jgi.p|Nanoce1779_2|582134, mRNA_3441 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582134
Unique Name	mRNA_3441
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1494
Alignment location	scaffold_6:335254..337018 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582220
Track	FilteredModels2
ProteinId	582134

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:335254..337018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582134	gene_3441	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582134	mRNA_3441-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3441	CDS_3441	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:335254..337018+
coding sequence from alignment at scaffold_6:335254..337018+

mRNA sequence

>mRNA_3441 ID=mRNA_3441|Name=jgi.p|Nanoce1779_2|582134|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
ACAGACGCTTTTCAAACCCCAGCATGACAACGCTCCCGGGCCTGGATTTC
ACCGAGTACGATGACTTTGGCAACAATGGAAGCTTGGGAGAGGAGACCAT
GCGTATTTTGCGCGTCATCAACACCTATCGTACTTCTCTTCTTCCACCGT
ACCAATCGCATTTCCGCGTGATTGCCCTGGTTGTGTACAAGGACGGGGAA
GGCGGAGTCAGCCACGTCTGCGGCACCAATGCAGAGCCGTGCTCCATCGG
TGGCAGCATCTGCGCGGAGCGCGCGGCCTTGGTATCGCTCCGACATGCGT
CACAACCTGTAAAATTGCTTGCACTTTATGTAGTTACAGACGAAGCCCGC
AACGCGCTTTTCCCGGGCATTCTGTGCAAAGAGTTCTTGAGCAGCATGGC
TGACGATGACTTCACGATAATCGTGGCCAATGCCGAGACCACTGACGTCC
ACTTTAAGAAGCTGGGAGAGCTATATCCCTTCGCGTCCGCGTATAGACAC
ACAGATCGGAACGAGCTGGTGGCGACAGGACAAGCACTAGCACGGAAAAT
ACAAATGCCATCAACCGAAAGTCATGCGGCAATATTGTACGAGGAGGTGT
TCAAGGTGACCGCAAGGGACGACAAAGACAACGTCCATCCCATCCGATAC
GCGGCTGGTGTGCTCTTTGCTGATGGTACCCGTGTGGTGGCCTGGCAGAA
AAAGGGAATTGAATACGGCACGACTATCGATGCGATGGTGCAGCTGGCGC
ATGCCTTGGAGAGCAACAAATCGCAGGGACTTGCATCCCCTATCTTGCTT
TTACAATGTGACCAATTTGGCATCTTGCACGCCCCGTCCGGCCATGCCCG
AGGCTTTTTGATGGAATATGGATACGAGCAAGTGCCATTGCTTGTCCACG
ACATCCGCACAGGAGAGCTGCTGAGGATTACCGTGGGCGCGACGGCTCCA
GGGAGGCCTTTGATTAGCTTTGGGGAGGAAAATTAGGAGAGAATAGATTA
GAAGAGTTCAGCTGGAATGATACAGAACGCCTTGAAATGTACTAGAAACA
AAGGGGAAAAAATTAAACAAAATAATTGTGTAGACCAAAACCACCCACAA
CACGCACACAGCCACAGGAAAGCTGATAGGAGGTCTTGGCAGGTGGCACC
CATTAAGACGCGCCCTGGGGTGGCAAGCCTCCCCCTCCCAGCCATGCCTG
TGTCTTCCCCCTCCTTTCCATTCAGTCTACCATCGTTCTACCTTTGGCTT
TGCCTCGTGGTATTTCGCGTCATGAACGCCTGGACTGTCCGGACTTATTT
TAACCCTGACGAGTACTGGCAAGGCCCAGAGGTGGCTCACGTGCTTGTAT
TTGGCGCGGGTTACCTGACATGGGAATGGCAAATAGCACACATTCGTTCC
TTTCTACATCCGTTGCTCTTCACGGTCTTCTATGCTCTGCTAAAAGCATC
CGGGTTCGCCACCCGCGGTGCTGTCGCTTATGGGCCCTCGGTGG

protein sequence of jgi.p|Nanoce1779_2|582134

>mRNA_3441-protein ID=mRNA_3441-protein|Name=jgi.p|Nanoce1779_2|582134|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MTTLPGLDFTEYDDFGNNGSLGEETMRILRVINTYRTSLLPPYQSHFRVI
ALVVYKDGEGGVSHVCGTNAEPCSIGGSICAERAALVSLRHASQPVKLLA
LYVVTDEARNALFPGILCKEFLSSMADDDFTIIVANAETTDVHFKKLGEL
YPFASAYRHTDRNELVATGQALARKIQMPSTESHAAILYEEVFKVTARDD
KDNVHPIRYAAGVLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESNKS
QGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVHDIRTGELL
RITVGATAPGRPLISFGEEN*

