jgi.p|Nanoce1779_2|582137, mRNA_3443 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582137
Unique Name	mRNA_3443
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2267
Alignment location	scaffold_6:338033..340299 -

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Properties


Property Name	Value
TranscriptId	582223
Track	FilteredModels2
ProteinId	582137

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:338033..340299 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582137	gene_3443	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582137	mRNA_3443-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3443	CDS_3443	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:338033..340299-
coding sequence from alignment at scaffold_6:338033..340299-

mRNA sequence

>mRNA_3443 ID=mRNA_3443|Name=jgi.p|Nanoce1779_2|582137|organism=Nannochloropsis oceanica|type=mRNA|length=2267bp
CAGCTGGTACCACACTCTAAACCCCAATAAAATGTTACGATACTTATCCC
GACCGCTTGTCCATGCTGCGCGCACAACGACCGCCGGTGCCCATGCCCAG
CCCCCTCTGGCCTTGCGTAGACTCAGCTCCCGCTCTATCGGCCGCTCGGT
AGCCGGACGGCAAGGTGGCGGTGGTAGCACTGGCCAAGTGATGCCTCGTG
GACAAAGTGGTCCTCCTTTAGCTAGCCTTGGGCGATTTTTTGACGATTTC
GGAATGGACGTGTTTAATGATCCCTTCTTCCGCCCTTTTCTGGCGCGCGG
GCCAGGCAGCTCTTTGGAGGCAGCAGACGTTTCTATGGGACTGGACATTG
CGGAGACGGATAAGGAGTACGTGGTCAAAGCTGAGCTTCCCGGGGTCAAG
AAGGAGGATATCAAGGTGACCTTCCAGGAAGGCATCCTGAACATCGCGGC
GGAACGCAAGTGCGAGGAAGTGAAGGAGGACGAGCGCACCCAGCGCCACT
ACTCAGACTTTGCCTACGGGAAGGTGTCTCGCTCCCTGCGCGTGCCGGAC
GCTGCGGAGAAGGATCAAGTGGATGCACATTTAGAGGATGGGGTGCTGAC
GGTTAAAATTGCCAAGGGGGAGCACTCGAAACCGAAGGAGATCGAAGTCA
AGTGAATCGAGAAGAACAAGGGATGGAAGGGAGGAGGGAATGAGGGAAGG
GAGAGAGGGAGTGAGATTGGTAAAAGGAAAGGAAAGATAATAAATATGGA
GTAATCGGGAGGTGATAAAAAAGGACGGTGGGCGAAGAAGATGATTATGT
GCAGCGAGAGAGGTGAATATGAGGATCGAGAGAAACCAAAGGAGGAGCAG
CGCCCGCTGCGGCATGACAAGCTGCATTGGGAGACATGAGATTGCTGCAA
AAAGAGAGAAACGTGGATGTCCTCACGGTACCAAAGAAAGACGACAACAC
ATACGTAAACAAGCACAGAATGAGCGGCAGTAAGAAGGGCGTGCCAAATG
TAAGATGGAAGAATTAGGAACAGAATGCGAAGAGGCCGCCCATGAACACA
CACAAACCATCCCACACACGAACCCTCCCGGAACTAGGAAAGGAAGAATC
TAACAGAGAAAAGGAAGATTTGTTGTCTAAAAGACATGCAGACACACACA
GACACGAGCGTTTAGTCAAATAAGTCGCTGCTATTTTTACCTTGCATTGA
TATTCTATTCCTAGTATTGCTCCCTCCCCTCCCCCCTACTTTTTACAGCT
CCTCCTTGGCCTCAATAAAAGATAGATTACGATGCCCCGCGCTCCCACGC
CCGCGATCAAAGGAGAAAATAACGATATTTTCCTCAGACCTTGGGCTGTC
CACGTCCCCTTTGAATGAAGAATGAAAAAGAGTTGCCTCAACGTGAAAGC
CGATGGACACCAAAAGTTGCTCCATCTTCCAAGCTGCTGAGCCGAAGGAA
ACGATATAATCTGGAAGAAGACAGGGCAGGGGGGAGAAAGGTGTGCCTTC
CAACCTTCCGCTGCTGGTGTTGCTGCTACCGCTCTTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGTTGCTTTTCTCTCCATAACGTTGCGCGACATACCCT
AGCGGGTCGAGGAGAAACTCCGCGGTTGTCGTTCGATACGACGCGTGGCC
GTAAAGGTTGGGCAAGCAATCGAGGTGGTGGAGGAAAAGGTGCCGGGGAG
GAAGTGAGGGAGGATGAGCGGAAAGGGAGGAAGAGAAGAAGGCAGGCACG
TGCAAGTGCGTCGTCCAGGGCGTGGCATGACAAGGCATTAGAAAGTCAAT
CCGCACGTCATTACCCCCCTTCCCTCTCTGCTGCTGCTGCTGCTGTTGCT
GTTGCTGCTCCAATCGCATATCTGCCTGGAGTCGGTCAGACAAGAAGCTC
ATCACATCAATTGGACCCCGTTGGTGGACTCGGGAAAAATAAAAGGCAAC
GGGAGCATGCGTGAGGACGAGAAAGAGGACGAGAGAAAAGAAAGACCATC
GTTCCGTCTTTCTTCTTCGACTTGTCACGTTGGGTAAAGTGGAGAGTGAC
CAAGAGGAGGTAAGGGGTGGGAAGGGTGGAGGGGGTAGCGTGTCTATTAC
GAATGCTGCCCCGGCCAGCACGAAGGCTAGGGGAAGGATAGGAAGGAGGA
AGCGGAACTCCTTGTGGGGGGAGAGTGAGAGGCCTAAGGGATAGATTAGC
ACCACCAACGCCAACAGCCATAGAGAGGTTGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGG

protein sequence of jgi.p|Nanoce1779_2|582137

>mRNA_3443-protein ID=mRNA_3443-protein|Name=jgi.p|Nanoce1779_2|582137|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MLRYLSRPLVHAARTTTAGAHAQPPLALRRLSSRSIGRSVAGRQGGGGST
GQVMPRGQSGPPLASLGRFFDDFGMDVFNDPFFRPFLARGPGSSLEAADV
SMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKED
ERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSK
PKEIEVK*

mRNA from alignment at scaffold_6:338033..340299-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3443 ID=mRNA_3443|Name=jgi.p|Nanoce1779_2|582137|organism=Nannochloropsis oceanica|type=mRNA|length=2267bp|location=Sequence derived from alignment at scaffold_6:338033..340299- (Nannochloropsis oceanica)
CAGCTGGTACCACACTCTAAACCCCAATAAAATGTTACGATACTTATCCC
GACCGCTTGTCCATGCTGCGCGCACAACGACCGCCGGTGCCCATGCCCAG
CCCCCTCTGGCCTTGCGTAGACTCAGCTCCCGCTCTATCGGCCGCTCGGT
AGCCGGACGGCAAGGTGGCGGTGGTAGCACTGGCCAAGTGATGCCTCGTG
GACAAAGTGGTCCTCCTTTAGCTAGCCTTGGGCGATTTTTTGACGATTTC
GGAATGGACGTGTTTAATGATCCCTTCTTCCGCCCTTTTCTGGCGCGCGG
GCCAGGCAGCTCTTTGGAGGCAGCAGACGTTTCTATGGGACTGGACATTG
CGGAGACGGATAAGGAGTACGTGGTCAAAGCTGAGCTTCCCGGGGTCAAG
AAGGAGGATATCAAGGTGACCTTCCAGGAAGGCATCCTGAACATCGCGGC
GGAACGCAAGTGCGAGGAAGTGAAGGAGGACGAGCGCACCCAGCGCCACT
ACTCAGACTTTGCCTACGGGAAGGTGTCTCGCTCCCTGCGCGTGCCGGAC
GCTGCGGAGAAGGATCAAGTGGATGCACATTTAGAGGATGGGGTGCTGAC
GGTTAAAATTGCCAAGGGGGAGCACTCGAAACCGAAGGAGATCGAAGTCA
AGTGAATCGAGAAGAACAAGGGATGGAAGGGAGGAGGGAATGAGGGAAGG
GAGAGAGGGAGTGAGATTGGTAAAAGGAAAGGAAAGATAATAAATATGGA
GTAATCGGGAGGTGATAAAAAAGGACGGTGGGCGAAGAAGATGATTATGT
GCAGCGAGAGAGGTGAATATGAGGATCGAGAGAAACCAAAGGAGGAGCAG
CGCCCGCTGCGGCATGACAAGCTGCATTGGGAGACATGAGATTGCTGCAA
AAAGAGAGAAACGTGGATGTCCTCACGGTACCAAAGAAAGACGACAACAC
ATACGTAAACAAGCACAGAATGAGCGGCAGTAAGAAGGGCGTGCCAAATG
TAAGATGGAAGAATTAGGAACAGAATGCGAAGAGGCCGCCCATGAACACA
CACAAACCATCCCACACACGAACCCTCCCGGAACTAGGAAAGGAAGAATC
TAACAGAGAAAAGGAAGATTTGTTGTCTAAAAGACATGCAGACACACACA
GACACGAGCGTTTAGTCAAATAAGTCGCTGCTATTTTTACCTTGCATTGA
TATTCTATTCCTAGTATTGCTCCCTCCCCTCCCCCCTACTTTTTACAGCT
