Properties
| Property Name | Value |
|---|
| TranscriptId | 361135 |
| Track | FilteredModels2 |
| ProteinId | 361049 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:337046..339131 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3442 ID=mRNA_3442|Name=jgi.p|Nanoce1779_2|361049|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp
CTGACATGTATGTCTACTGGTTGGGAAAACGCGTGGCGACACCATGCAGA
GGAGGAGGAGGAAGAAGAGGAGGAGGAGAGAGCAGGGAGGGAGGGGAGAG
GCTGTAGGGAAGTGGGCCTTGTTCTTCCAGTGCAGTAATTGGTTCATGTG
GTATGCAGGGGTGAGAACTTTCTCGTCTTCCTTTGAGATGGCCTTGCTTG
TCCCTGCCGTGTACCACTGGTTGAGCCTCGTCGAGTGGATATCAAGGATC
AAGGAACAGGGAAATAAAGAAGCGGAAGAGGGGAAGGGAGCAGTGTACCT
TCCAGCTGGTCGTGTGTCGTGGGAAGAGCCCTTGGCGTTGGTGCTCGGTG
CACTCTCTATCATTGTCCGACCCACCGCCCTGTTCGCATGGCTACCCCTG
GGGCTATGGCGGATGTTTCACACACGCTTCGTTGACATGCCGCGGTATCT
CGTTATGGTGGTGCTGCCATGGACGGGCTTGGTCTTGGCAGGGGCCGTGC
TGTTAGACTCTCACTGCTACAGCCTCCTTTCTCAGTCCCTCGGCGCTGCC
ACCTCCTCCTCCGCCTCTGTTTCCTCCCCTTCCTCCTCTCTTAGTAACTG
GTTGGTATTTACTCCATTGAATTTTCTTCGTGTCAACCTTGTTGCTGACG
TGGCTTCCCAGTATGGAACGCACCCCTTCCACTGGTATTTCACTCTAGGG
GGACTCTCTGTTCTGACCACACACCTACCCTTCCTCCTCCTCGGCCTGCG
TCGCGCTTTCTTCTCTTCCTCCCCTTCCTTTTTCTTGCCGTCATCCTCTT
CAACACCGTCCTCCTCCTCTTCCTCTTCTACTTCTTCTTTATCTTCTTCC
TCCTCCTCCTCCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCAACCTCTCTATGGCTGTTGGCGTTGGTGGTGCTAATCTATCCCTTAG
GCCTCTCACTCTCCCCCCACAAGGAGTTCCGCTTCCTCCTTCCTATCCTT
CCCCTAGCCTTCGTGCTGGCCGGGGCAGCATTCGTAATAGACACGCTACC
CCCTCCACCCTTCCCACCCCTTACCTCCTCTTGGTCACTCTCCACTTTAC
CCAACGTGACAAGTCGAAGAAGAAAGACGGAACGATGGTCTTTCTTTTCT
CTCGTCCTCTTTCTCGTCCTCACGCATGCTCCCGTTGCCTTTTATTTTTC
CCGAGTCCACCAACGGGGTCCAATTGATGTGATGAGCTTCTTGTCTGACC
GACTCCAGGCAGATATGCGATTGGAGCAGCAACAGCAACAGCAGCAGCAG
CAGCAGAGAGGGAAGGGGGGTAATGACGTGCGGATTGACTTTCTAATGCC
TTGTCATGCCACGCCCTGGACGACGCACTTGCACGTGCCTGCCTTCTTCT
CTTCCTCCCTTTCCGCTCATCCTCCCTCACTTCCTCCCCGGCACCTTTTC
CTCCACCACCTCGATTGCTTGCCCAACCTTTACGGCCACGCGTCGTATCG
AACGACAACCGCGGAGTTTCTCCTCGACCCGCTAGGGTATGTCGCGCAAC
GTTATGGAGAGAAAAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAAG
AGCGGTAGCAGCAACACCAGCAGCGGAAGGTTGGAAGGCACACCTTTCTC
CCCCCTGCCCTGTCTTCTTCCAGATTATATCGTTTCCTTCGGCTCAGCAG
CTTGGAAGATGGAGCAACTTTTGGTGTCCATCGGCTTTCACGTTGAGGCA
ACTCTTTTTCATTCTTCATTCAAAGGGGACGTGGACAGCCCAAGGTCTGA
GGAAAATATCGTTATTTTCTCCTTTGATCGCGGGCGTGGGAGCGCGGGGC
ATCGTAATCTATCTTTTATTGAGGCCAAGGAGGAGCTGTAAAAAGTAGGG
GGGAGGGGAGGGAGCAATACTAGGAATAGAATATCAATGCAAGGTAAAAA
TAGCAGCGACTTATT back to topprotein sequence of jgi.p|Nanoce1779_2|361049 >mRNA_3442-protein ID=mRNA_3442-protein|Name=jgi.p|Nanoce1779_2|361049|organism=Nannochloropsis oceanica|type=polypeptide|length=616bp
MQRRRRKKRRRREQGGRGEAVGKWALFFQCSNWFMWYAGVRTFSSSFEMA
LLVPAVYHWLSLVEWISRIKEQGNKEAEEGKGAVYLPAGRVSWEEPLALV
LGALSIIVRPTALFAWLPLGLWRMFHTRFVDMPRYLVMVVLPWTGLVLAG
AVLLDSHCYSLLSQSLGAATSSSASVSSPSSSLSNWLVFTPLNFLRVNLV
ADVASQYGTHPFHWYFTLGGLSVLTTHLPFLLLGLRRAFFSSSPSFFLPS
SSSTPSSSSSSSTSSLSSSSSSSSPSSSSSSSSSSSSTSLWLLALVVLIY
PLGLSLSPHKEFRFLLPILPLAFVLAGAAFVIDTLPPPPFPPLTSSWSLS
TLPNVTSRRRKTERWSFFSLVLFLVLTHAPVAFYFSRVHQRGPIDVMSFL
SDRLQADMRLEQQQQQQQQQQRGKGGNDVRIDFLMPCHATPWTTHLHVPA
FFSSSLSAHPPSLPPRHLFLHHLDCLPNLYGHASYRTTTAEFLLDPLGYV
AQRYGEKSNSSSSSSSSSKSGSSNTSSGRLEGTPFSPLPCLLPDYIVSFG
SAAWKMEQLLVSIGFHVEATLFHSSFKGDVDSPRSEENIVIFSFDRGRGS
AGHRNLSFIEAKEEL* back to topmRNA from alignment at scaffold_6:337046..339131+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3442 ID=mRNA_3442|Name=jgi.p|Nanoce1779_2|361049|organism=Nannochloropsis oceanica|type=mRNA|length=2086bp|location=Sequence derived from alignment at scaffold_6:337046..339131+ (Nannochloropsis oceanica)
CTGACATGTATGTCTACTGGTTGGGAAAACGCGTGGCGACACCATGCAGA
GGAGGAGGAGGAAGAAGAGGAGGAGGAGCTAGAGTAGGAATTAGAGGAGA
TGGAGGAGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGA
GAGCAGGGAGGGAGGGGAGAGGCTGTAGGGAAGTGGGCCTTGTTCTTCCA
GTGCAGTAATTGGTTCATGTGGTATGCAGGGGTGAGAACTTTCTCGTCTT
CCTTTGAGATGGCCTTGCTTGTCCCTGCCGTGTACCACTGGTTGAGCCTC
GTCGAGTGGATATCAAGGATCAAGGAACAGGGAAATAAAGAAGCGGAAGA
GGGGAAGGGAGCAGTGTACCTTCCAGCTGGTCGTGTGTCGTGGGAAGAGC