mRNA from alignment at scaffold_6:335254..337018+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3441 ID=mRNA_3441|Name=jgi.p|Nanoce1779_2|582134|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp|location=Sequence derived from alignment at scaffold_6:335254..337018+ (Nannochloropsis oceanica)
ACAGACGCTTTTCAAACCCCAGCATGACAACGCTCCCGGGCCTGGATTTC
ACCGAGTACGATGACTTTGGCAACAATGGAAGCTTGGGAGAGGAGACCAT
GCGTATTTTGCGCGTCATCAACACCTATCGTACTTCTCTTCTTCCACCGT
ACCAATCGCATTTCCGCGTGATTGCCCTGGTTGTGTACAAGGACGGGGAA
GGCGGAGTCAGCCACGTCTGCGGCACCAATGCAGAGCCGTGCTCCATCGG
TGGCAGCATCTGCGCGGAGCGCGCGGCCTTGGTATCGCTCCGACATGCGT
CACAACCTGTAAAATTGCTTGCACTTTATGTAGTTACAGACGAAGCCCGC
AACGCGCTTTTCCCGGGCATTCTGTGCAAAGAGTTCTTGAGCAGCATGGC
TGACGATGACTTCACGATAATCGTGGCCAATGCCGAGACCACTGACGTCC
ACTTTAAGAAGCTGGGAGAGCTATATCCCTTCGCGTCCGCGTATAGACAC
ACAGATCGGAACGAGCTGGTGGCGACAGGACAAGCACTAGCACGGAAAAT
ACAAATGCCATCAACCGAAAGTCATGCGGCAATATTGTACGAGGAGGTGT
TCAAGGTGACCGCAAGGTGCGTTTGACGTACATGGCAGATAAATACATTA
CAACCATCCTTACATTCTCCTTCCATCGATCCATCTTTCGAACGCACAAT
ACACAGGGACGACAAAGACAACGTCCATCCCATCCGATACGCGGCTGGTG
TGCTCTTTGCTGATGGTACCCGTGTGGTGGCCTGGCAGAAAAAGGGAATT
GAATACGGCACGACTATCGATGCGATGGTGCAGCTGGCGCATGCCTTGGA
GAGCAACAAATCGCAGGGACTTGCATCCCCTATCTTGCTTTTACAATGTG
ACCAATTTGGCATCTTGCACGCCCCGTCCGGCCATGCCCGAGGCTTTTTG
ATGGAATATGGATACGAGCAAGTGCCATTGCTTGTCCACGACATCCGCAC
AGGAGAGCTGCTGAGGATTACCGTGGGCGCGACGGCTCCAGGGAGGCCTT
TGATTAGCTTTGGGGAGGAAAATTAGGAGAGAATAGATTAGAAGAGTTCA
GCTGGAATGATACAGAACGCCTTGAAATGTACTAGAAACAAAGGGGAAAA
AATTAAACAAAATAATTGTGTAGACCAAAACCACCCACAACACGCACACA
GCCACAGGAAAGCTGATAGGAGGTCTTGGCAGGTGGCACCCATTAAGACG
CGCCCTGGGGTGGCAAGCCTCCCCCTCCCAGCCATGCCTGTGTCTTCCCC
CTCCTTTCCATTCAGTCTACCATCGTTCTACCTTTGGCTTTGCCTCGTGG
TATTTCGCGTCATGAACGCCTGGACTGTCCGGACTTATTTTAACCCTGAC
GAGTACTGGCAAGGCCCAGAGGTGGCTCACGTGCTTGTATTTGGCGCGGG
TTACCTGTAAGTCTACGTATATTGTGCAATGACGCCTCTATGTAGCGTCT
TCGAGATGTGGGCAACTCTCTCACTCACCCTCGCTTGTTCCTGACAGAGT
CCCGGTGCATTTGACCACCCGCGAGCCCTCCCCCATTGACCTCTCACTTC
ATTTCCTCTTGACGCATATTCATAAATATACAAACAGGACATGGGAATGG
CAAATAGCACACATTCGTTCCTTTCTACATCCGTTGCTCTTCACGGTCTT
CTATGCTCTGCTAAAAGCATCCGGGTTCGCCACCCGCGGTGCTGTCGCTT
ATGGGCCCTCGGTGG

