jgi.p|Nanoce1779_2|525756, mRNA_3447 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525756
Unique NamemRNA_3447
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length291
Alignment locationscaffold_6:351208..351498 +

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Properties
Property NameValue
TranscriptId525842
TrackFilteredModels2
ProteinId525756
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:351208..351498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525756gene_3447Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525756mRNA_3447-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3447CDS_3447Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3447 ID=mRNA_3447|Name=jgi.p|Nanoce1779_2|525756|organism=Nannochloropsis oceanica|type=mRNA|length=291bp
ATGGCCGTGGCATTGGCCTTGCTGGCCTCGCCCGCCGCGGCCGCAGCGGA
TGCCTCTTGTCCTGTCTCCAAAGCCCGCACGAACGACGACTACTGTGACG
ATCTGGTATCAGGATGCGACGAGACGGAGACTAGTGCCTGCTCCTTCATC
AAACGAACTCCCACTTTTCAATGCAACGCCTCCGTTACAGGCGAGCCGCA
TTTGCTGCCTGCTTCCCGCGTGGGCGACACGGTTTGCGACTGCTGCGATG
GCTCCGATGAGGCGCCTGGCGTGTGCCCGGATGCATGCGGG
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protein sequence of jgi.p|Nanoce1779_2|525756

>mRNA_3447-protein ID=mRNA_3447-protein|Name=jgi.p|Nanoce1779_2|525756|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MAVALALLASPAAAAADASCPVSKARTNDDYCDDLVSGCDETETSACSFI
KRTPTFQCNASVTGEPHLLPASRVGDTVCDCCDGSDEAPGVCPDACG
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mRNA from alignment at scaffold_6:351208..351498+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3447 ID=mRNA_3447|Name=jgi.p|Nanoce1779_2|525756|organism=Nannochloropsis oceanica|type=mRNA|length=291bp|location=Sequence derived from alignment at scaffold_6:351208..351498+ (Nannochloropsis oceanica)
ATGGCCGTGGCATTGGCCTTGCTGGCCTCGCCCGCCGCGGCCGCAGCGGA
TGCCTCTTGTCCTGTCTCCAAAGCCCGCACGAACGACGACTACTGTGACG
ATCTGGTATCAGGATGCGACGAGACGGAGACTAGTGCCTGCTCCTTCATC
AAACGAACTCCCACTTTTCAATGCAACGCCTCCGTTACAGGCGAGCCGCA
TTTGCTGCCTGCTTCCCGCGTGGGCGACACGGTTTGCGACTGCTGCGATG
GCTCCGATGAGGCGCCTGGCGTGTGCCCGGATGCATGCGGG
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Coding sequence (CDS) from alignment at scaffold_6:351208..351498+

>mRNA_3447 ID=mRNA_3447|Name=jgi.p|Nanoce1779_2|525756|organism=Nannochloropsis oceanica|type=CDS|length=291bp|location=Sequence derived from alignment at scaffold_6:351208..351498+ (Nannochloropsis oceanica)
ATGGCCGTGGCATTGGCCTTGCTGGCCTCGCCCGCCGCGGCCGCAGCGGA
TGCCTCTTGTCCTGTCTCCAAAGCCCGCACGAACGACGACTACTGTGACG
ATCTGGTATCAGGATGCGACGAGACGGAGACTAGTGCCTGCTCCTTCATC
AAACGAACTCCCACTTTTCAATGCAACGCCTCCGTTACAGGCGAGCCGCA
TTTGCTGCCTGCTTCCCGCGTGGGCGACACGGTTTGCGACTGCTGCGATG
GCTCCGATGAGGCGCCTGGCGTGTGCCCGGATGCATGCGGG
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Synonyms
Publications