGGATTGTAGTGGAGG
GGAAGGAGAGGGAGGGAGGGAGGAAGTGAGGAAAAGGAGAGTGAGAGGGA
GAAAAGGGGACGGGGGGAGGAGAATAGGAGGATGTCTTGAAAGTAT
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protein sequence of jgi.p|Nanoce1779_2|577053

>mRNA_345-protein ID=mRNA_345-protein|Name=jgi.p|Nanoce1779_2|577053|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MRPLSPVPLQLGLVLLIIVALARVTQGFVVVVPRQQVGRPSCRQTVVSMS
STEIDESSLGLTPRLLEVSRAFQLMDERTRVQHLLAMAGALKPFKDFRKL
PENKVPGCLSTVYVHAYLKEGKVYFEGDSDAQLTKGLVALLIEGMSGCES
HEIQAVKPEFIKFAGIAASLTPGRNNGFLNMLAMLKRKAVEAEAKGEGTG
QEEPEIEFEEIITRPVYSSTMKKLINFLKPKQLILTDDSAQHAGHAGAKG
LDGESHFSLKIVADCFEGLSLVQRHKLIYTVLTAEMQQIHALSIDAKTPA
EAGL*
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mRNA from alignment at scaffold_3:848319..849732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_345 ID=mRNA_345|Name=jgi.p|Nanoce1779_2|577053|organism=Nannochloropsis oceanica|type=mRNA|length=1414bp|location=Sequence derived from alignment at scaffold_3:848319..849732- (Nannochloropsis oceanica)
GGCCCAAAGCATCAGCGTTGGCCCTTGCCCTTGCATGCAGTGCTCTTAAG
TAAGCCCTTATTTTTTGTCGTCAGGGTGAGTACTTTCAATTATCTGACGC
AACAAATGCTCTCCCACCATTCACAGTCGCTCCTGTGCCGTCTACCTCCT
CACCCCCACCTTCATCCAAGAACAAGAGAATGCGACCGCTCTCACCCGTC
CCACTGCAACTAGGCCTCGTCCTCCTCATCATCGTGGCGCTGGCAAGAGT
CACGCAGGGCTTTGTCGTGGTGGTGCCGAGGCAGCAGGTGGGAAGGCCGT
CATGTAGGCAGACTGTTGTGTCCATGTCCTCCACCGAGATTGACGAAAGC
AGTTTGGGTCTCACTCCCCGTTTGCTTGAGGTCTCCCGTGCCTTTCAGCT
GATGGACGAACGCACGCGCGTGCAGCACTTGTTGGCCATGGCGGGTGCAC
TCAAGCCTTTTAAGGACTTCCGGAAGCTGCCTGAGAATAAGGTGCCCGGG
TGCTTGTCCACAGTGTATGTGCATGCGTACTTGAAGGAGGGCAAGGTCTA
TTTCGAGGGGGATTCAGACGCGCAATTGACCAAGGGATTGGTGGCGTTGT
TGATTGAGGGGATGTCGGGATGTGAGTCGCATGAAATTCAGGCGGTGAAG
CCGGAATTTATTAAGTTCGCGGGGATCGCGGCGAGTTTGACGCCTGGGTG
AGTCATTTGTGAGAGGGGAGGGAAAGGGGGGTAGGGGTAGTAATGCAGGA
ATACTGATGATAAAAAAGAGATTCATGGAAGAGAAGAGACAGAAGGTCTT
GACACTCTTCGTCACTGAATGTACTGATTAATCTAGGTCTTGAGGCCAAA
GGAAAAGAACATGTTGCTCACTTTTCCTTCGTGCCCCTCCCTCACTCTTT
TCCCCTCCGCCACAGCCGCAACAACGGCTTCCTCAACATGCTTGCCATGC
TCAAACGCAAGGCCGTTGAAGCCGAGGCAAAGGGGGAGGGCACAGGCCAG
GAAGAGCCCGAAATCGAATTCGAAGAAATCATCACCAGGCCTGTCTACAG
CAGCACCATGAAAAAACTTATCAATTTCTTAAAGCCGAAACAACTAATCC
TCACCGACGATTCGGCTCAGCACGCCGGGCATGCAGGTGCAAAGGGCTTG
GACGGTGAGAGTCATTTTAGTCTCAAAATTGTGGCGGACTGCTTCGAGGG
CCTTTCGTTGGTGCAACGGCACAAGTTGATTTACACGGTTTTAACGGCCG
AGATGCAGCAGATCCATGCCTTGTCGATTGATGCTAAGACCCCTGCCGAG
GCAGGATTGTAGTGGAGGGGAAGGAGAGGGAGGGAGGGAGGAAGTGAGGA