CCTTGGCGTTGGTGCTCGGTGCACTCTCTATCATTGTCCGACCCACCGCC
CTGTTCGCATGGCTACCCCTGGGGCTATGGCGGATGTTTCACACACGCTT
CGTTGACATGCCGCGGTATCTCGTTATGGTGGTGCTGCCATGGACGGGCT
TGGTCTTGGCAGGGGCCGTGCTGTTAGACTCTCACTGCTACAGCCTCCTT
TCTCAGTCCCTCGGCGCTGCCACCTCCTCCTCCGCCTCTGTTTCCTCCCC
TTCCTCCTCTCTTAGTAACTGGTTGGTATTTACTCCATTGAATTTTCTTC
GTGTCAACCTTGTTGCTGACGTGGCTTCCCAGTATGGAACGCACCCCTTC
CACTGGTATTTCACTCTAGGGGGACTCTCTGTTCTGACCACACACCTACC
CTTCCTCCTCCTCGGCCTGCGTCGCGCTTTCTTCTCTTCCTCCCCTTCCT
TTTTCTTGCCGTCATCCTCTTCAACACCGTCCTCCTCCTCTTCCTCTTCT
ACTTCTTCTTTATCTTCTTCCTCCTCCTCCTCCTCTCCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCAACCTCTCTATGGCTGTTGGCGTTGG
TGGTGCTAATCTATCCCTTAGGCCTCTCACTCTCCCCCCACAAGGAGTTC
CGCTTCCTCCTTCCTATCCTTCCCCTAGCCTTCGTGCTGGCCGGGGCAGC
ATTCGTAATAGACACGCTACCCCCTCCACCCTTCCCACCCCTTACCTCCT
CTTGGTCACTCTCCACTTTACCCAACGTGACAAGTCGAAGAAGAAAGACG
GAACGATGGTCTTTCTTTTCTCTCGTCCTCTTTCTCGTCCTCACGCATGC
TCCCGTTGCCTTTTATTTTTCCCGAGTCCACCAACGGGGTCCAATTGATG
TGATGAGCTTCTTGTCTGACCGACTCCAGGCAGATATGCGATTGGAGCAG
CAACAGCAACAGCAGCAGCAGCAGCAGAGAGGGAAGGGGGGTAATGACGT
GCGGATTGACTTTCTAATGCCTTGTCATGCCACGCCCTGGACGACGCACT
TGCACGTGCCTGCCTTCTTCTCTTCCTCCCTTTCCGCTCATCCTCCCTCA
CTTCCTCCCCGGCACCTTTTCCTCCACCACCTCGATTGCTTGCCCAACCT
TTACGGCCACGCGTCGTATCGAACGACAACCGCGGAGTTTCTCCTCGACC
CGCTAGGGTATGTCGCGCAACGTTATGGAGAGAAAAGCAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAAGAGCGGTAGCAGCAACACCAGCAGCGGAAG
GTTGGAAGGCACACCTTTCTCCCCCCTGCCCTGTCTTCTTCCAGATTATA
TCGTTTCCTTCGGCTCAGCAGCTTGGAAGATGGAGCAACTTTTGGTGTCC
ATCGGCTTTCACGTTGAGGCAACTCTTTTTCATTCTTCATTCAAAGGGGA
CGTGGACAGCCCAAGGTCTGAGGAAAATATCGTTATTTTCTCCTTTGATC
GCGGGCGTGGGAGCGCGGGGCATCGTAATCTATCTTTTATTGAGGCCAAG
GAGGAGCTGTAAAAAGTAGGGGGGAGGGGAGGGAGCAATACTAGGAATAG
AATATCAATGCAAGGTAAAAATAGCAGCGACTTATT back to topCoding sequence (CDS) from alignment at scaffold_6:337046..339131+ >mRNA_3442 ID=mRNA_3442|Name=jgi.p|Nanoce1779_2|361049|organism=Nannochloropsis oceanica|type=CDS|length=3696bp|location=Sequence derived from alignment at scaffold_6:337046..339131+ (Nannochloropsis oceanica)
ATGCAGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGAGAGCAGGGAGGGAG
GGGAGAGGCTGTAGGGAAGTGGGCCTTGTTCTTCCAGTGCAGTAATTGGT
TCATGTGGTATGCAGGGGTGAGAACTTTCTCGTCTTCCTTTGAGATGGCC
TTGCTTGTCCCTGCCGTGTACCACTGGTTGAGCCTCGTCGAGTGGATATC
AAGGATCAAGGAACAGGGAAATAAAGAAGCGGAAGAGGGGAAGGGAGCAG
TGTACCTTCCAGCTGGTCGTGTGTCGTGGGAAGAGCCCTTGGCGTTGGTG
CTCGGTGCACTCTCTATCATTGTCCGACCCACCGCCCTGTTCGCATGGCT
ACCCCTGGGGCTATGGCGGATGTTTCACACACGCTTCGTTGACATGCCGC
GGTATCTCGTTATGGTGGTGCTGCCATGGACGGGCTTGGTCTTGGCAGGG
GCCGTGCTGTTAGACTCTCACTGCTACAGCCTCCTTTCTCAGTCCCTCGG
CGCTGCCACCTCCTCCTCCGCCTCTGTTTCCTCCCCTTCCTCCTCTCTTA
GTAACTGGTTGGTATTTACTCCATTGAATTTTCTTCGTGTCAACCTTGTT
GCTGACGTGGCTTCCCAGTATGGAACGCACCCCTTCCACTGGTATTTCAC
TCTAGGGGGACTCTCTGTTCTGACCACACACCTACCCTTCCTCCTCCTCG
GCCTGCGTCGCGCTTTCTTCTCTTCCTCCCCTTCCTTTTTCTTGCCGTCA
TCCTCTTCAACACCGTCCTCCTCCTCTTCCTCTTCTACTTCTTCTTTATC
TTCTTCCTCCTCCTCCTCCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCAACCTCTCTATGGCTGTTGGCGTTGGTGGTGCTAATCTAT
CCCTTAGGCCTCTCACTCTCCCCCCACAAGGAGTTCCGCTTCCTCCTTCC
TATCCTTCCCCTAGCCTTCGTGCTGGCCGGGGCAGCATTCGTAATAGACA
CGCTACCCCCTCCACCCTTCCCACCCCTTACCTCCTCTTGGTCACTCTCC
ACTTTACCCAACGTGACAAGTCGAAGAAGAAAGACGGAACGATGGTCTTT
CTTTTCTCTCGTCCTCTTTCTCGTCCTCACGCATGCTCCCGTTGCCTTTT
ATTTTTCCCGAGTCCACCAACGGGGTCCAATTGATGTGATGAGCTTCTTG
TCTGACCGACTCCAGGCAGATATGCGATTGGAGCAGCAACAGCAACAGCA
GCAGCAGCAGCAGAGAGGGAAGGGGGGTAATGACGTGCGGATTGACTTTC
TAATGCCTTGTCATGCCACGCCCTGGACGACGCACTTGCACGTGCCTGCC
TTCTTCTCTTCCTCCCTTTCCGCTCATCCTCCCTCACTTCCTCCCCGGCA
CCTTTTCCTCCACCACCTCGATTGCTTGCCCAACCTTTACGGCCACGCGT
CGTATCGAACGACAACCGCGGAGTTTCTCCTCGACCCGCTAGGGTATGTC
GCGCAACGTTATGGAGAGAAAAGCAACAGCAGCAGCAGCAGCAGCAGCAG
CAGCAAGAGCGGTAGCAGCAACACCAGCAGCGGAAGGTTGGAAGGCACAC
CTTTCTCCCCCCTGCCCTGTCTTCTTCCAGATTATATCGTTTCCTTCGGC
TCAGCAGCTTGGAAGATGGAGCAACTTTTGGTGTCCATCGGCTTTCACGT
TGAGGCAACTCTTTTTCATTCTTCATTCAAAGGGGACGTGGACAGCCCAA
GGTCTGAGGAAAATATCGTTATTTTCTCCTTTGATCGCGGGCGTGGGAGC
GCGGGGCATCGTAATCTATCTTTTATTGAGGCCAAGGAGGAGCTGTAAAT
GCAGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGAGAGCAGGGAGGGAGGG
GAGAGGCTGTAGGGAAGTGGGCCTTGTTCTTCCAGTGCAGTAATTGGTTC
ATGTGGTATGCAGGGGTGAGAACTTTCTCGTCTTCCTTTGAGATGGCCTT
GCTTGTCCCTGCCGTGTACCACTGGTTGAGCCTCGTCGAGTGGATATCAA
GGATCAAGGAACAGGGAAATAAAGAAGCGGAAGAGGGGAAGGGAGCAGTG
TACCTTCCAGCTGGTCGTGTGTCGTGGGAAGAGCCCTTGGCGTTGGTGCT
CGGTGCACTCTCTATCATTGTCCGACCCACCGCCCTGTTCGCATGGCTAC
CCCTGGGGCTATGGCGGATGTTTCACACACGCTTCGTTGACATGCCGCGG
TATCTCGTTATGGTGGTGCTGCCATGGACGGGCTTGGTCTTGGCAGGGGC
CGTGCTGTTAGACTCTCACTGCTACAGCCTCCTTTCTCAGTCCCTCGGCG
CTGCCACCTCCTCCTCCGCCTCTGTTTCCTCCCCTTCCTCCTCTCTTAGT
AACTGGTTGGTATTTACTCCATTGAATTTTCTTCGTGTCAACCTTGTTGC
TGACGTGGCTTCCCAGTATGGAACGCACCCCTTCCACTGGTATTTCACTC
TAGGGGGACTCTCTGTTCTGACCACACACCTACCCTTCCTCCTCCTCGGC
CTGCGTCGCGCTTTCTTCTCTTCCTCCCCTTCCTTTTTCTTGCCGTCATC
CTCTTCAACACCGTCCTCCTCCTCTTCCTCTTCTACTTCTTCTTTATCTT
CTTCCTCCTCCTCCTCCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCAACCTCTCTATGGCTGTTGGCGTTGGTGGTGCTAATCTATCC
CTTAGGCCTCTCACTCTCCCCCCACAAGGAGTTCCGCTTCCTCCTTCCTA
TCCTTCCCCTAGCCTTCGTGCTGGCCGGGGCAGCATTCGTAATAGACACG
CTACCCCCTCCACCCTTCCCACCCCTTACCTCCTCTTGGTCACTCTCCAC
TTTACCCAACGTGACAAGTCGAAGAAGAAAGACGGAACGATGGTCTTTCT
TTTCTCTCGTCCTCTTTCTCGTCCTCACGCATGCTCCCGTTGCCTTTTAT
TTTTCCCGAGTCCACCAACGGGGTCCAATTGATGTGATGAGCTTCTTGTC
TGACCGACTCCAGGCAGATATGCGATTGGAGCAGCAACAGCAACAGCAGC
AGCAGCAGCAGAGAGGGAAGGGGGGTAATGACGTGCGGATTGACTTTCTA
ATGCCTTGTCATGCCACGCCCTGGACGACGCACTTGCACGTGCCTGCCTT
CTTCTCTTCCTCCCTTTCCGCTCATCCTCCCTCACTTCCTCCCCGGCACC
TTTTCCTCCACCACCTCGATTGCTTGCCCAACCTTTACGGCCACGCGTCG
TATCGAACGACAACCGCGGAGTTTCTCCTCGACCCGCTAGGGTATGTCGC
GCAACGTTATGGAGAGAAAAGCAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAAGAGCGGTAGCAGCAACACCAGCAGCGGAAGGTTGGAAGGCACACCT
TTCTCCCCCCTGCCCTGTCTTCTTCCAGATTATATCGTTTCCTTCGGCTC
AGCAGCTTGGAAGATGGAGCAACTTTTGGTGTCCATCGGCTTTCACGTTG
AGGCAACTCTTTTTCATTCTTCATTCAAAGGGGACGTGGACAGCCCAAGG
TCTGAGGAAAATATCGTTATTTTCTCCTTTGATCGCGGGCGTGGGAGCGC
GGGGCATCGTAATCTATCTTTTATTGAGGCCAAGGAGGAGCTGTAA back to top
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