CCTCCTTGGCCTCAATAAAAGATAGATTACGATGCCCCGCGCTCCCACGC
CCGCGATCAAAGGAGAAAATAACGATATTTTCCTCAGACCTTGGGCTGTC
CACGTCCCCTTTGAATGAAGAATGAAAAAGAGTTGCCTCAACGTGAAAGC
CGATGGACACCAAAAGTTGCTCCATCTTCCAAGCTGCTGAGCCGAAGGAA
ACGATATAATCTGGAAGAAGACAGGGCAGGGGGGAGAAAGGTGTGCCTTC
CAACCTTCCGCTGCTGGTGTTGCTGCTACCGCTCTTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGTTGCTTTTCTCTCCATAACGTTGCGCGACATACCCT
AGCGGGTCGAGGAGAAACTCCGCGGTTGTCGTTCGATACGACGCGTGGCC
GTAAAGGTTGGGCAAGCAATCGAGGTGGTGGAGGAAAAGGTGCCGGGGAG
GAAGTGAGGGAGGATGAGCGGAAAGGGAGGAAGAGAAGAAGGCAGGCACG
TGCAAGTGCGTCGTCCAGGGCGTGGCATGACAAGGCATTAGAAAGTCAAT
CCGCACGTCATTACCCCCCTTCCCTCTCTGCTGCTGCTGCTGCTGTTGCT
GTTGCTGCTCCAATCGCATATCTGCCTGGAGTCGGTCAGACAAGAAGCTC
ATCACATCAATTGGACCCCGTTGGTGGACTCGGGAAAAATAAAAGGCAAC
GGGAGCATGCGTGAGGACGAGAAAGAGGACGAGAGAAAAGAAAGACCATC
GTTCCGTCTTTCTTCTTCGACTTGTCACGTTGGGTAAAGTGGAGAGTGAC
CAAGAGGAGGTAAGGGGTGGGAAGGGTGGAGGGGGTAGCGTGTCTATTAC
GAATGCTGCCCCGGCCAGCACGAAGGCTAGGGGAAGGATAGGAAGGAGGA
AGCGGAACTCCTTGTGGGGGGAGAGTGAGAGGCCTAAGGGATAGATTAGC
ACCACCAACGCCAACAGCCATAGAGAGGTTGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGG

Coding sequence (CDS) from alignment at scaffold_6:338033..340299-

>mRNA_3443 ID=mRNA_3443|Name=jgi.p|Nanoce1779_2|582137|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_6:338033..340299- (Nannochloropsis oceanica)
ATGTTACGATACTTATCCCGACCGCTTGTCCATGCTGCGCGCACAACGAC
CGCCGGTGCCCATGCCCAGCCCCCTCTGGCCTTGCGTAGACTCAGCTCCC
GCTCTATCGGCCGCTCGGTAGCCGGACGGCAAGGTGGCGGTGGTAGCACT
GGCCAAGTGATGCCTCGTGGACAAAGTGGTCCTCCTTTAGCTAGCCTTGG
GCGATTTTTTGACGATTTCGGAATGGACGTGTTTAATGATCCCTTCTTCC
GCCCTTTTCTGGCGCGCGGGCCAGGCAGCTCTTTGGAGGCAGCAGACGTT
TCTATGGGACTGGACATTGCGGAGACGGATAAGGAGTACGTGGTCAAAGC
TGAGCTTCCCGGGGTCAAGAAGGAGGATATCAAGGTGACCTTCCAGGAAG
GCATCCTGAACATCGCGGCGGAACGCAAGTGCGAGGAAGTGAAGGAGGAC
GAGCGCACCCAGCGCCACTACTCAGACTTTGCCTACGGGAAGGTGTCTCG
CTCCCTGCGCGTGCCGGACGCTGCGGAGAAGGATCAAGTGGATGCACATT
TAGAGGATGGGGTGCTGACGGTTAAAATTGCCAAGGGGGAGCACTCGAAA
CCGAAGGAGATCGAAGTCAAGTGA

Synonyms

Publications