AAAGGAGAGTGAGAGGGAGAAAAGGGGACGGGGGGAGGAGAATAGGAGGA
TGTCTTGAAAGTAT
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Coding sequence (CDS) from alignment at scaffold_3:848319..849732-

>mRNA_345 ID=mRNA_345|Name=jgi.p|Nanoce1779_2|577053|organism=Nannochloropsis oceanica|type=CDS|length=1830bp|location=Sequence derived from alignment at scaffold_3:848319..849732- (Nannochloropsis oceanica)
CCGCAACAACGGCTTCCTCAACATGCTTGCCATGCTCAAACGCAAGGCCG
TTGAAGCCGAGGCAAAGGGGGAGGGCACAGGCCAGGAAGAGCCCGAAATC
GAATTCGAAGAAATCATCACCAGGCCTGTCTACAGCAGCACCATGAAAAA
ACTTATCAATTTCTTAAAGCCGAAACAACTAATCCTCACCGACGATTCGG
CTCAGCACGCCGGGCATGCAGGTGCAAAGGGCTTGGACGGTGAGAGTCAT
TTTAGTCTCAAAATTGTGGCGGACTGCTTCGAGGGCCTTTCGTTGGTGCA
ACGGCACAAGTTGATTTACACGGTTTTAACGGCCGAGATGCAGCAGATCC
ATGCCTTGTCGATTGATGCTAAGACCCCTGCCGAGGCAGGATTGTAGATG
CGACCGCTCTCACCCGTCCCACTGCAACTAGGCCTCGTCCTCCTCATCAT
CGTGGCGCTGGCAAGAGTCACGCAGGGCTTTGTCGTGGTGGTGCCGAGGC
AGCAGGTGGGAAGGCCGTCATGTAGGCAGACTGTTGTGTCCATGTCCTCC
ACCGAGATTGACGAAAGCAGTTTGGGTCTCACTCCCCGTTTGCTTGAGGT
CTCCCGTGCCTTTCAGCTGATGGACGAACGCACGCGCGTGCAGCACTTGT
TGGCCATGGCGGGTGCACTCAAGCCTTTTAAGGACTTCCGGAAGCTGCCT
GAGAATAAGGTGCCCGGGTGCTTGTCCACAGTGTATGTGCATGCGTACTT
GAAGGAGGGCAAGGTCTATTTCGAGGGGGATTCAGACGCGCAATTGACCA
AGGGATTGGTGGCGTTGTTGATTGAGGGGATGTCGGGATGTGAGTCGCAT
GAAATTCAGGCGGTGAAGCCGGAATTTATTAAGTTCGCGGGGATCGCGGC
GAGTTTGACGCCTGGCCGCAACAACGGCTTCCTCAACATGCTTGCCATGC
TCAAACGCAAGGCCGTTGAAGCCGAGGCAAAGGGGGAGGGCACAGGCCAG
GAAGAGCCCGAAATCGAATTCGAAGAAATCATCACCAGGCCTGTCTACAG
CAGCACCATGAAAAAACTTATCAATTTCTTAAAGCCGAAACAACTAATCC
TCACCGACGATTCGGCTCAGCACGCCGGGCATGCAGGTGCAAAGGGCTTG
GACGGTGAGAGTCATTTTAGTCTCAAAATTGTGGCGGACTGCTTCGAGGG
CCTTTCGTTGGTGCAACGGCACAAGTTGATTTACACGGTTTTAACGGCCG
AGATGCAGCAGATCCATGCCTTGTCGATTGATGCTAAGACCCCTGCCGAG
GCAGGATTGTAGATGCGACCGCTCTCACCCGTCCCACTGCAACTAGGCCT
CGTCCTCCTCATCATCGTGGCGCTGGCAAGAGTCACGCAGGGCTTTGTCG
TGGTGGTGCCGAGGCAGCAGGTGGGAAGGCCGTCATGTAGGCAGACTGTT
GTGTCCATGTCCTCCACCGAGATTGACGAAAGCAGTTTGGGTCTCACTCC
CCGTTTGCTTGAGGTCTCCCGTGCCTTTCAGCTGATGGACGAACGCACGC
GCGTGCAGCACTTGTTGGCCATGGCGGGTGCACTCAAGCCTTTTAAGGAC
TTCCGGAAGCTGCCTGAGAATAAGGTGCCCGGGTGCTTGTCCACAGTGTA
TGTGCATGCGTACTTGAAGGAGGGCAAGGTCTATTTCGAGGGGGATTCAG
ACGCGCAATTGACCAAGGGATTGGTGGCGTTGTTGATTGAGGGGATGTCG
GGATGTGAGTCGCATGAAATTCAGGCGGTGAAGCCGGAATTTATTAAGTT
CGCGGGGATCGCGGCGAGTTTGACGCCTGG
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Synonyms
Publications