Coding sequence (CDS) from alignment at scaffold_6:335254..337018+

>mRNA_3441 ID=mRNA_3441|Name=jgi.p|Nanoce1779_2|582134|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_6:335254..337018+ (Nannochloropsis oceanica)
ATGACAACGCTCCCGGGCCTGGATTTCACCGAGTACGATGACTTTGGCAA
CAATGGAAGCTTGGGAGAGGAGACCATGCGTATTTTGCGCGTCATCAACA
CCTATCGTACTTCTCTTCTTCCACCGTACCAATCGCATTTCCGCGTGATT
GCCCTGGTTGTGTACAAGGACGGGGAAGGCGGAGTCAGCCACGTCTGCGG
CACCAATGCAGAGCCGTGCTCCATCGGTGGCAGCATCTGCGCGGAGCGCG
CGGCCTTGGTATCGCTCCGACATGCGTCACAACCTGTAAAATTGCTTGCA
CTTTATGTAGTTACAGACGAAGCCCGCAACGCGCTTTTCCCGGGCATTCT
GTGCAAAGAGTTCTTGAGCAGCATGGCTGACGATGACTTCACGATAATCG
TGGCCAATGCCGAGACCACTGACGTCCACTTTAAGAAGCTGGGAGAGCTA
TATCCCTTCGCGTCCGCGTATAGACACACAGATCGGAACGAGCTGGTGGC
GACAGGACAAGCACTAGCACGGAAAATACAAATGCCATCAACCGAAAGTC
ATGCGGCAATATTGTACGAGGAGGTGTTCAAGGTGACCGCAAGGGACGAC
AAAGACAACGTCCATCCCATCCGATACGCGGCTGGTGTGCTCTTTGCTGA
TGGTACCCGTGTGGTGGCCTGGCAGAAAAAGGGAATTGAATACGGCACGA
CTATCGATGCGATGGTGCAGCTGGCGCATGCCTTGGAGAGCAACAAATCG
CAGGGACTTGCATCCCCTATCTTGCTTTTACAATGTGACCAATTTGGCAT
CTTGCACGCCCCGTCCGGCCATGCCCGAGGCTTTTTGATGGAATATGGAT
ACGAGCAAGTGCCATTGCTTGTCCACGACATCCGCACAGGAGAGCTGCTG
AGGATTACCGTGGGCGCGACGGCTCCAGGGAGGCCTTTGATTAGCTTTGG
GGAGGAAAATTAGATGACAACGCTCCCGGGCCTGGATTTCACCGAGTACG
ATGACTTTGGCAACAATGGAAGCTTGGGAGAGGAGACCATGCGTATTTTG
CGCGTCATCAACACCTATCGTACTTCTCTTCTTCCACCGTACCAATCGCA
TTTCCGCGTGATTGCCCTGGTTGTGTACAAGGACGGGGAAGGCGGAGTCA
GCCACGTCTGCGGCACCAATGCAGAGCCGTGCTCCATCGGTGGCAGCATC
TGCGCGGAGCGCGCGGCCTTGGTATCGCTCCGACATGCGTCACAACCTGT
AAAATTGCTTGCACTTTATGTAGTTACAGACGAAGCCCGCAACGCGCTTT
TCCCGGGCATTCTGTGCAAAGAGTTCTTGAGCAGCATGGCTGACGATGAC
TTCACGATAATCGTGGCCAATGCCGAGACCACTGACGTCCACTTTAAGAA
GCTGGGAGAGCTATATCCCTTCGCGTCCGCGTATAGACACACAGATCGGA
ACGAGCTGGTGGCGACAGGACAAGCACTAGCACGGAAAATACAAATGCCA
TCAACCGAAAGTCATGCGGCAATATTGTACGAGGAGGTGTTCAAGGTGAC
CGCAAGGGACGACAAAGACAACGTCCATCCCATCCGATACGCGGCTGGTG
TGCTCTTTGCTGATGGTACCCGTGTGGTGGCCTGGCAGAAAAAGGGAATT
GAATACGGCACGACTATCGATGCGATGGTGCAGCTGGCGCATGCCTTGGA
GAGCAACAAATCGCAGGGACTTGCATCCCCTATCTTGCTTTTACAATGTG
ACCAATTTGGCATCTTGCACGCCCCGTCCGGCCATGCCCGAGGCTTTTTG
ATGGAATATGGATACGAGCAAGTGCCATTGCTTGTCCACGACATCCGCAC
AGGAGAGCTGCTGAGGATTACCGTGGGCGCGACGGCTCCAGGGAGGCCTT
TGATTAGCTTTGGGGAGGAAAATTAG

Synonyms

Publications