jgi.p|Nanoce1779_2|582155, mRNA_3449 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582155
Unique NamemRNA_3449
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1116
Alignment locationscaffold_6:353601..354716 +

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Properties
Property NameValue
TranscriptId582241
TrackFilteredModels2
ProteinId582155
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:353601..354716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582155gene_3449Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582155mRNA_3449-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3449CDS_3449Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3449 ID=mRNA_3449|Name=jgi.p|Nanoce1779_2|582155|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp
AACTACAGATGCGGCATTGCTATCGAGCCTCACTACCCTAGAGCAAGACA
TGCTCAACGCCCTGAATGATGCCCTCGCCGAGGGAAAAGTTCACACTGTA
ACCTGTCTATTACAAGCCCACCCATTGCTGGTCTCCACGCGCATGCACGC
CGGGGGCTGGACTCCCTTGCTCCTGGCCAGCTACTACGACCAACCGAAAG
TAGTGGAGATCATCCTAGGCCACGCTGGTGTAGGTGTAAACGATGTAGAT
AACGATATTTTTCGTCGAAGCGCCTTGCATTGGCTTGCAGCACGGGGACA
GGCAGTCTTGATCTTTAAACTGGTGAAGCAGCACGGCGCCTCGGTGGACC
TGCGCGATGCCGAAAATAATACGCCGTTGCACCGGGCCTGTAAAGCCAAC
CAACCCATGACAGTTATGATGCTCTTAATGCTGGGCGCAGACCCGGAAGC
GCGCACGGAGGATGAAGAAGTTCCGGCTGAAGTCACCGATTCCTCCCTCG
CCCGTGCCTTCATTCGCCTTTTTCAAAAAAGCTGCCTCAAGTCCACCCCA
GTACACAAAGGAAGAATTGGAGGAGAGATGCACATGGCGCCTGTCAGCAG
CACGAGCAGCACGAGTTGCAGCTGCGATTTGAGCAATAGCAAGATAGACG
AGAGGCGGTCGTTGCAACCGCAGCAGGAGCACCAGAAGCAGCAGCACGGT
GAGGAATGCCTGGACAAGATTAGTTGTAGCAGTGGCAGCAGCAGCAGCAG
TAGTAGTAGCAGCAGCAGTCAATTACGTTCGGAATCGCCTTGCACGCGGT
CTACGGCGAGCGCGAGCTCATGGGGGGAGAATCAGGCCAAGGAAGGGCAG
GAGGAAGGGAAGGCAGGGATGGAGGATGAAACAACGACTTTGTTGAGAGG
CAAAGTAGCGCCGTCGGGGAAGAAAAACGGAAAGAGGCTCGCAACGACAA
AGACATTGATTAATATGTTTGAAGGTGATAGAGGGAGACCGAGATCGATG
GGTGGGTGTGTAGGTAGGGAACACCAGTGAAATTCAGTAACAAATGTAGC
ATCGGTCCATTTAATCAGAAGGATAACAAGAAAGGGAACAAATCACAAAC
ATATATTCGTTGGTGG
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protein sequence of jgi.p|Nanoce1779_2|582155

