jgi.p|Nanoce1779_2|582141, mRNA_3445 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582141
Unique NamemRNA_3445
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1324
Alignment locationscaffold_6:343755..345078 -

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Properties
Property NameValue
TranscriptId582227
TrackFilteredModels2
ProteinId582141
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:343755..345078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582141gene_3445Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582141mRNA_3445-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3445CDS_3445Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3445 ID=mRNA_3445|Name=jgi.p|Nanoce1779_2|582141|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp
CAGAGGAATATCGTGCAGGCGCTCAAGATGCACCACGAGAAGGAGACGGG
GACGGGAGAGGGAGGGGAGGGGGAGGGGGAGGTCTTGAAGGTGGCAGCAG
CAGCAGCTGGAGGACGAGGAGAAAGCAAATCATCATCAAGCAAGTAATTC
AAAGAAAAGCGAAATGAGAGTGATTGAAATAGGAAATGGTGTAATAATTC
ATTGTATGCCTTTTGCTCTTTTGTGCATTCTTTCTCATTCGAGTAAGACT
CGCGCACGCAGCCCGCCACACGCACACGCACATACATACATCATGCATAC
CCGCATGTACTCACAAAAATTCTTTCAACGGTCATCAGCGTCAGCATCAA
TGGATAGTGTCTTGCATCAATCAATCAAAATCGTGTTACTTACTATGGCT
AAACCTAAGCTTATTTCTCACTATGGCTGAACCTAAGCTTATTACTTACT
ATGGCTGAAACTAAGCTATTATCCCTGTGTGTTGTTGACATACACAACCA
CGCGCACACTCACACCCATACTCTCACCATCACGTTCACACCAAGACACA
CTTAATATGGGAGAAAAAATCGGGGAAAACTAGTGCTCGACTGATCTTCC
CCGCTATAAATCTATCTCTGGTGTTTATGGGTATATGAAGAAGCAAAAAG
TGCCCCTCCTATCCCGGACTTTCTTCCCTCCGTTCCTCCCTCCCGTGCCA
TCAATATCACTACCTCTATACCATTGTCTGTCTTGCTCTCTTCCTGCTTT
TTGAGCTCGTACTCACTTAAGTGTCCGAAGCTGCTGGTGTTTCATGGTCT
CTCGGACTCACTGTCTCTCTTTCGGTGTCCACTATTCCTTCACGCTCTTA
ATCTCTCTGAAGCTCAGTCACTTCAACCCGTCTTGTCGGTCAGACAAACC
TCCTCTTAACCTACGTCACTATTTATTGTCGCCTTGACCTGATCCATCTG
TCTCTTACATCTCAGTTTCTAACGTTCACCATCCCTCTTCCTGTGATGTC
TACCACGTCCTTGCCCACAAGATCGCTGCTCTACCTCCTCCTCCTTCTCC
TTCTCCTCTTCCTCCTCTTGCGAAACAGAATCTGGAAGGGAGAGGTGCAT
ATCTTGGCGAAGGAGGTGAATATGACCCGTCGTATTTAAGGGTCATTGTC
TTGGGTGAGAAGGCTGTCATTTAAAGCCAAGGAGGGAGCAAAAGATTTAT
TCGCCTTATCACTCACAAAGCTCCGCATTTCGTCTACCTCTTCTTCCTCC
TCCTCCTCCATCTCCTTTTTCATCCCCTCCTTCTTCTTTATCGTGTCCGC
TTCTGACACCGTCAAGGGCGACAG
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protein sequence of jgi.p|Nanoce1779_2|582141