>mRNA_3449-protein ID=mRNA_3449-protein|Name=jgi.p|Nanoce1779_2|582155|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MLNALNDALAEGKVHTVTCLLQAHPLLVSTRMHAGGWTPLLLASYYDQPK
VVEIILGHAGVGVNDVDNDIFRRSALHWLAARGQAVLIFKLVKQHGASVD
LRDAENNTPLHRACKANQPMTVMMLLMLGADPEARTEDEEVPAEVTDSSL
ARAFIRLFQKSCLKSTPVHKGRIGGEMHMAPVSSTSSTSCSCDLSNSKID
ERRSLQPQQEHQKQQHGEECLDKISCSSGSSSSSSSSSSSQLRSESPCTR
STASASSWGENQAKEGQEEGKAGMEDETTTLLRGKVAPSGKKNGKRLATT
KTLINMFEGDRGRPRSMGGCVGREHQ*
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mRNA from alignment at scaffold_6:353601..354716+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3449 ID=mRNA_3449|Name=jgi.p|Nanoce1779_2|582155|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp|location=Sequence derived from alignment at scaffold_6:353601..354716+ (Nannochloropsis oceanica)
AACTACAGATGCGGCATTGCTATCGAGCCTCACTACCCTAGAGCAAGACA
TGCTCAACGCCCTGAATGATGCCCTCGCCGAGGGAAAAGTTCACACTGTA
ACCTGTCTATTACAAGCCCACCCATTGCTGGTCTCCACGCGCATGCACGC
CGGGGGCTGGACTCCCTTGCTCCTGGCCAGCTACTACGACCAACCGAAAG
TAGTGGAGATCATCCTAGGCCACGCTGGTGTAGGTGTAAACGATGTAGAT
AACGATATTTTTCGTCGAAGCGCCTTGCATTGGCTTGCAGCACGGGGACA
GGCAGTCTTGATCTTTAAACTGGTGAAGCAGCACGGCGCCTCGGTGGACC
TGCGCGATGCCGAAAATAATACGCCGTTGCACCGGGCCTGTAAAGCCAAC
CAACCCATGACAGTTATGATGCTCTTAATGCTGGGCGCAGACCCGGAAGC
GCGCACGGAGGATGAAGAAGTTCCGGCTGAAGTCACCGATTCCTCCCTCG
CCCGTGCCTTCATTCGCCTTTTTCAAAAAAGCTGCCTCAAGTCCACCCCA
GTACACAAAGGAAGAATTGGAGGAGAGATGCACATGGCGCCTGTCAGCAG
CACGAGCAGCACGAGTTGCAGCTGCGATTTGAGCAATAGCAAGATAGACG
AGAGGCGGTCGTTGCAACCGCAGCAGGAGCACCAGAAGCAGCAGCACGGT
GAGGAATGCCTGGACAAGATTAGTTGTAGCAGTGGCAGCAGCAGCAGCAG
TAGTAGTAGCAGCAGCAGTCAATTACGTTCGGAATCGCCTTGCACGCGGT
CTACGGCGAGCGCGAGCTCATGGGGGGAGAATCAGGCCAAGGAAGGGCAG
GAGGAAGGGAAGGCAGGGATGGAGGATGAAACAACGACTTTGTTGAGAGG
CAAAGTAGCGCCGTCGGGGAAGAAAAACGGAAAGAGGCTCGCAACGACAA
AGACATTGATTAATATGTTTGAAGGTGATAGAGGGAGACCGAGATCGATG
GGTGGGTGTGTAGGTAGGGAACACCAGTGAAATTCAGTAACAAATGTAGC
ATCGGTCCATTTAATCAGAAGGATAACAAGAAAGGGAACAAATCACAAAC
ATATATTCGTTGGTGG
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Coding sequence (CDS) from alignment at scaffold_6:353601..354716+

>mRNA_3449 ID=mRNA_3449|Name=jgi.p|Nanoce1779_2|582155|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_6:353601..354716+ (Nannochloropsis oceanica)
ATGCTCAACGCCCTGAATGATGCCCTCGCCGAGGGAAAAGTTCACACTGT
AACCTGTCTATTACAAGCCCACCCATTGCTGGTCTCCACGCGCATGCACG
CCGGGGGCTGGACTCCCTTGCTCCTGGCCAGCTACTACGACCAACCGAAA
GTAGTGGAGATCATCCTAGGCCACGCTGGTGTAGGTGTAAACGATGTAGA
TAACGATATTTTTCGTCGAAGCGCCTTGCATTGGCTTGCAGCACGGGGAC
AGGCAGTCTTGATCTTTAAACTGGTGAAGCAGCACGGCGCCTCGGTGGAC
CTGCGCGATGCCGAAAATAATACGCCGTTGCACCGGGCCTGTAAAGCCAA
CCAACCCATGACAGTTATGATGCTCTTAATGCTGGGCGCAGACCCGGAAG
CGCGCACGGAGGATGAAGAAGTTCCGGCTGAAGTCACCGATTCCTCCCTC
GCCCGTGCCTTCATTCGCCTTTTTCAAAAAAGCTGCCTCAAGTCCACCCC
AGTACACAAAGGAAGAATTGGAGGAGAGATGCACATGGCGCCTGTCAGCA
GCACGAGCAGCACGAGTTGCAGCTGCGATTTGAGCAATAGCAAGATAGAC
GAGAGGCGGTCGTTGCAACCGCAGCAGGAGCACCAGAAGCAGCAGCACGG
TGAGGAATGCCTGGACAAGATTAGTTGTAGCAGTGGCAGCAGCAGCAGCA
GTAGTAGTAGCAGCAGCAGTCAATTACGTTCGGAATCGCCTTGCACGCGG
TCTACGGCGAGCGCGAGCTCATGGGGGGAGAATCAGGCCAAGGAAGGGCA
GGAGGAAGGGAAGGCAGGGATGGAGGATGAAACAACGACTTTGTTGAGAG
GCAAAGTAGCGCCGTCGGGGAAGAAAAACGGAAAGAGGCTCGCAACGACA
AAGACATTGATTAATATGTTTGAAGGTGATAGAGGGAGACCGAGATCGAT
GGGTGGGTGTGTAGGTAGGGAACACCAGTGA
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Synonyms
Publications