>mRNA_3445-protein ID=mRNA_3445-protein|Name=jgi.p|Nanoce1779_2|582141|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MRVIEIGNGVIIHCMPFALLCILSHSSKTRARSPPHAHAHTYIMHTRMYS
QKFFQRSSASASMDSVLHQSIKIVLLTMAKPKLISHYG*
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mRNA from alignment at scaffold_6:343755..345078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3445 ID=mRNA_3445|Name=jgi.p|Nanoce1779_2|582141|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp|location=Sequence derived from alignment at scaffold_6:343755..345078- (Nannochloropsis oceanica)
CAGAGGAATATCGTGCAGGCGCTCAAGATGCACCACGAGAAGGAGACGGG
GACGGGAGAGGGAGGGGAGGGGGAGGGGGAGGTCTTGAAGGTGGCAGCAG
CAGCAGCTGGAGGACGAGGAGAAAGCAAATCATCATCAAGCAAGTAATTC
AAAGAAAAGCGAAATGAGAGTGATTGAAATAGGAAATGGTGTAATAATTC
ATTGTATGCCTTTTGCTCTTTTGTGCATTCTTTCTCATTCGAGTAAGACT
CGCGCACGCAGCCCGCCACACGCACACGCACATACATACATCATGCATAC
CCGCATGTACTCACAAAAATTCTTTCAACGGTCATCAGCGTCAGCATCAA
TGGATAGTGTCTTGCATCAATCAATCAAAATCGTGTTACTTACTATGGCT
AAACCTAAGCTTATTTCTCACTATGGCTGAACCTAAGCTTATTACTTACT
ATGGCTGAAACTAAGCTATTATCCCTGTGTGTTGTTGACATACACAACCA
CGCGCACACTCACACCCATACTCTCACCATCACGTTCACACCAAGACACA
CTTAATATGGGAGAAAAAATCGGGGAAAACTAGTGCTCGACTGATCTTCC
CCGCTATAAATCTATCTCTGGTGTTTATGGGTATATGAAGAAGCAAAAAG
TGCCCCTCCTATCCCGGACTTTCTTCCCTCCGTTCCTCCCTCCCGTGCCA
TCAATATCACTACCTCTATACCATTGTCTGTCTTGCTCTCTTCCTGCTTT
TTGAGCTCGTACTCACTTAAGTGTCCGAAGCTGCTGGTGTTTCATGGTCT
CTCGGACTCACTGTCTCTCTTTCGGTGTCCACTATTCCTTCACGCTCTTA
ATCTCTCTGAAGCTCAGTCACTTCAACCCGTCTTGTCGGTCAGACAAACC
TCCTCTTAACCTACGTCACTATTTATTGTCGCCTTGACCTGATCCATCTG
TCTCTTACATCTCAGTTTCTAACGTTCACCATCCCTCTTCCTGTGATGTC
TACCACGTCCTTGCCCACAAGATCGCTGCTCTACCTCCTCCTCCTTCTCC
TTCTCCTCTTCCTCCTCTTGCGAAACAGAATCTGGAAGGGAGAGGTGCAT
ATCTTGGCGAAGGAGGTGAATATGACCCGTCGTATTTAAGGGTCATTGTC
TTGGGTGAGAAGGCTGTCATTTAAAGCCAAGGAGGGAGCAAAAGATTTAT
TCGCCTTATCACTCACAAAGCTCCGCATTTCGTCTACCTCTTCTTCCTCC
TCCTCCTCCATCTCCTTTTTCATCCCCTCCTTCTTCTTTATCGTGTCCGC
TTCTGACACCGTCAAGGGCGACAG
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Coding sequence (CDS) from alignment at scaffold_6:343755..345078-

>mRNA_3445 ID=mRNA_3445|Name=jgi.p|Nanoce1779_2|582141|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_6:343755..345078- (Nannochloropsis oceanica)
ATGAGAGTGATTGAAATAGGAAATGGTGTAATAATTCATTGTATGCCTTT
TGCTCTTTTGTGCATTCTTTCTCATTCGAGTAAGACTCGCGCACGCAGCC
CGCCACACGCACACGCACATACATACATCATGCATACCCGCATGTACTCA
CAAAAATTCTTTCAACGGTCATCAGCGTCAGCATCAATGGATAGTGTCTT
GCATCAATCAATCAAAATCGTGTTACTTACTATGGCTAAACCTAAGCTTA
TTTCTCACTATGGCTGA
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Synonyms
Publications